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Cow genome map

           
Conread name:
           
Ss1.1-Pig3-SRG8021L09.3
        

               
Conread position:
               
503-708
               

               
Cow position:
               
chr29:34356234-34356025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
52, 11
               

               
Conread position:
               
509-733
               

               
Cow position:
               
chr29:6517487-6517263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
34, 185
               

               
Conread position:
               
510-747
               

               
Cow position:
               
chr29:16290977-16290746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
511-726
               

               
Cow position:
               
chr29:4647953-4648168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
27, 96
               

               
Conread position:
               
515-713
               

               
Cow position:
               
chr29:42887220-42887021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
148, 15
               

               
Conread position:
               
516-732
               

               
Cow position:
               
chr29:2414507-2414717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
56, 20
               

               
Conread position:
               
524-714
               

               
Cow position:
               
chr29:14838565-14838750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
526-713
               

               
Cow position:
               
chr29:25104836-25104645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
42, 56
               

               
Conread position:
               
530-713
               

               
Cow position:
               
chr29:42363783-42363963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
532-693
               

               
Cow position:
               
chr29:659518-659354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
533-727
               

               
Cow position:
               
chr29:35275416-35275603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
537-756
               

               
Cow position:
               
chr29:5830789-5831008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
122, 36
               

               
Conread position:
               
539-724
               

               
Cow position:
               
chr29:40112611-40112425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
14, 120
               

               
Conread position:
               
539-747
               

               
Cow position:
               
chr29:33511497-33511709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
34, 182
               

               
Conread position:
               
540-750
               

               
Cow position:
               
chr29:42630344-42630138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
19, 93
               

               
Conread position:
               
541-747
               

               
Cow position:
               
chr29:25814609-25814816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
20, 178
               

               
Conread position:
               
542-714
               

               
Cow position:
               
chr29:6441805-6441629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
14, 94
               

               
Conread position:
               
542-725
               

               
Cow position:
               
chr29:28066705-28066529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
14, 58
               

               
Conread position:
               
542-726
               

               
Cow position:
               
chr29:22690451-22690266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
112, 176
               

               
Conread position:
               
542-728
               

               
Cow position:
               
chr29:30294647-30294834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
121, 176
               

               
Conread position:
               
542-732
               

               
Cow position:
               
chr29:4121081-4120889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
15, 177
               

               
Conread position:
               
542-743
               

               
Cow position:
               
chr29:3549829-3549627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
118, 176
               

               
Conread position:
               
543-713
               

               
Cow position:
               
chr29:35281696-35281516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
544-714
               

               
Cow position:
               
chr29:20770568-20770395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
5, 107
               

               
Conread position:
               
544-747
               

               
Cow position:
               
chr29:17804747-17804555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
546-744
               

               
Cow position:
               
chr29:44684316-44684122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
547-729
               

               
Cow position:
               
chr29:25268357-25268173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
100, 170
               

               
Conread position:
               
547-732
               

               
Cow position:
               
chr29:19949528-19949342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
22, 109
               

               
Conread position:
               
547-734
               

               
Cow position:
               
chr29:4070837-4070657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
547-747
               

               
Cow position:
               
chr29:29769132-29769331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
13, 110
               

               
Conread position:
               
547-749
               

               
Cow position:
               
chr29:35292305-35292110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
181, 98
               

               
Conread position:
               
548-650
               

               
Cow position:
               
chr29:2720836-2720939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
104
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
548-709
               

               
Cow position:
               
chr29:22729785-22729623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
26, 11
               

               
Conread position:
               
548-717
               

               
Cow position:
               
chr29:24119281-24119452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
113, 21
               

               
Conread position:
               
548-718
               

               
Cow position:
               
chr29:23637457-23637631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
112, 21
               

               
Conread position:
               
548-726
               

               
Cow position:
               
chr29:34668852-34669027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
110, 24
               

               
Conread position:
               
548-726
               

               
Cow position:
               
chr29:37771667-37771845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
87, 169
               

               
Conread position:
               
548-727
               

               
Cow position:
               
chr29:30441157-30440977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
113, 141
               

               
Conread position:
               
548-731
               

               
Cow position:
               
chr29:8163608-8163792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
8, 171
               

               
Conread position:
               
548-744
               

               
Cow position:
               
chr29:35189826-35189630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
98, 21
               

               
Conread position:
               
548-747
               

               
Cow position:
               
chr29:23845059-23844858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
24, 171
               

               
Conread position:
               
548-747
               

               
Cow position:
               
chr29:29973798-29973995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
105, 42
               

               
Conread position:
               
548-747
               

               
Cow position:
               
chr29:35677322-35677523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
24, 171
               

               
Conread position:
               
548-759
               

               
Cow position:
               
chr29:4813564-4813349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
19, 173
               

               
Conread position:
               
549-703
               

               
Cow position:
               
chr29:25981787-25981940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
549-709
               

               
Cow position:
               
chr29:25669298-25669150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
549-714
               

               
Cow position:
               
chr29:5046872-5046704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
22, 52
               

               
Conread position:
               
549-714
               

               
Cow position:
               
chr29:35458553-35458721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
112, 20
               

               
Conread position:
               
549-726
               

               
Cow position:
               
chr29:35084006-35084181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
113, 60
               

               
Conread position:
               
549-727
               

               
Cow position:
               
chr29:4440988-4441164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
106, 142
               

               
Conread position:
               
549-732
               

               
Cow position:
               
chr29:396619-396441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
549-744
               

               
Cow position:
               
chr29:34359608-34359798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
33, 10
               

               
Conread position:
               
549-747
               

               
Cow position:
               
chr29:16200260-16200458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
112, 20
               

               
Conread position:
               
549-747
               

               
Cow position:
               
chr29:26211269-26211072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
109, 20
               

               
Conread position:
               
549-747
               

               
Cow position:
               
chr29:32894473-32894283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
549-749
               

               
Cow position:
               
chr29:35737099-35737309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
19, 52
               

               
Conread position:
               
550-673
               

               
Cow position:
               
chr29:28175872-28175747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
550-694
               

               
Cow position:
               
chr29:26777225-26777079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
111, 19
               

               
Conread position:
               
550-706
               

               
Cow position:
               
chr29:20644135-20643974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
23, 45
               

               
Conread position:
               
550-709
               

               
Cow position:
               
chr29:22720428-22720587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
18, 100
               

               
Conread position:
               
550-709
               

               
Cow position:
               
chr29:23954846-23954686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
89, 25
               

               
Conread position:
               
550-714
               

               
Cow position:
               
chr29:16652378-16652207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
550-726
               

               
Cow position:
               
chr29:4484314-4484137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
26, 168
               

               
Conread position:
               
550-726
               

               
Cow position:
               
chr29:26563605-26563782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
102, 49
               

               
Conread position:
               
550-727
               

               
Cow position:
               
chr29:18556881-18556712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
550-727
               

               
Cow position:
               
chr29:22018967-22019147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
18, 170
               

               
Conread position:
               
550-730
               

               
Cow position:
               
chr29:22068528-22068703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
103, 17
               

               
Conread position:
               
550-730
               

               
Cow position:
               
chr29:38347818-38347990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
105, 43
               

               
Conread position:
               
550-732
               

               
Cow position:
               
chr29:2219604-2219422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
26, 167
               

               
Conread position:
               
550-732
               

               
Cow position:
               
chr29:38732372-38732188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
22, 169
               

               
Conread position:
               
550-744
               

               
Cow position:
               
chr29:14375663-14375858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
108, 168
               

               
Conread position:
               
550-747
               

               
Cow position:
               
chr29:4492648-4492456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
550-747
               

               
Cow position:
               
chr29:25793357-25793166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
550-749
               

               
Cow position:
               
chr29:12680375-12680174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
24, 169
               

               
Conread position:
               
550-768
               

               
Cow position:
               
chr29:31929204-31928989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
24, 81
               

               
Conread position:
               
551-698
               

               
Cow position:
               
chr29:6515648-6515499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
551-701
               

               
Cow position:
               
chr29:16164221-16164372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
110, 18
               

               
Conread position:
               
551-714
               

               
Cow position:
               
chr29:22735234-22735397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
101, 12
               

               
Conread position:
               
551-726
               

               
Cow position:
               
chr29:8634864-8634695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
118, 19
               

               
Conread position:
               
551-726
               

               
Cow position:
               
chr29:30123286-30123463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
22, 167
               

               
Conread position:
               
551-727
               

               
Cow position:
               
chr29:23678916-23678749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
119, 90
               

               
Conread position:
               
551-727
               

               
Cow position:
               
chr29:31489542-31489359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
19, 172
               

               
Conread position:
               
551-740
               

               
Cow position:
               
chr29:11894917-11894725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
24, 169
               

               
Conread position:
               
551-747
               

               
Cow position:
               
chr29:28420970-28420776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
110, 8
               

               
Conread position:
               
551-747
               

               
Cow position:
               
chr29:31982037-31981851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
551-747
               

               
Cow position:
               
chr29:40350865-40351055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
25, 95
               

               
Conread position:
               
551-749
               

               
Cow position:
               
chr29:39038055-39038251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
109, 8
               

               
Conread position:
               
551-750
               

               
Cow position:
               
chr29:5520270-5520468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
110, 12
               

               
Conread position:
               
552-726
               

               
Cow position:
               
chr29:28739845-28739666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
16, 132
               

               
Conread position:
               
552-727
               

               
Cow position:
               
chr29:2056274-2056101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
47, 101
               

               
Conread position:
               
552-727
               

               
Cow position:
               
chr29:23812834-23812999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
552-732
               

               
Cow position:
               
chr29:27929981-27929803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
11, 95
               

               
Conread position:
               
552-732
               

               
Cow position:
               
chr29:27997032-27997215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
11, 168
               

               
Conread position:
               
552-747
               

               
Cow position:
               
chr29:936415-936227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
552-748
               

               
Cow position:
               
chr29:17462567-17462761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
47, 7
               

               
Conread position:
               
552-750
               

               
Cow position:
               
chr29:1933356-1933554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
109, 61
               

               
Conread position:
               
552-756
               

               
Cow position:
               
chr29:32656650-32656445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
106, 167
               

               
Conread position:
               
552-763
               

               
Cow position:
               
chr29:14746993-14746785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
20, 103
               

               
Conread position:
               
553-683
               

               
Cow position:
               
chr29:6716300-6716432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
99, 16
               

               
Conread position:
               
553-709
               

               
Cow position:
               
chr29:14828017-14828172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
108, 16
               

               
Conread position:
               
553-726
               

               
Cow position:
               
chr29:22776289-22776120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
553-747
               

               
Cow position:
               
chr29:22613636-22613450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
15, 50
               

               
Conread position:
               
554-695
               

               
Cow position:
               
chr29:20529149-20529008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
121, 100
               

               
Conread position:
               
554-708
               

               
Cow position:
               
chr29:4741177-4741334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
554-714
               

               
Cow position:
               
chr29:18577655-18577497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
14, 97
               

               
Conread position:
               
554-727
               

               
Cow position:
               
chr29:21196441-21196609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
554-727
               

               
Cow position:
               
chr29:23142120-23142294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
101, 164
               

               
Conread position:
               
554-732
               

               
Cow position:
               
chr29:7414706-7414536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
554-744
               

               
Cow position:
               
chr29:8798800-8798992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
88, 25
               

               
Conread position:
               
555-718
               

               
Cow position:
               
chr29:35501449-35501607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
21, 72
               

               
Conread position:
               
555-744
               

               
Cow position:
               
chr29:27911803-27911614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
104, 154
               

               
Conread position:
               
555-744
               

               
Cow position:
               
chr29:27926985-27926797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
107, 78
               

               
Conread position:
               
555-754
               

               
Cow position:
               
chr29:22534174-22533974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
100, 163
               

               
Conread position:
               
556-727
               

               
Cow position:
               
chr29:35259195-35259025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
14, 48
               

               
Conread position:
               
556-747
               

               
Cow position:
               
chr29:3293153-3292968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
557-733
               

               
Cow position:
               
chr29:5770002-5769832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
28, 15
               

               
Conread position:
               
558-714
               

               
Cow position:
               
chr29:29183935-29183773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
10, 143
               

               
Conread position:
               
558-714
               

               
Cow position:
               
chr29:33321557-33321398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
558-726
               

               
Cow position:
               
chr29:34675795-34675968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
10, 51
               

               
Conread position:
               
558-757
               

               
Cow position:
               
chr29:42405157-42404957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
104, 160
               

               
Conread position:
               
559-647
               

               
Cow position:
               
chr29:9622500-9622589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
90
               

               
Alignm identity:
               
78
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
559-699
               

               
Cow position:
               
chr29:570639-570773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
559-707
               

               
Cow position:
               
chr29:10839149-10838999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
9, 95
               

               
Conread position:
               
559-726
               

               
Cow position:
               
chr29:16438565-16438738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
77, 164
               

               
Conread position:
               
559-726
               

               
Cow position:
               
chr29:16735433-16735265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
99, 159
               

               
Conread position:
               
559-726
               

               
Cow position:
               
chr29:20685379-20685210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
19, 160
               

               
Conread position:
               
559-726
               

               
Cow position:
               
chr29:24605105-24604937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
14, 159
               

               
Conread position:
               
559-743
               

               
Cow position:
               
chr29:41112682-41112857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
18, 57
               

               
Conread position:
               
559-746
               

               
Cow position:
               
chr29:5408932-5409120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
11, 159
               

               
Conread position:
               
559-746
               

               
Cow position:
               
chr29:9709903-9709716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
9, 80
               

               
Conread position:
               
559-747
               

               
Cow position:
               
chr29:32215911-32215729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
559-749
               

               
Cow position:
               
chr29:5953649-5953841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
75, 160
               

               
Conread position:
               
559-750
               

               
Cow position:
               
chr29:5893056-5892862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
10, 43
               

               
Conread position:
               
559-750
               

               
Cow position:
               
chr29:24065894-24065703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
8, 158
               

               
Conread position:
               
560-727
               

               
Cow position:
               
chr29:38858005-38858173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
12, 59
               

               
Conread position:
               
560-740
               

               
Cow position:
               
chr29:11081186-11081369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
13, 160
               

               
Conread position:
               
560-747
               

               
Cow position:
               
chr29:15798157-15797972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
82, 39
               

               
Conread position:
               
560-759
               

               
Cow position:
               
chr29:10994717-10994518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
182, 163
               

               
Conread position:
               
561-718
               

               
Cow position:
               
chr29:16561568-16561723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
8, 91
               

               
Conread position:
               
561-730
               

               
Cow position:
               
chr29:30920195-30920366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
92, 52
               

               
Conread position:
               
561-732
               

               
Cow position:
               
chr29:19187231-19187061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
75, 98
               

               
Conread position:
               
562-786
               

               
Cow position:
               
chr29:15947373-15947150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
99, 156
               

               
Conread position:
               
563-659
               

               
Cow position:
               
chr29:9924370-9924466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
97
               

               
Alignm identity:
               
82
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
563-714
               

               
Cow position:
               
chr29:23734883-23735037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
563-726
               

               
Cow position:
               
chr29:25030073-25030236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
89, 154
               

               
Conread position:
               
563-727
               

               
Cow position:
               
chr29:26539434-26539275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
95, 72
               

               
Conread position:
               
563-732
               

               
Cow position:
               
chr29:17110156-17109992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
565-746
               

               
Cow position:
               
chr29:40117766-40117593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
566-694
               

               
Cow position:
               
chr29:35485777-35485652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
567-705
               

               
Cow position:
               
chr29:33550974-33551105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
567-719
               

               
Cow position:
               
chr29:23711705-23711860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
567-746
               

               
Cow position:
               
chr29:10058343-10058514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
5, 33
               

               
Conread position:
               
568-738
               

               
Cow position:
               
chr29:33143158-33143325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
569-694
               

               
Cow position:
               
chr29:28727021-28726898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
569-705
               

               
Cow position:
               
chr29:11887458-11887328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
569-709
               

               
Cow position:
               
chr29:2070999-2071148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
569-712
               

               
Cow position:
               
chr29:4023193-4023051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
569-713
               

               
Cow position:
               
chr29:11612044-11611897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
569-714
               

               
Cow position:
               
chr29:17085484-17085631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
569-714
               

               
Cow position:
               
chr29:29296585-29296445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
569-718
               

               
Cow position:
               
chr29:24660874-24660732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
569-718
               

               
Cow position:
               
chr29:28715034-28715187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
569-721
               

               
Cow position:
               
chr29:8841252-8841403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
145, 81
               

               
Conread position:
               
569-724
               

               
Cow position:
               
chr29:36357325-36357169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
92, 149
               

               
Conread position:
               
569-724
               

               
Cow position:
               
chr29:36546585-36546739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
65, 87
               

               
Conread position:
               
569-727
               

               
Cow position:
               
chr29:18449941-18450098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
92, 147
               

               
Conread position:
               
569-727
               

               
Cow position:
               
chr29:19420423-19420573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
569-732
               

               
Cow position:
               
chr29:17297335-17297171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
92, 149
               

               
Conread position:
               
569-732
               

               
Cow position:
               
chr29:22028764-22028920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
569-747
               

               
Cow position:
               
chr29:501397-501217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
18, 6
               

               
Conread position:
               
569-747
               

               
Cow position:
               
chr29:19363905-19363731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
569-747
               

               
Cow position:
               
chr29:20167620-20167444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
92, 36
               

               
Conread position:
               
569-747
               

               
Cow position:
               
chr29:26540343-26540520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
81, 147
               

               
Conread position:
               
569-747
               

               
Cow position:
               
chr29:28813775-28813954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
89, 149
               

               
Conread position:
               
569-747
               

               
Cow position:
               
chr29:36531063-36530887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
158, 146
               

               
Conread position:
               
569-749
               

               
Cow position:
               
chr29:1615124-1614947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
569-749
               

               
Cow position:
               
chr29:26631246-26631059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
87, 155
               

               
Conread position:
               
569-749
               

               
Cow position:
               
chr29:36781113-36781286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
569-750
               

               
Cow position:
               
chr29:9378832-9378654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
569-750
               

               
Cow position:
               
chr29:20781217-20781035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
90, 151
               

               
Conread position:
               
569-768
               

               
Cow position:
               
chr29:14577054-14576857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
187, 88
               

               
Conread position:
               
569-768
               

               
Cow position:
               
chr29:23698167-23697977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
164, 28
               

               
Conread position:
               
570-718
               

               
Cow position:
               
chr29:24187867-24188018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
570-732
               

               
Cow position:
               
chr29:43311346-43311513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
67, 150
               

               
Conread position:
               
570-749
               

               
Cow position:
               
chr29:40763500-40763676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
571-688
               

               
Cow position:
               
chr29:6337845-6337727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
86, 7
               

               
Conread position:
               
571-713
               

               
Cow position:
               
chr29:38754743-38754885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
571-732
               

               
Cow position:
               
chr29:25092299-25092141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
571-740
               

               
Cow position:
               
chr29:32655899-32656065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
571-747
               

               
Cow position:
               
chr29:2744074-2744247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
93, 107
               

               
Conread position:
               
571-747
               

               
Cow position:
               
chr29:22576983-22577159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
90, 146
               

               
Conread position:
               
571-747
               

               
Cow position:
               
chr29:30827603-30827426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
89, 147
               

               
Conread position:
               
571-747
               

               
Cow position:
               
chr29:41531046-41530870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
89, 103
               

               
Conread position:
               
571-750
               

               
Cow position:
               
chr29:23874657-23874477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
90, 147
               

               
Conread position:
               
571-764
               

               
Cow position:
               
chr29:23819189-23819386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
65, 151
               

               
Conread position:
               
572-732
               

               
Cow position:
               
chr29:43088500-43088343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
89, 80
               

               
Conread position:
               
572-757
               

               
Cow position:
               
chr29:40426206-40426387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
81, 43
               

               
Conread position:
               
573-713
               

               
Cow position:
               
chr29:26259669-26259536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
573-726
               

               
Cow position:
               
chr29:11685362-11685208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
89, 143
               

               
Conread position:
               
573-726
               

               
Cow position:
               
chr29:37618501-37618347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
88, 145
               

               
Conread position:
               
573-727
               

               
Cow position:
               
chr29:29057372-29057215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
19, 147
               

               
Conread position:
               
573-744
               

               
Cow position:
               
chr29:43099556-43099722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
573-747
               

               
Cow position:
               
chr29:34297378-34297548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
574-726
               

               
Cow position:
               
chr29:7125014-7124859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
7, 146
               

               
Conread position:
               
574-732
               

               
Cow position:
               
chr29:22652511-22652358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
576-747
               

               
Cow position:
               
chr29:21443151-21443318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
85, 26
               

               
Conread position:
               
578-716
               

               
Cow position:
               
chr29:4053156-4053291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
578-744
               

               
Cow position:
               
chr29:18878294-18878458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
84, 21
               

               
Conread position:
               
578-747
               

               
Cow position:
               
chr29:4423262-4423419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
580-740
               

               
Cow position:
               
chr29:26017314-26017475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
78, 139
               

               
Conread position:
               
580-745
               

               
Cow position:
               
chr29:23825026-23825188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
580-747
               

               
Cow position:
               
chr29:16609936-16609768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
78, 138
               

               
Conread position:
               
584-727
               

               
Cow position:
               
chr29:22128046-22127910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
584-727
               

               
Cow position:
               
chr29:24365715-24365857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
74, 119
               

               
Conread position:
               
584-744
               

               
Cow position:
               
chr29:23991647-23991807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
78, 134
               

               
Conread position:
               
585-749
               

               
Cow position:
               
chr29:22723777-22723619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
585-749
               

               
Cow position:
               
chr29:36632679-36632842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
70, 63
               

               
Conread position:
               
586-726
               

               
Cow position:
               
chr29:38582150-38582009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
69, 132
               

               
Conread position:
               
588-732
               

               
Cow position:
               
chr29:28257320-28257176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
68, 129
               

               
Conread position:
               
601-771
               

               
Cow position:
               
chr29:27042441-27042269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
39, 119
               
Show alignments to all cow chromosomes.