Cow genome map

Conread name: Ss1.1-Pig3-SRG8022B12.3

Conread position: 199-441
Cow position: chr5:8177403-8177651 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 172
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 17, 110

Conread position: 216-435
Cow position: chr5:21786378-21786158 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 159
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 48, 62

Conread position: 216-441
Cow position: chr5:34299188-34299414 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 174
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 54, 105

Conread position: 217-420
Cow position: chr5:38737120-38737319 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 152
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 139, 72

Conread position: 217-434
Cow position: chr5:43989389-43989627 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 170
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 53, 0

Conread position: 217-435
Cow position: chr5:46778838-46779054 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 154
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 140, 54

Conread position: 217-437
Cow position: chr5:4349683-4349458 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 157
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 140, 88

Conread position: 217-437
Cow position: chr5:21221453-21221238 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 151
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 144, 58

Conread position: 217-437
Cow position: chr5:59278462-59278682 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 162
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 140, 96

Conread position: 217-438
Cow position: chr5:7583685-7583468 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 158
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 140, 49

Conread position: 217-438
Cow position: chr5:42043224-42043439 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 163
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 140, 66

Conread position: 217-438
Cow position: chr5:46792168-46792391 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 152
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 140, 91

Conread position: 217-438
Cow position: chr5:64010537-64010315 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 157
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 34, 67

Conread position: 217-441
Cow position: chr5:7810209-7809986 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 164
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 68, 49

Conread position: 217-441
Cow position: chr5:12502847-12502628 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 163
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 74, 36

Conread position: 217-441
Cow position: chr5:18399170-18398946 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 167
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 143, 70

Conread position: 217-441
Cow position: chr5:18884264-18884039 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 157
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 140, 91

Conread position: 217-441
Cow position: chr5:27172978-27173199 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 162
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 140, 53

Conread position: 217-441
Cow position: chr5:32955348-32955123 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 154
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 142, 47

Conread position: 217-461
Cow position: chr5:40347966-40347718 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 170
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 31, 93

Conread position: 217-468
Cow position: chr5:6189224-6189478 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 175
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 55, 60

Conread position: 217-605
Cow position: chr5:54621946-54622331 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 251
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 53, 70

Conread position: 219-460
Cow position: chr5:10921162-10921403 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 165
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 136, 82

Conread position: 220-441
Cow position: chr5:17025989-17026223 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 167
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 82, 0

Conread position: 220-460
Cow position: chr5:23353065-23353307 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 168
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 137, 85

Conread position: 221-441
Cow position: chr5:14632076-14631856 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 31

Conread position: 223-441
Cow position: chr5:12920721-12920941 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 154
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 133, 85

Conread position: 223-460
Cow position: chr5:443987-443749 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 163
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 134, 25

Conread position: 223-460
Cow position: chr5:18249383-18249620 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 171
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 133, 61

Conread position: 223-460
Cow position: chr5:48806127-48805888 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 166
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 47, 62

Conread position: 224-399
Cow position: chr5:35988682-35988505 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 125
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 133, 81

Conread position: 224-420
Cow position: chr5:28222902-28222704 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 135
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 136, 81

Conread position: 224-432
Cow position: chr5:37734697-37734907 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 155
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 132, 84

Conread position: 224-435
Cow position: chr5:4435177-4434968 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 144
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 84, 0

Conread position: 224-435
Cow position: chr5:5105548-5105761 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 149
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 133, 84

Conread position: 224-435
Cow position: chr5:29633752-29633965 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 147
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 133, 89

Conread position: 224-435
Cow position: chr5:38661657-38661868 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 146
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 133, 84

Conread position: 224-435
Cow position: chr5:59145698-59145911 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 147
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 133, 84

Conread position: 224-436
Cow position: chr5:28948415-28948205 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 166
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 132, 14

Conread position: 224-438
Cow position: chr5:62376221-62376420 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 170
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 136, 81

Conread position: 224-441
Cow position: chr5:4016557-4016339 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 153
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 133, 40

Conread position: 224-441
Cow position: chr5:7276157-7276376 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 157
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 57, 72

Conread position: 224-441
Cow position: chr5:10513950-10513731 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 153
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 139, 84

Conread position: 224-441
Cow position: chr5:18120149-18119936 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 154
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 84, 0

Conread position: 224-441
Cow position: chr5:18275316-18275533 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 150
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 135, 75

Conread position: 224-441
Cow position: chr5:18703985-18704201 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 154
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 133, 81

Conread position: 224-441
Cow position: chr5:24100974-24101193 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 157
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 132, 84

Conread position: 224-441
Cow position: chr5:25232825-25232600 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 94

Conread position: 224-441
Cow position: chr5:25929363-25929147 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 155
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 135, 81

Conread position: 224-441
Cow position: chr5:26076876-26076657 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 152
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 133, 84

Conread position: 224-441
Cow position: chr5:27196756-27196537 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 152
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 140, 84

Conread position: 224-441
Cow position: chr5:30156682-30156901 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 152
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 133, 89

Conread position: 224-441
Cow position: chr5:30581662-30581880 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 152
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 123, 81

Conread position: 224-441
Cow position: chr5:32756116-32755901 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 154
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 132, 59

Conread position: 224-441
Cow position: chr5:32775136-32775355 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 152
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 139, 84

Conread position: 224-441
Cow position: chr5:44710056-44709837 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 159
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 128, 81

Conread position: 224-441
Cow position: chr5:49222171-49221950 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 155
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 130, 40

Conread position: 224-441
Cow position: chr5:50688136-50688355 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 153
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 133, 89

Conread position: 224-441
Cow position: chr5:51166983-51166764 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 156
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 133, 84

Conread position: 224-441
Cow position: chr5:51745551-51745765 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 151
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 133, 37

Conread position: 224-441
Cow position: chr5:71621976-71621757 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 154
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 133, 84

Conread position: 224-441
Cow position: chr5:73486597-73486380 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 149
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 131, 81

Conread position: 224-451
Cow position: chr5:10854492-10854261 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 162
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 133, 89

Conread position: 224-452
Cow position: chr5:45180769-45180537 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 160
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 139, 84

Conread position: 224-460
Cow position: chr5:3501800-3501566 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 165
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 132, 47

Conread position: 224-460
Cow position: chr5:29743229-29742995 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 161
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 123, 47

Conread position: 224-460
Cow position: chr5:31098936-31098692 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 165
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 111, 81

Conread position: 224-460
Cow position: chr5:46735956-46735718 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 164
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 132, 84

Conread position: 224-460
Cow position: chr5:47342047-47342275 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 167
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 132, 46

Conread position: 224-460
Cow position: chr5:48226253-48226012 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 172
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 46, 87

Conread position: 224-466
Cow position: chr5:25902145-25901902 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 177
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 133, 81

Conread position: 224-484
Cow position: chr5:4602837-4603096 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 182
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 58, 51

Conread position: 224-531
Cow position: chr5:3788551-3788859 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 212
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 131, 84

Conread position: 224-539
Cow position: chr5:49521044-49521354 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 212
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 131, 30

Conread position: 224-590
Cow position: chr5:64779680-64779317 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 244
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 132, 89

Conread position: 225-441
Cow position: chr5:32365094-32365309 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 157
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 132, 83

Conread position: 226-433
Cow position: chr5:9003785-9003576 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 148
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 131, 82

Conread position: 226-435
Cow position: chr5:5925635-5925424 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 145
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 131, 82

Conread position: 226-435
Cow position: chr5:49071468-49071262 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 152
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 130, 15

Conread position: 226-441
Cow position: chr5:9092093-9091876 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 157
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 130, 59

Conread position: 226-441
Cow position: chr5:54786782-54786564 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 153
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 130, 79

Conread position: 226-444
Cow position: chr5:29673579-29673794 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 155
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 46, 18

Conread position: 232-441
Cow position: chr5:55833512-55833305 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 148
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 122, 43

Conread position: 233-441
Cow position: chr5:56785882-56786092 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 145
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 124, 80

Conread position: 233-460
Cow position: chr5:18559070-18558841 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 162
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 123, 75

Conread position: 234-441
Cow position: chr5:59770382-59770591 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 154
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 125, 38

Conread position: 234-452
Cow position: chr5:57337076-57336858 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 153
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 123, 32

Conread position: 238-411
Cow position: chr5:3694445-3694270 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 131
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 90, 63

Conread position: 239-438
Cow position: chr5:68585240-68585443 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 146
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 82, 69

Conread position: 241-441
Cow position: chr5:40932796-40932989 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 145
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 116, 83

Conread position: 242-435
Cow position: chr5:52823865-52823670 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 136
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 115, 66

Conread position: 244-441
Cow position: chr5:37610598-37610399 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 139
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 120, 64

Conread position: 247-441
Cow position: chr5:2916812-2917008 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 137
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 109, 61

Conread position: 248-441
Cow position: chr5:51819632-51819437 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 135
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 109, 65

Conread position: 250-435
Cow position: chr5:10773753-10773567 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 130
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 107, 58

Conread position: 259-441
Cow position: chr5:31916013-31916191 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 138
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 15, 28

Conread position: 272-441
Cow position: chr5:15361536-15361706 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 135
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 8, 28

Conread position: 276-438
Cow position: chr5:30844171-30844331 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 127
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 88, 15

Conread position: 292-432
Cow position: chr5:40791243-40791384 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 122
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 64, 16

Conread position: 308-441
Cow position: chr5:28571002-28571137 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 108
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 53, 0

Show alignments to all cow chromosomes.