Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8021F04.5 |
| Conread position: | 487-769 |
| Cow position: | chr9:8627162-8627451 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 208 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 112, 15 |
| Conread position: | 501-912 |
| Cow position: | chr9:16863578-16863991 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 257 |
| Conread position: | 501-913 |
| Cow position: | chr9:1383254-1383650 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 155 |
| Conread position: | 502-764 |
| Cow position: | chr9:15993445-15993172 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 97, 247 |
| Conread position: | 504-737 |
| Cow position: | chr9:33569354-33569600 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 95, 49 |
| Conread position: | 504-745 |
| Cow position: | chr9:22440934-22441175 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 111, 39 |
| Conread position: | 504-745 |
| Cow position: | chr9:28536059-28536306 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 192 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 95, 49 |
| Conread position: | 504-766 |
| Cow position: | chr9:36712883-36712611 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 95, 219 |
| Conread position: | 504-767 |
| Cow position: | chr9:34402410-34402673 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 111, 86 |
| Conread position: | 504-924 |
| Cow position: | chr9:44114478-44114886 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 290 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 45, 35 |
| Conread position: | 505-758 |
| Cow position: | chr9:7448035-7448304 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 58, 49 |
| Conread position: | 505-924 |
| Cow position: | chr9:27385901-27385472 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 238 |
| Conread position: | 512-768 |
| Cow position: | chr9:42252823-42252555 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 514-776 |
| Cow position: | chr9:37289948-37289672 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 515-750 |
| Cow position: | chr9:49421122-49420885 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 100, 68 |
| Conread position: | 515-760 |
| Cow position: | chr9:4968268-4968511 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 100, 84 |
| Conread position: | 515-760 |
| Cow position: | chr9:5701377-5701629 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 84, 67 |
| Conread position: | 515-760 |
| Cow position: | chr9:20605310-20605548 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 100, 74 |
| Conread position: | 515-760 |
| Cow position: | chr9:25031940-25032184 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 100, 74 |
| Conread position: | 515-760 |
| Cow position: | chr9:40082485-40082233 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 25, 76 |
| Conread position: | 515-760 |
| Cow position: | chr9:41027108-41026852 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 515-768 |
| Cow position: | chr9:3435919-3436176 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 84, 126 |
| Conread position: | 515-815 |
| Cow position: | chr9:1630974-1631278 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 211 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 24, 76 |
| Conread position: | 515-924 |
| Cow position: | chr9:5381157-5380755 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 41 |
| Conread position: | 515-924 |
| Cow position: | chr9:6260536-6260114 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 288 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 39, 150 |
| Conread position: | 515-924 |
| Cow position: | chr9:12638371-12637967 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 149 |
| Conread position: | 517-912 |
| Cow position: | chr9:1097731-1097352 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 273 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 97, 72 |
| Conread position: | 518-768 |
| Cow position: | chr9:7616074-7615817 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 193 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 15, 240 |
| Conread position: | 520-759 |
| Cow position: | chr9:8596660-8596422 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 95, 70 |
| Conread position: | 523-919 |
| Cow position: | chr9:25541643-25541247 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 278 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 63, 114 |
| Conread position: | 525-873 |
| Cow position: | chr9:16618955-16619301 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 139 |
| Conread position: | 531-768 |
| Cow position: | chr9:34047937-34047689 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 542-907 |
| Cow position: | chr9:40440742-40441110 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 123 |
| Conread position: | 542-918 |
| Cow position: | chr9:7009036-7008668 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 255 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 57, 224 |
| Conread position: | 587-871 |
| Cow position: | chr9:23133417-23133696 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 78 |
| Conread position: | 596-924 |
| Cow position: | chr9:5479568-5479225 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 224 |
| Conread position: | 597-768 |
| Cow position: | chr9:61574501-61574329 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 18, 68 |
| Conread position: | 597-918 |
| Cow position: | chr9:58569416-58569718 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 231 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 18, 37 |
| Conread position: | 602-868 |
| Cow position: | chr9:8321150-8321414 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 13, 41 |
| Conread position: | 626-865 |
| Cow position: | chr9:48193777-48193538 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 64, 182 |
| Conread position: | 632-873 |
| Cow position: | chr9:8083148-8082906 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 42, 51 |
| Conread position: | 653-924 |
| Cow position: | chr9:36602513-36602767 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 24, 119 |
| Conread position: | 791-924 |
| Cow position: | chr9:42252551-42252420 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 128, 26 |
Show alignments to all cow chromosomes.