Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8021F04.5 |
| Conread position: | 488-722 |
| Cow position: | chrX:9514871-9515117 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 74, 18 |
| Conread position: | 488-726 |
| Cow position: | chrX:40598848-40598598 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 74, 18 |
| Conread position: | 494-766 |
| Cow position: | chrX:32978645-32978929 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 494-768 |
| Cow position: | chrX:25306482-25306762 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 94, 170 |
| Conread position: | 496-905 |
| Cow position: | chrX:48264892-48265301 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 119 |
| Conread position: | 504-744 |
| Cow position: | chrX:29919601-29919852 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 504-745 |
| Cow position: | chrX:42570424-42570665 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 94, 157 |
| Conread position: | 504-748 |
| Cow position: | chrX:26463893-26463640 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 94, 235 |
| Conread position: | 504-759 |
| Cow position: | chrX:38630439-38630681 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 110, 85 |
| Conread position: | 504-768 |
| Cow position: | chrX:19503629-19503362 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 94, 14 |
| Conread position: | 504-768 |
| Cow position: | chrX:34827524-34827258 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 84, 42 |
| Conread position: | 504-768 |
| Cow position: | chrX:37074774-37075039 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 200 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 84, 142 |
| Conread position: | 507-745 |
| Cow position: | chrX:12649352-12649104 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 22, 47 |
| Conread position: | 510-768 |
| Cow position: | chrX:39528693-39528431 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 88, 129 |
| Conread position: | 512-722 |
| Cow position: | chrX:26411912-26411689 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 11, 43 |
| Conread position: | 512-924 |
| Cow position: | chrX:36090683-36090262 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 127 |
| Conread position: | 514-873 |
| Cow position: | chrX:47331470-47331839 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 260 |
| Conread position: | 515-714 |
| Cow position: | chrX:39983888-39983690 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 99, 74 |
| Conread position: | 515-756 |
| Cow position: | chrX:5414733-5414490 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 102, 83 |
| Conread position: | 515-757 |
| Cow position: | chrX:39861262-39861018 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 84, 133 |
| Conread position: | 515-759 |
| Cow position: | chrX:12275554-12275795 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 44, 76 |
| Conread position: | 515-759 |
| Cow position: | chrX:26381324-26381563 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 100, 75 |
| Conread position: | 515-759 |
| Cow position: | chrX:29144700-29144933 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 37, 18 |
| Conread position: | 515-759 |
| Cow position: | chrX:42417118-42416875 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 100, 75 |
| Conread position: | 515-760 |
| Cow position: | chrX:31204141-31203896 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 181 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 100, 68 |
| Conread position: | 515-760 |
| Cow position: | chrX:42497102-42496859 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 100, 91 |
| Conread position: | 515-768 |
| Cow position: | chrX:24394727-24394479 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 61, 75 |
| Conread position: | 515-775 |
| Cow position: | chrX:47336063-47336331 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 194 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 515-912 |
| Cow position: | chrX:28641873-28641482 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 266 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 99, 86 |
| Conread position: | 515-924 |
| Cow position: | chrX:45893229-45892831 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 68 |
| Conread position: | 517-924 |
| Cow position: | chrX:48015841-48016255 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 29 |
| Conread position: | 520-918 |
| Cow position: | chrX:30675505-30675128 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 261 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 28, 16 |
| Conread position: | 521-892 |
| Cow position: | chrX:45769479-45769861 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 267 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 47, 307 |
| Conread position: | 524-757 |
| Cow position: | chrX:44117040-44117282 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 74, 89 |
| Conread position: | 533-760 |
| Cow position: | chrX:28037053-28036831 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 164 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 45, 40 |
| Conread position: | 554-737 |
| Cow position: | chrX:42467250-42467441 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 567-767 |
| Cow position: | chrX:15267122-15267333 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 32, 76 |
| Conread position: | 614-766 |
| Cow position: | chrX:6393023-6393174 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 148, 42 |
| Conread position: | 640-760 |
| Cow position: | chrX:28042296-28042417 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 34, 79 |
Show alignments to all cow chromosomes.