Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8022B12.3 |
| Conread position: | 216-432 |
| Cow position: | chr17:28025716-28025498 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 139, 89 |
| Conread position: | 216-435 |
| Cow position: | chr17:15140977-15140760 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 141, 55 |
| Conread position: | 217-398 |
| Cow position: | chr17:33791232-33791421 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 59, 102 |
| Conread position: | 217-432 |
| Cow position: | chr17:5044848-5044635 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 144, 66 |
| Conread position: | 217-436 |
| Cow position: | chr17:5999124-5998906 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 140, 91 |
| Conread position: | 217-436 |
| Cow position: | chr17:19368278-19368489 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 140, 53 |
| Conread position: | 217-441 |
| Cow position: | chr17:16119868-16119642 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 140, 88 |
| Conread position: | 217-441 |
| Cow position: | chr17:18590792-18591013 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 140, 72 |
| Conread position: | 217-441 |
| Cow position: | chr17:33290606-33290368 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 47, 184 |
| Conread position: | 217-460 |
| Cow position: | chr17:20490675-20490922 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 54, 89 |
| Conread position: | 219-438 |
| Cow position: | chr17:43146209-43145984 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 219-441 |
| Cow position: | chr17:4297277-4297494 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 139, 52 |
| Conread position: | 220-439 |
| Cow position: | chr17:14233238-14233011 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 129, 81 |
| Conread position: | 220-441 |
| Cow position: | chr17:20090297-20090064 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 48, 172 |
| Conread position: | 221-441 |
| Cow position: | chr17:10842635-10842855 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 136, 87 |
| Conread position: | 223-437 |
| Cow position: | chr17:14394034-14394243 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 133, 52 |
| Conread position: | 224-419 |
| Cow position: | chr17:4481508-4481311 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 133, 84 |
| Conread position: | 224-428 |
| Cow position: | chr17:147303-147509 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 133, 81 |
| Conread position: | 224-433 |
| Cow position: | chr17:16855725-16855514 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 132, 84 |
| Conread position: | 224-433 |
| Cow position: | chr17:16903255-16903462 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 132, 81 |
| Conread position: | 224-433 |
| Cow position: | chr17:22107273-22107062 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 132, 84 |
| Conread position: | 224-435 |
| Cow position: | chr17:15808344-15808557 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 46, 53 |
| Conread position: | 224-436 |
| Cow position: | chr17:137012-137229 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 108, 84 |
| Conread position: | 224-436 |
| Cow position: | chr17:20097944-20097735 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 133, 51 |
| Conread position: | 224-437 |
| Cow position: | chr17:1458764-1458973 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 37, 79 |
| Conread position: | 224-437 |
| Cow position: | chr17:2264558-2264773 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 132, 84 |
| Conread position: | 224-438 |
| Cow position: | chr17:15853093-15853309 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 132, 84 |
| Conread position: | 224-438 |
| Cow position: | chr17:24027624-24027409 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 132, 84 |
| Conread position: | 224-438 |
| Cow position: | chr17:38828288-38828500 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 135, 18 |
| Conread position: | 224-441 |
| Cow position: | chr17:40675-40894 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 133, 89 |
| Conread position: | 224-441 |
| Cow position: | chr17:1655381-1655163 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 135, 76 |
| Conread position: | 224-441 |
| Cow position: | chr17:2176354-2176568 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 132, 81 |
| Conread position: | 224-441 |
| Cow position: | chr17:3742533-3742752 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 133, 89 |
| Conread position: | 224-441 |
| Cow position: | chr17:5307366-5307147 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 133, 89 |
| Conread position: | 224-441 |
| Cow position: | chr17:8211024-8211244 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 102, 84 |
| Conread position: | 224-441 |
| Cow position: | chr17:13418773-13418987 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 224-441 |
| Cow position: | chr17:13921102-13920882 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 169 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 90, 63 |
| Conread position: | 224-441 |
| Cow position: | chr17:14214664-14214446 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 48, 25 |
| Conread position: | 224-441 |
| Cow position: | chr17:14242197-14242416 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 132, 84 |
| Conread position: | 224-441 |
| Cow position: | chr17:15327656-15327865 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 131, 37 |
| Conread position: | 224-441 |
| Cow position: | chr17:15709620-15709410 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 224-441 |
| Cow position: | chr17:29825592-29825378 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 130, 37 |
| Conread position: | 224-442 |
| Cow position: | chr17:20092216-20092018 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 224-452 |
| Cow position: | chr17:11785250-11785482 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 133, 84 |
| Conread position: | 224-452 |
| Cow position: | chr17:17127340-17127572 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 139, 84 |
| Conread position: | 224-460 |
| Cow position: | chr17:2582652-2582890 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 41, 62 |
| Conread position: | 224-460 |
| Cow position: | chr17:4062702-4062941 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 132, 84 |
| Conread position: | 224-460 |
| Cow position: | chr17:6070907-6071140 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 168 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 131, 46 |
| Conread position: | 224-460 |
| Cow position: | chr17:8222060-8222297 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 132, 84 |
| Conread position: | 224-460 |
| Cow position: | chr17:14030475-14030237 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 139, 89 |
| Conread position: | 224-465 |
| Cow position: | chr17:23322057-23321814 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 133, 78 |
| Conread position: | 224-472 |
| Cow position: | chr17:6262233-6262468 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 224-583 |
| Cow position: | chr17:18100711-18100351 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 242 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 132, 84 |
| Conread position: | 224-605 |
| Cow position: | chr17:25738670-25739054 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 133, 84 |
| Conread position: | 226-441 |
| Cow position: | chr17:22562520-22562739 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 133, 79 |
| Conread position: | 226-441 |
| Cow position: | chr17:35300167-35299947 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 226-444 |
| Cow position: | chr17:17530550-17530770 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 134, 82 |
| Conread position: | 226-460 |
| Cow position: | chr17:13930266-13930500 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 131, 81 |
| Conread position: | 232-396 |
| Cow position: | chr17:16446029-16445861 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 38, 23 |
| Conread position: | 232-460 |
| Cow position: | chr17:15373784-15374014 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 129, 76 |
| Conread position: | 233-447 |
| Cow position: | chr17:9901377-9901589 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 127, 31 |
| Conread position: | 233-539 |
| Cow position: | chr17:732111-731804 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 123, 75 |
| Conread position: | 234-441 |
| Cow position: | chr17:604685-604473 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 239-441 |
| Cow position: | chr17:6080891-6081095 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 46, 78 |
| Conread position: | 246-492 |
| Cow position: | chr17:18823460-18823699 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 113, 38 |
| Conread position: | 248-435 |
| Cow position: | chr17:17069310-17069497 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 44, 28 |
| Conread position: | 260-420 |
| Cow position: | chr17:19888585-19888748 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 12, 49 |
| Conread position: | 264-415 |
| Cow position: | chr17:27482791-27482944 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 83, 20 |
| Conread position: | 297-479 |
| Cow position: | chr17:4781912-4781734 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 313-441 |
| Cow position: | chr17:5377257-5377388 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 313-441 |
| Cow position: | chr17:33935387-33935254 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 47, 0 |
Show alignments to all cow chromosomes.