Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8022B12.3 |
| Conread position: | 193-460 |
| Cow position: | chr13:57026120-57026380 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 163, 23 |
| Conread position: | 208-451 |
| Cow position: | chr13:54239165-54238918 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 12, 99 |
| Conread position: | 216-441 |
| Cow position: | chr13:669517-669738 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 138, 89 |
| Conread position: | 217-421 |
| Cow position: | chr13:32536647-32536437 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 53, 94 |
| Conread position: | 217-425 |
| Cow position: | chr13:21906664-21906442 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 217-429 |
| Cow position: | chr13:44324685-44324461 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 217-435 |
| Cow position: | chr13:49975947-49976160 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 140, 44 |
| Conread position: | 217-435 |
| Cow position: | chr13:50111741-50111957 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 140, 91 |
| Conread position: | 217-437 |
| Cow position: | chr13:19394750-19394534 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 140, 49 |
| Conread position: | 217-441 |
| Cow position: | chr13:15922186-15921960 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 138, 88 |
| Conread position: | 217-441 |
| Cow position: | chr13:22275083-22275299 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 217-460 |
| Cow position: | chr13:5516055-5515810 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 139, 91 |
| Conread position: | 217-487 |
| Cow position: | chr13:33334076-33333809 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 53, 60 |
| Conread position: | 218-441 |
| Cow position: | chr13:19842789-19843006 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 138, 65 |
| Conread position: | 223-396 |
| Cow position: | chr13:32794983-32795156 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 133, 44 |
| Conread position: | 223-424 |
| Cow position: | chr13:36347841-36347638 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 120, 44 |
| Conread position: | 224-431 |
| Cow position: | chr13:13902140-13902349 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 135, 81 |
| Conread position: | 224-433 |
| Cow position: | chr13:19565997-19566208 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 133, 84 |
| Conread position: | 224-435 |
| Cow position: | chr13:16806875-16807088 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 133, 84 |
| Conread position: | 224-435 |
| Cow position: | chr13:24932514-24932301 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 133, 84 |
| Conread position: | 224-435 |
| Cow position: | chr13:32080143-32080356 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 140, 84 |
| Conread position: | 224-435 |
| Cow position: | chr13:36671934-36672148 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 24, 85 |
| Conread position: | 224-437 |
| Cow position: | chr13:6360145-6360360 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 133, 84 |
| Conread position: | 224-437 |
| Cow position: | chr13:18122592-18122377 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 133, 84 |
| Conread position: | 224-437 |
| Cow position: | chr13:54145083-54145290 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 133, 81 |
| Conread position: | 224-437 |
| Cow position: | chr13:60698520-60698308 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 41, 14 |
| Conread position: | 224-438 |
| Cow position: | chr13:30036007-30035803 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 132, 81 |
| Conread position: | 224-438 |
| Cow position: | chr13:30240829-30241042 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 97, 78 |
| Conread position: | 224-438 |
| Cow position: | chr13:32983119-32982903 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 133, 84 |
| Conread position: | 224-438 |
| Cow position: | chr13:34040062-34039846 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 132, 84 |
| Conread position: | 224-441 |
| Cow position: | chr13:3555690-3555909 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 133, 84 |
| Conread position: | 224-441 |
| Cow position: | chr13:4943664-4943883 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 132, 84 |
| Conread position: | 224-441 |
| Cow position: | chr13:9300450-9300668 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 132, 84 |
| Conread position: | 224-441 |
| Cow position: | chr13:11738035-11738254 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 133, 89 |
| Conread position: | 224-441 |
| Cow position: | chr13:13327222-13327436 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 133, 47 |
| Conread position: | 224-441 |
| Cow position: | chr13:13333676-13333459 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 133, 46 |
| Conread position: | 224-441 |
| Cow position: | chr13:21401125-21401343 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 133, 11 |
| Conread position: | 224-441 |
| Cow position: | chr13:23455718-23455935 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 133, 84 |
| Conread position: | 224-441 |
| Cow position: | chr13:34050979-34051202 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 182 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 99, 60 |
| Conread position: | 224-441 |
| Cow position: | chr13:34509531-34509318 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 133, 59 |
| Conread position: | 224-441 |
| Cow position: | chr13:34870241-34870458 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 130, 83 |
| Conread position: | 224-441 |
| Cow position: | chr13:35539445-35539664 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 133, 84 |
| Conread position: | 224-441 |
| Cow position: | chr13:43891512-43891731 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 133, 89 |
| Conread position: | 224-441 |
| Cow position: | chr13:47024075-47024294 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 139, 89 |
| Conread position: | 224-441 |
| Cow position: | chr13:51006745-51006526 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 133, 84 |
| Conread position: | 224-441 |
| Cow position: | chr13:51465920-51465701 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 133, 89 |
| Conread position: | 224-441 |
| Cow position: | chr13:60647302-60647087 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 140, 48 |
| Conread position: | 224-460 |
| Cow position: | chr13:15559614-15559852 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 132, 80 |
| Conread position: | 224-460 |
| Cow position: | chr13:18330847-18330609 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 132, 84 |
| Conread position: | 224-460 |
| Cow position: | chr13:19637425-19637662 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 132, 17 |
| Conread position: | 224-460 |
| Cow position: | chr13:30470096-30469859 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 46, 61 |
| Conread position: | 224-460 |
| Cow position: | chr13:31609158-31608924 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 122, 26 |
| Conread position: | 224-460 |
| Cow position: | chr13:32549038-32549276 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 46, 61 |
| Conread position: | 224-460 |
| Cow position: | chr13:32734908-32734670 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 46, 61 |
| Conread position: | 224-460 |
| Cow position: | chr13:32922992-32922758 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 132, 46 |
| Conread position: | 224-460 |
| Cow position: | chr13:35759836-35760074 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 132, 89 |
| Conread position: | 224-465 |
| Cow position: | chr13:17310698-17310940 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 133, 42 |
| Conread position: | 224-465 |
| Cow position: | chr13:32724247-32724487 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 133, 47 |
| Conread position: | 224-590 |
| Cow position: | chr13:4486133-4486498 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 235 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 132, 84 |
| Conread position: | 225-435 |
| Cow position: | chr13:644693-644481 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 132, 83 |
| Conread position: | 225-437 |
| Cow position: | chr13:58717836-58718048 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 132, 80 |
| Conread position: | 226-438 |
| Cow position: | chr13:3481581-3481372 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 130, 31 |
| Conread position: | 226-438 |
| Cow position: | chr13:50080899-50080685 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 132, 82 |
| Conread position: | 226-441 |
| Cow position: | chr13:47729315-47729532 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 131, 87 |
| Conread position: | 226-460 |
| Cow position: | chr13:6665853-6665617 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 131, 79 |
| Conread position: | 232-437 |
| Cow position: | chr13:30652998-30652795 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 125, 73 |
| Conread position: | 232-441 |
| Cow position: | chr13:22080872-22080666 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 28, 34 |
| Conread position: | 232-441 |
| Cow position: | chr13:32776783-32776574 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 124, 35 |
| Conread position: | 232-441 |
| Cow position: | chr13:39042074-39041858 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 35, 79 |
| Conread position: | 233-541 |
| Cow position: | chr13:34332030-34332340 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 210 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 37, 55 |
| Conread position: | 234-441 |
| Cow position: | chr13:12658913-12659124 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 47, 32 |
| Conread position: | 237-441 |
| Cow position: | chr13:32254060-32253854 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 120, 76 |
| Conread position: | 244-441 |
| Cow position: | chr13:53543875-53543678 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 129, 58 |
| Conread position: | 315-441 |
| Cow position: | chr13:31793598-31793470 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 11, 102 |
| Conread position: | 318-446 |
| Cow position: | chr13:46489565-46489434 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 564-696 |
| Cow position: | chr13:44324025-44323880 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 17, 0 |
Show alignments to all cow chromosomes.