Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8022B12.3 |
| Conread position: | 205-437 |
| Cow position: | chr18:5077500-5077257 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 5, 112 |
| Conread position: | 216-438 |
| Cow position: | chr18:29120610-29120822 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 140, 80 |
| Conread position: | 217-402 |
| Cow position: | chr18:32770324-32770509 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 140, 66 |
| Conread position: | 217-407 |
| Cow position: | chr18:46874825-46874644 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 140, 66 |
| Conread position: | 217-409 |
| Cow position: | chr18:16136069-16135881 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 68, 92 |
| Conread position: | 217-437 |
| Cow position: | chr18:36253105-36252887 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 139, 68 |
| Conread position: | 217-441 |
| Cow position: | chr18:10221612-10221837 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 147, 35 |
| Conread position: | 217-441 |
| Cow position: | chr18:16472600-16472357 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 217-441 |
| Cow position: | chr18:17095396-17095617 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 53, 60 |
| Conread position: | 217-472 |
| Cow position: | chr18:14046865-14047110 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 140, 66 |
| Conread position: | 223-438 |
| Cow position: | chr18:29864018-29863801 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 137, 85 |
| Conread position: | 224-429 |
| Cow position: | chr18:30762369-30762162 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 133, 89 |
| Conread position: | 224-435 |
| Cow position: | chr18:29071016-29071229 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 133, 84 |
| Conread position: | 224-435 |
| Cow position: | chr18:32437513-32437301 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 139, 84 |
| Conread position: | 224-435 |
| Cow position: | chr18:51344693-51344906 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 133, 84 |
| Conread position: | 224-435 |
| Cow position: | chr18:55417313-55417526 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 133, 89 |
| Conread position: | 224-436 |
| Cow position: | chr18:15171464-15171684 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 14, 91 |
| Conread position: | 224-436 |
| Cow position: | chr18:22182940-22182736 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 224-438 |
| Cow position: | chr18:36647763-36647977 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 157 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 121, 43 |
| Conread position: | 224-438 |
| Cow position: | chr18:37508553-37508769 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 132, 84 |
| Conread position: | 224-438 |
| Cow position: | chr18:37540302-37540514 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 137, 37 |
| Conread position: | 224-441 |
| Cow position: | chr18:1956580-1956361 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 133, 89 |
| Conread position: | 224-441 |
| Cow position: | chr18:3755533-3755752 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 133, 89 |
| Conread position: | 224-441 |
| Cow position: | chr18:5202115-5202334 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 133, 84 |
| Conread position: | 224-441 |
| Cow position: | chr18:14418565-14418784 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 46, 61 |
| Conread position: | 224-441 |
| Cow position: | chr18:16081114-16081333 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 132, 84 |
| Conread position: | 224-441 |
| Cow position: | chr18:16174018-16173803 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 132, 47 |
| Conread position: | 224-441 |
| Cow position: | chr18:18216097-18216316 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 133, 84 |
| Conread position: | 224-441 |
| Cow position: | chr18:22411976-22412200 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 46, 91 |
| Conread position: | 224-441 |
| Cow position: | chr18:54066458-54066243 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 140, 47 |
| Conread position: | 224-452 |
| Cow position: | chr18:32165340-32165112 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 133, 47 |
| Conread position: | 224-460 |
| Cow position: | chr18:16092407-16092645 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 132, 84 |
| Conread position: | 224-460 |
| Cow position: | chr18:23702494-23702256 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 131, 81 |
| Conread position: | 224-460 |
| Cow position: | chr18:23801611-23801849 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 165 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 131, 81 |
| Conread position: | 224-460 |
| Cow position: | chr18:28929002-28928764 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 41, 25 |
| Conread position: | 224-460 |
| Cow position: | chr18:36511209-36511443 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 131, 81 |
| Conread position: | 224-460 |
| Cow position: | chr18:51484186-51484420 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 131, 81 |
| Conread position: | 224-465 |
| Cow position: | chr18:39293433-39293189 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 133, 84 |
| Conread position: | 224-478 |
| Cow position: | chr18:28969698-28969441 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 40, 61 |
| Conread position: | 224-478 |
| Cow position: | chr18:56484089-56483835 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 135, 84 |
| Conread position: | 225-454 |
| Cow position: | chr18:52655402-52655632 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 131, 82 |
| Conread position: | 226-425 |
| Cow position: | chr18:9356288-9356086 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 226-452 |
| Cow position: | chr18:603870-603644 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 131, 45 |
| Conread position: | 226-453 |
| Cow position: | chr18:16275128-16274903 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 65, 23 |
| Conread position: | 229-437 |
| Cow position: | chr18:38090761-38090553 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 130, 18 |
| Conread position: | 233-466 |
| Cow position: | chr18:25957367-25957603 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 124, 75 |
| Conread position: | 234-441 |
| Cow position: | chr18:700173-699965 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 123, 49 |
| Conread position: | 234-460 |
| Cow position: | chr18:11869088-11869312 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 123, 37 |
| Conread position: | 237-435 |
| Cow position: | chr18:52630655-52630457 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 120, 29 |
| Conread position: | 241-460 |
| Cow position: | chr18:28211182-28210962 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 117, 67 |
| Conread position: | 245-445 |
| Cow position: | chr18:1932365-1932166 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 109, 63 |
| Conread position: | 248-469 |
| Cow position: | chr18:54168036-54167813 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 113, 216 |
| Conread position: | 250-469 |
| Cow position: | chr18:42244319-42244093 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 66, 14 |
| Conread position: | 257-426 |
| Cow position: | chr18:36310327-36310498 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 99, 51 |
| Conread position: | 280-441 |
| Cow position: | chr18:13965319-13965158 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 75, 27 |
| Conread position: | 290-441 |
| Cow position: | chr18:13509380-13509231 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 71, 31 |
| Conread position: | 304-438 |
| Cow position: | chr18:33605412-33605546 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 57, 12 |
| Conread position: | 308-425 |
| Cow position: | chr18:22791767-22791647 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 102 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 310-463 |
| Cow position: | chr18:42517530-42517686 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 16, 147 |
Show alignments to all cow chromosomes.