Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8022B12.3 |
| Conread position: | 200-441 |
| Cow position: | chr23:26307508-26307746 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 20, 76 |
| Conread position: | 217-412 |
| Cow position: | chr23:3878608-3878413 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 138, 67 |
| Conread position: | 217-438 |
| Cow position: | chr23:3452270-3452052 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 142, 18 |
| Conread position: | 217-438 |
| Cow position: | chr23:37200035-37199813 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 138, 88 |
| Conread position: | 217-441 |
| Cow position: | chr23:1800122-1800344 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 139, 53 |
| Conread position: | 217-441 |
| Cow position: | chr23:2438824-2438598 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 113, 88 |
| Conread position: | 217-441 |
| Cow position: | chr23:15039817-15039597 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 48, 73 |
| Conread position: | 217-441 |
| Cow position: | chr23:30238746-30238971 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 90 |
| Conread position: | 217-460 |
| Cow position: | chr23:4308694-4308449 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 138, 88 |
| Conread position: | 223-441 |
| Cow position: | chr23:15568435-15568214 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 31, 86 |
| Conread position: | 224-404 |
| Cow position: | chr23:19166282-19166466 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 30, 87 |
| Conread position: | 224-426 |
| Cow position: | chr23:2024595-2024391 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 46, 61 |
| Conread position: | 224-426 |
| Cow position: | chr23:15528076-15528275 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 131, 81 |
| Conread position: | 224-431 |
| Cow position: | chr23:20153732-20153524 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 125, 81 |
| Conread position: | 224-434 |
| Cow position: | chr23:4891182-4891393 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 132, 18 |
| Conread position: | 224-435 |
| Cow position: | chr23:19621352-19621143 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 133, 47 |
| Conread position: | 224-437 |
| Cow position: | chr23:21773423-21773205 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 224-437 |
| Cow position: | chr23:23283986-23284199 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 135, 81 |
| Conread position: | 224-438 |
| Cow position: | chr23:24119047-24119259 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 134, 47 |
| Conread position: | 224-441 |
| Cow position: | chr23:943467-943686 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 133, 84 |
| Conread position: | 224-441 |
| Cow position: | chr23:1249041-1248822 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 133, 89 |
| Conread position: | 224-441 |
| Cow position: | chr23:2760389-2760608 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 131, 81 |
| Conread position: | 224-441 |
| Cow position: | chr23:3708891-3709110 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 135, 89 |
| Conread position: | 224-441 |
| Cow position: | chr23:4080631-4080850 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 133, 84 |
| Conread position: | 224-441 |
| Cow position: | chr23:4637834-4637615 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 131, 81 |
| Conread position: | 224-441 |
| Cow position: | chr23:5872074-5871855 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 48, 77 |
| Conread position: | 224-441 |
| Cow position: | chr23:6222335-6222559 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 224-441 |
| Cow position: | chr23:8705354-8705569 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 133, 47 |
| Conread position: | 224-441 |
| Cow position: | chr23:19316974-19317193 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 133, 89 |
| Conread position: | 224-441 |
| Cow position: | chr23:21009118-21008899 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 133, 84 |
| Conread position: | 224-441 |
| Cow position: | chr23:22169377-22169596 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 132, 84 |
| Conread position: | 224-441 |
| Cow position: | chr23:22989386-22989171 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 133, 89 |
| Conread position: | 224-441 |
| Cow position: | chr23:34256467-34256248 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 133, 81 |
| Conread position: | 224-441 |
| Cow position: | chr23:36097309-36097528 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 133, 84 |
| Conread position: | 224-452 |
| Cow position: | chr23:14264837-14265068 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 133, 84 |
| Conread position: | 224-460 |
| Cow position: | chr23:5625090-5624851 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 34, 82 |
| Conread position: | 224-460 |
| Cow position: | chr23:8289911-8290149 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 84, 65 |
| Conread position: | 224-460 |
| Cow position: | chr23:14960461-14960223 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 132, 84 |
| Conread position: | 224-460 |
| Cow position: | chr23:15179557-15179792 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 137, 83 |
| Conread position: | 224-460 |
| Cow position: | chr23:15216346-15216109 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 131, 81 |
| Conread position: | 224-460 |
| Cow position: | chr23:19492047-19492284 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 132, 84 |
| Conread position: | 224-460 |
| Cow position: | chr23:29442608-29442371 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 133, 89 |
| Conread position: | 224-460 |
| Cow position: | chr23:36028891-36028653 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 46, 62 |
| Conread position: | 224-484 |
| Cow position: | chr23:20540308-20540564 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 132, 76 |
| Conread position: | 224-492 |
| Cow position: | chr23:16612308-16612050 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 132, 52 |
| Conread position: | 226-435 |
| Cow position: | chr23:28221198-28221406 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 137, 82 |
| Conread position: | 226-437 |
| Cow position: | chr23:20178080-20177876 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 139, 45 |
| Conread position: | 233-441 |
| Cow position: | chr23:2368318-2368529 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 32, 76 |
| Conread position: | 233-441 |
| Cow position: | chr23:11781294-11781492 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 234-441 |
| Cow position: | chr23:11027907-11028112 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 129, 37 |
| Conread position: | 234-487 |
| Cow position: | chr23:2792265-2792013 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 122, 74 |
| Conread position: | 236-441 |
| Cow position: | chr23:14971446-14971239 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 123, 72 |
| Conread position: | 256-436 |
| Cow position: | chr23:26317837-26318005 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 105, 52 |
| Conread position: | 277-460 |
| Cow position: | chr23:15659015-15658832 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 79, 31 |
| Conread position: | 294-462 |
| Cow position: | chr23:19451917-19452087 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 27, 14 |
| Conread position: | 308-441 |
| Cow position: | chr23:11343072-11343208 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 103 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 313-441 |
| Cow position: | chr23:7359053-7359184 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 44, 0 |
Show alignments to all cow chromosomes.