Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8022B12.3 |
| Conread position: | 200-436 |
| Cow position: | chr21:32831597-32831372 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 202-425 |
| Cow position: | chr21:44293947-44293724 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 155, 106 |
| Conread position: | 217-308 |
| Cow position: | chr21:22462856-22462947 (view UCSC Genome Browser custom track) |
| Alignm length: | 92 |
| Alignm identity: | 78 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 217-380 |
| Cow position: | chr21:46758570-46758723 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 140, 27 |
| Conread position: | 217-391 |
| Cow position: | chr21:15445910-15445734 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 140, 91 |
| Conread position: | 217-416 |
| Cow position: | chr21:44531861-44532057 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 140, 58 |
| Conread position: | 217-431 |
| Cow position: | chr21:29000591-29000805 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 139, 59 |
| Conread position: | 217-437 |
| Cow position: | chr21:3587397-3587183 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 53, 69 |
| Conread position: | 217-437 |
| Cow position: | chr21:22854584-22854803 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 83, 24 |
| Conread position: | 217-437 |
| Cow position: | chr21:36978246-36978031 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 174 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 140, 53 |
| Conread position: | 217-438 |
| Cow position: | chr21:24886321-24886538 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 65, 20 |
| Conread position: | 217-438 |
| Cow position: | chr21:33984636-33984404 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 217-441 |
| Cow position: | chr21:10852927-10853152 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 53, 60 |
| Conread position: | 217-441 |
| Cow position: | chr21:17224182-17223959 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 142, 58 |
| Conread position: | 217-441 |
| Cow position: | chr21:34072914-34072689 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 141, 96 |
| Conread position: | 217-441 |
| Cow position: | chr21:37039955-37039734 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 140, 88 |
| Conread position: | 217-441 |
| Cow position: | chr21:49091779-49091560 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 66, 92 |
| Conread position: | 219-451 |
| Cow position: | chr21:18011840-18011605 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 14, 89 |
| Conread position: | 223-436 |
| Cow position: | chr21:33998856-33998639 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 56, 212 |
| Conread position: | 223-441 |
| Cow position: | chr21:28879048-28878829 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 134, 72 |
| Conread position: | 223-441 |
| Cow position: | chr21:34656628-34656842 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 141, 82 |
| Conread position: | 224-422 |
| Cow position: | chr21:41891-42093 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 133, 76 |
| Conread position: | 224-433 |
| Cow position: | chr21:26401098-26400887 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 132, 84 |
| Conread position: | 224-433 |
| Cow position: | chr21:27126057-27125846 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 133, 81 |
| Conread position: | 224-435 |
| Cow position: | chr21:19352194-19351981 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 133, 84 |
| Conread position: | 224-435 |
| Cow position: | chr21:27148885-27148672 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 133, 84 |
| Conread position: | 224-435 |
| Cow position: | chr21:42916460-42916673 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 133, 84 |
| Conread position: | 224-437 |
| Cow position: | chr21:26699996-26699782 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 133, 83 |
| Conread position: | 224-438 |
| Cow position: | chr21:2879159-2878943 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 132, 84 |
| Conread position: | 224-441 |
| Cow position: | chr21:166519-166742 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 41 |
| Conread position: | 224-441 |
| Cow position: | chr21:4186615-4186834 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 62, 85 |
| Conread position: | 224-441 |
| Cow position: | chr21:4481965-4482184 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 133, 89 |
| Conread position: | 224-441 |
| Cow position: | chr21:4566665-4566877 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 140, 81 |
| Conread position: | 224-441 |
| Cow position: | chr21:7063001-7062782 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 133, 84 |
| Conread position: | 224-441 |
| Cow position: | chr21:15398307-15398088 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 140, 84 |
| Conread position: | 224-441 |
| Cow position: | chr21:39225388-39225173 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 133, 47 |
| Conread position: | 224-441 |
| Cow position: | chr21:47976676-47976895 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 133, 84 |
| Conread position: | 224-452 |
| Cow position: | chr21:2513520-2513747 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 133, 46 |
| Conread position: | 224-452 |
| Cow position: | chr21:37373895-37374125 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 133, 46 |
| Conread position: | 224-460 |
| Cow position: | chr21:148816-149054 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 132, 84 |
| Conread position: | 224-460 |
| Cow position: | chr21:1195206-1195444 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 134, 84 |
| Conread position: | 224-460 |
| Cow position: | chr21:5019814-5020050 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 131, 84 |
| Conread position: | 224-460 |
| Cow position: | chr21:13112724-13112486 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 61, 51 |
| Conread position: | 224-460 |
| Cow position: | chr21:17143345-17143584 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 132, 84 |
| Conread position: | 224-460 |
| Cow position: | chr21:30596420-30596183 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 132, 83 |
| Conread position: | 224-460 |
| Cow position: | chr21:32397382-32397144 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 118, 84 |
| Conread position: | 224-460 |
| Cow position: | chr21:34255924-34255685 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 134, 42 |
| Conread position: | 224-460 |
| Cow position: | chr21:41797054-41796816 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 140, 84 |
| Conread position: | 224-460 |
| Cow position: | chr21:44763293-44763055 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 46, 53 |
| Conread position: | 224-460 |
| Cow position: | chr21:47648004-47648244 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 224-461 |
| Cow position: | chr21:2665470-2665236 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 224-462 |
| Cow position: | chr21:28987803-28988034 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 133, 46 |
| Conread position: | 224-465 |
| Cow position: | chr21:6966798-6966562 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 133, 37 |
| Conread position: | 224-485 |
| Cow position: | chr21:40268715-40268452 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 238, 84 |
| Conread position: | 224-541 |
| Cow position: | chr21:33256223-33256541 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 132, 84 |
| Conread position: | 226-435 |
| Cow position: | chr21:11328226-11328022 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 157, 79 |
| Conread position: | 226-441 |
| Cow position: | chr21:3781457-3781662 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 226-441 |
| Cow position: | chr21:29002648-29002438 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 86, 16 |
| Conread position: | 226-441 |
| Cow position: | chr21:30564426-30564638 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 130, 35 |
| Conread position: | 226-441 |
| Cow position: | chr21:38019901-38020118 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 131, 49 |
| Conread position: | 226-463 |
| Cow position: | chr21:13285596-13285823 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 226-494 |
| Cow position: | chr21:35390472-35390210 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 95, 17 |
| Conread position: | 226-500 |
| Cow position: | chr21:5543979-5543704 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 131, 87 |
| Conread position: | 227-435 |
| Cow position: | chr21:29909640-29909439 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 130, 17 |
| Conread position: | 227-438 |
| Cow position: | chr21:8836675-8836884 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 131, 62 |
| Conread position: | 234-414 |
| Cow position: | chr21:10285836-10286020 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 68, 41 |
| Conread position: | 237-441 |
| Cow position: | chr21:3922943-3923149 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 120, 71 |
| Conread position: | 237-460 |
| Cow position: | chr21:25189323-25189548 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 122, 71 |
| Conread position: | 289-441 |
| Cow position: | chr21:27429384-27429234 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 68, 18 |
| Conread position: | 289-441 |
| Cow position: | chr21:47361433-47361283 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 68, 19 |
| Conread position: | 292-441 |
| Cow position: | chr21:30352679-30352827 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 65, 16 |
| Conread position: | 295-436 |
| Cow position: | chr21:37151063-37151209 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 19, 0 |
Show alignments to all cow chromosomes.