Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8022B12.3 |
| Conread position: | 217-381 |
| Cow position: | chr29:19733707-19733875 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 19, 89 |
| Conread position: | 217-435 |
| Cow position: | chr29:5785310-5785530 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 140, 91 |
| Conread position: | 217-438 |
| Cow position: | chr29:39555120-39554898 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 131, 88 |
| Conread position: | 217-441 |
| Cow position: | chr29:132019-132242 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 143, 47 |
| Conread position: | 217-441 |
| Cow position: | chr29:4518397-4518620 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 88 |
| Conread position: | 217-441 |
| Cow position: | chr29:13584715-13584939 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 140, 55 |
| Conread position: | 217-441 |
| Cow position: | chr29:14500363-14500589 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 140, 88 |
| Conread position: | 217-441 |
| Cow position: | chr29:21430356-21430134 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 140, 54 |
| Conread position: | 217-441 |
| Cow position: | chr29:32961816-32962038 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 140, 58 |
| Conread position: | 217-441 |
| Cow position: | chr29:43518687-43518460 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 139, 92 |
| Conread position: | 217-460 |
| Cow position: | chr29:408761-408520 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 139, 51 |
| Conread position: | 217-460 |
| Cow position: | chr29:20253664-20253912 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 53, 16 |
| Conread position: | 217-460 |
| Cow position: | chr29:29702876-29702631 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 139, 88 |
| Conread position: | 217-472 |
| Cow position: | chr29:107555-107807 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 138, 59 |
| Conread position: | 217-472 |
| Cow position: | chr29:23979208-23979463 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 142, 91 |
| Conread position: | 219-460 |
| Cow position: | chr29:32542636-32542878 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 128, 90 |
| Conread position: | 221-441 |
| Cow position: | chr29:4863847-4864064 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 201, 92 |
| Conread position: | 221-460 |
| Cow position: | chr29:18523923-18523687 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 136, 68 |
| Conread position: | 224-433 |
| Cow position: | chr29:10821412-10821201 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 123, 81 |
| Conread position: | 224-435 |
| Cow position: | chr29:666903-666690 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 139, 84 |
| Conread position: | 224-435 |
| Cow position: | chr29:7846899-7847108 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 133, 47 |
| Conread position: | 224-438 |
| Cow position: | chr29:2692954-2693166 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 132, 47 |
| Conread position: | 224-438 |
| Cow position: | chr29:7428607-7428395 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 132, 83 |
| Conread position: | 224-438 |
| Cow position: | chr29:19955100-19955311 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 136, 31 |
| Conread position: | 224-438 |
| Cow position: | chr29:32805022-32805233 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 133, 47 |
| Conread position: | 224-441 |
| Cow position: | chr29:253423-253630 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 132, 12 |
| Conread position: | 224-441 |
| Cow position: | chr29:529894-529676 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 135, 83 |
| Conread position: | 224-441 |
| Cow position: | chr29:1477956-1478175 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 133, 84 |
| Conread position: | 224-441 |
| Cow position: | chr29:5239897-5240115 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 131, 72 |
| Conread position: | 224-441 |
| Cow position: | chr29:5980215-5980004 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 133, 51 |
| Conread position: | 224-441 |
| Cow position: | chr29:15967049-15966830 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 133, 84 |
| Conread position: | 224-441 |
| Cow position: | chr29:19525785-19525566 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 133, 84 |
| Conread position: | 224-441 |
| Cow position: | chr29:26162332-26162113 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 132, 84 |
| Conread position: | 224-441 |
| Cow position: | chr29:28657865-28657647 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 133, 83 |
| Conread position: | 224-441 |
| Cow position: | chr29:35299424-35299643 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 133, 84 |
| Conread position: | 224-441 |
| Cow position: | chr29:40293840-40294055 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 133, 47 |
| Conread position: | 224-460 |
| Cow position: | chr29:2102350-2102589 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 46, 62 |
| Conread position: | 224-460 |
| Cow position: | chr29:2464366-2464129 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 46, 61 |
| Conread position: | 224-460 |
| Cow position: | chr29:2838832-2838594 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 123, 81 |
| Conread position: | 224-460 |
| Cow position: | chr29:6933996-6934233 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 131, 81 |
| Conread position: | 224-460 |
| Cow position: | chr29:10644907-10644669 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 123, 81 |
| Conread position: | 224-460 |
| Cow position: | chr29:13019192-13019427 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 132, 74 |
| Conread position: | 224-460 |
| Cow position: | chr29:14209044-14208807 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 57, 64 |
| Conread position: | 224-460 |
| Cow position: | chr29:15624194-15623960 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 140, 84 |
| Conread position: | 224-460 |
| Cow position: | chr29:16346710-16346948 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 135, 84 |
| Conread position: | 224-460 |
| Cow position: | chr29:19620762-19620526 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 132, 46 |
| Conread position: | 224-460 |
| Cow position: | chr29:19656408-19656642 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 123, 84 |
| Conread position: | 224-460 |
| Cow position: | chr29:25930012-25929777 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 137, 70 |
| Conread position: | 224-460 |
| Cow position: | chr29:39077210-39076974 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 132, 46 |
| Conread position: | 224-460 |
| Cow position: | chr29:40500484-40500246 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 132, 84 |
| Conread position: | 224-460 |
| Cow position: | chr29:43326004-43326242 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 132, 84 |
| Conread position: | 224-460 |
| Cow position: | chr29:45207016-45207253 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 134, 84 |
| Conread position: | 224-460 |
| Cow position: | chr29:45461737-45461975 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 130, 84 |
| Conread position: | 224-461 |
| Cow position: | chr29:35274515-35274280 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 135, 84 |
| Conread position: | 225-434 |
| Cow position: | chr29:16784525-16784736 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 132, 83 |
| Conread position: | 225-454 |
| Cow position: | chr29:43255901-43255670 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 132, 80 |
| Conread position: | 225-460 |
| Cow position: | chr29:45954-45718 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 131, 24 |
| Conread position: | 226-381 |
| Cow position: | chr29:36208287-36208443 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 114, 52 |
| Conread position: | 226-441 |
| Cow position: | chr29:10249170-10248956 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 38, 51 |
| Conread position: | 226-452 |
| Cow position: | chr29:16689339-16689565 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 137, 20 |
| Conread position: | 226-460 |
| Cow position: | chr29:8624686-8624454 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 133, 42 |
| Conread position: | 226-539 |
| Cow position: | chr29:34795353-34795039 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 39, 83 |
| Conread position: | 232-420 |
| Cow position: | chr29:34333762-34333570 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 35, 66 |
| Conread position: | 232-441 |
| Cow position: | chr29:13057264-13057475 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 125, 73 |
| Conread position: | 232-441 |
| Cow position: | chr29:29590377-29590167 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 124, 57 |
| Conread position: | 232-458 |
| Cow position: | chr29:20465807-20466034 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 125, 76 |
| Conread position: | 234-437 |
| Cow position: | chr29:15945016-15944809 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 79, 53 |
| Conread position: | 244-453 |
| Cow position: | chr29:9972860-9972659 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 151 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 36, 44 |
| Conread position: | 297-492 |
| Cow position: | chr29:34331971-34331778 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 63, 11 |
| Conread position: | 317-462 |
| Cow position: | chr29:17152860-17153004 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 40, 13 |
| Conread position: | 325-441 |
| Cow position: | chr29:10238039-10237920 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 39, 0 |
Show alignments to all cow chromosomes.