Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8021F04.5 |
| Conread position: | 501-722 |
| Cow position: | chr6:56909781-56910012 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 501-768 |
| Cow position: | chr6:26451455-26451183 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 85, 166 |
| Conread position: | 501-924 |
| Cow position: | chr6:49801225-49801656 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 269 |
| Conread position: | 504-760 |
| Cow position: | chr6:50742977-50743235 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 83, 88 |
| Conread position: | 504-760 |
| Cow position: | chr6:61436403-61436145 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 192 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 10, 98 |
| Conread position: | 504-912 |
| Cow position: | chr6:16604367-16604782 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 29 |
| Conread position: | 504-924 |
| Cow position: | chr6:11177042-11177444 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 295 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 78, 149 |
| Conread position: | 505-767 |
| Cow position: | chr6:27413528-27413275 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 110, 39 |
| Conread position: | 505-770 |
| Cow position: | chr6:61844656-61844918 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 71, 62 |
| Conread position: | 510-760 |
| Cow position: | chr6:48151704-48151455 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 64, 76 |
| Conread position: | 510-768 |
| Cow position: | chr6:54338137-54337873 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 40, 59 |
| Conread position: | 512-840 |
| Cow position: | chr6:44496351-44496025 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 96 |
| Conread position: | 514-768 |
| Cow position: | chr6:60795120-60794858 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 200 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 87, 191 |
| Conread position: | 515-759 |
| Cow position: | chr6:45339957-45339717 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 159, 75 |
| Conread position: | 515-759 |
| Cow position: | chr6:59298029-59297797 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 100, 22 |
| Conread position: | 515-759 |
| Cow position: | chr6:60065182-60064940 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 100, 68 |
| Conread position: | 515-760 |
| Cow position: | chr6:50481619-50481865 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 100, 94 |
| Conread position: | 515-760 |
| Cow position: | chr6:53233874-53233627 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 100, 91 |
| Conread position: | 515-774 |
| Cow position: | chr6:44231338-44231081 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 115, 75 |
| Conread position: | 515-924 |
| Cow position: | chr6:37884529-37884949 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 311 |
| Conread position: | 515-924 |
| Cow position: | chr6:62993891-62994306 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 24 |
| Conread position: | 516-760 |
| Cow position: | chr6:14883559-14883317 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 190 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 99, 75 |
| Conread position: | 517-760 |
| Cow position: | chr6:7497113-7496868 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 184 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 98, 74 |
| Conread position: | 517-873 |
| Cow position: | chr6:47225918-47226281 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 126 |
| Conread position: | 520-760 |
| Cow position: | chr6:15068962-15068722 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 180 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 155, 10 |
| Conread position: | 520-906 |
| Cow position: | chr6:42803998-42804369 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 271 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 79, 70 |
| Conread position: | 520-912 |
| Cow position: | chr6:24803921-24803522 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 12 |
| Conread position: | 520-918 |
| Cow position: | chr6:38939575-38939979 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 71 |
| Conread position: | 520-924 |
| Cow position: | chr6:62860329-62859921 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 114 |
| Conread position: | 522-760 |
| Cow position: | chr6:37390445-37390207 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 154, 41 |
| Conread position: | 522-767 |
| Cow position: | chr6:26454438-26454189 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 64, 77 |
| Conread position: | 524-767 |
| Cow position: | chr6:67782060-67782311 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 75, 116 |
| Conread position: | 528-766 |
| Cow position: | chr6:50266105-50265858 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 70, 145 |
| Conread position: | 545-745 |
| Cow position: | chr6:23900058-23899851 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 54, 11 |
| Conread position: | 547-760 |
| Cow position: | chr6:1632242-1632453 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 68, 41 |
| Conread position: | 547-768 |
| Cow position: | chr6:47228962-47228734 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 41, 92 |
| Conread position: | 549-760 |
| Cow position: | chr6:61542793-61542583 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 66, 41 |
| Conread position: | 557-760 |
| Cow position: | chr6:28433960-28433759 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 58, 43 |
Show alignments to all cow chromosomes.