Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8022B12.3 |
| Conread position: | 201-441 |
| Cow position: | chr19:35382583-35382337 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 188 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 9, 150 |
| Conread position: | 216-435 |
| Cow position: | chr19:5901155-5901376 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 148, 92 |
| Conread position: | 216-441 |
| Cow position: | chr19:673195-672970 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 65, 51 |
| Conread position: | 216-441 |
| Cow position: | chr19:36418587-36418809 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 145, 68 |
| Conread position: | 217-429 |
| Cow position: | chr19:35620808-35621021 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 170 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 140, 74 |
| Conread position: | 217-435 |
| Cow position: | chr19:40849899-40849679 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 146, 88 |
| Conread position: | 217-436 |
| Cow position: | chr19:3176062-3176278 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 140, 59 |
| Conread position: | 217-436 |
| Cow position: | chr19:38559700-38559482 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 140, 91 |
| Conread position: | 217-438 |
| Cow position: | chr19:39749816-39750029 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 133, 63 |
| Conread position: | 217-441 |
| Cow position: | chr19:1151270-1151486 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 143, 21 |
| Conread position: | 217-441 |
| Cow position: | chr19:2587790-2588006 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 171 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 217-441 |
| Cow position: | chr19:3402412-3402195 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 155, 91 |
| Conread position: | 217-441 |
| Cow position: | chr19:5248197-5247982 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 53, 40 |
| Conread position: | 217-441 |
| Cow position: | chr19:20126611-20126828 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 53, 67 |
| Conread position: | 217-441 |
| Cow position: | chr19:35612239-35612019 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 90 |
| Conread position: | 217-441 |
| Cow position: | chr19:42297537-42297302 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 53, 100 |
| Conread position: | 217-441 |
| Cow position: | chr19:42581694-42581475 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 142, 72 |
| Conread position: | 217-441 |
| Cow position: | chr19:44460859-44460635 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 132, 72 |
| Conread position: | 217-458 |
| Cow position: | chr19:39182951-39182712 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 139, 91 |
| Conread position: | 217-460 |
| Cow position: | chr19:1586667-1586426 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 138, 88 |
| Conread position: | 217-461 |
| Cow position: | chr19:17882541-17882778 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 140, 51 |
| Conread position: | 224-433 |
| Cow position: | chr19:7344628-7344839 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 130, 37 |
| Conread position: | 224-433 |
| Cow position: | chr19:7481342-7481131 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 133, 84 |
| Conread position: | 224-434 |
| Cow position: | chr19:20107336-20107548 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 140, 84 |
| Conread position: | 224-435 |
| Cow position: | chr19:20610927-20611140 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 118, 84 |
| Conread position: | 224-435 |
| Cow position: | chr19:52148951-52148742 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 132, 47 |
| Conread position: | 224-438 |
| Cow position: | chr19:12775718-12775934 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 131, 102 |
| Conread position: | 224-440 |
| Cow position: | chr19:207099-207312 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 224-441 |
| Cow position: | chr19:40928-41147 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 140, 84 |
| Conread position: | 224-441 |
| Cow position: | chr19:474903-474684 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 133, 84 |
| Conread position: | 224-441 |
| Cow position: | chr19:1354970-1354754 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 92, 149 |
| Conread position: | 224-441 |
| Cow position: | chr19:16318014-16317797 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 133, 31 |
| Conread position: | 224-441 |
| Cow position: | chr19:22390863-22390644 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 133, 84 |
| Conread position: | 224-441 |
| Cow position: | chr19:33944164-33944379 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 132, 47 |
| Conread position: | 224-441 |
| Cow position: | chr19:40834669-40834450 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 135, 84 |
| Conread position: | 224-441 |
| Cow position: | chr19:40885151-40884933 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 134, 79 |
| Conread position: | 224-452 |
| Cow position: | chr19:1585062-1585293 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 123, 84 |
| Conread position: | 224-460 |
| Cow position: | chr19:436742-436505 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 132, 20 |
| Conread position: | 224-460 |
| Cow position: | chr19:890603-890365 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 165 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 132, 84 |
| Conread position: | 224-460 |
| Cow position: | chr19:4388175-4388414 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 131, 81 |
| Conread position: | 224-460 |
| Cow position: | chr19:5732100-5732335 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 25, 48 |
| Conread position: | 224-460 |
| Cow position: | chr19:7490693-7490931 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 132, 84 |
| Conread position: | 224-460 |
| Cow position: | chr19:12553641-12553402 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 61, 85 |
| Conread position: | 224-460 |
| Cow position: | chr19:30517400-30517634 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 131, 43 |
| Conread position: | 224-460 |
| Cow position: | chr19:33876010-33876248 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 132, 81 |
| Conread position: | 224-461 |
| Cow position: | chr19:2270704-2270465 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 132, 84 |
| Conread position: | 224-488 |
| Cow position: | chr19:3113911-3114172 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 127, 81 |
| Conread position: | 226-416 |
| Cow position: | chr19:42723920-42724123 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 226-441 |
| Cow position: | chr19:3586545-3586329 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 133, 82 |
| Conread position: | 231-441 |
| Cow position: | chr19:14157653-14157438 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 167 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 233-437 |
| Cow position: | chr19:159253-159045 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 48, 74 |
| Conread position: | 233-441 |
| Cow position: | chr19:18359700-18359488 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 80, 98 |
| Conread position: | 242-441 |
| Cow position: | chr19:6439805-6440006 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 121, 66 |
| Conread position: | 277-441 |
| Cow position: | chr19:9386974-9387137 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 31, 0 |
Show alignments to all cow chromosomes.