Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8022E11.3 |
| Conread position: | 118-758 |
| Cow position: | chr10:3317787-3318444 (view UCSC Genome Browser custom track) |
| Alignm length: | 673 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 44 |
| Conread position: | 155-354 |
| Cow position: | chr10:55287722-55287925 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 5, 82 |
| Conread position: | 156-379 |
| Cow position: | chr10:51779070-51778849 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 102, 50 |
| Conread position: | 157-765 |
| Cow position: | chr10:22860192-22859599 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 19 |
| Conread position: | 158-365 |
| Cow position: | chr10:24077678-24077473 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 89, 77 |
| Conread position: | 158-402 |
| Cow position: | chr10:31219960-31220208 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 183 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 13, 73 |
| Conread position: | 158-417 |
| Cow position: | chr10:15618808-15618543 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 78 |
| Conread position: | 158-418 |
| Cow position: | chr10:12875847-12875592 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 194 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 54, 79 |
| Conread position: | 158-510 |
| Cow position: | chr10:28566284-28565917 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 76 |
| Conread position: | 158-602 |
| Cow position: | chr10:36303885-36303404 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 335 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 60, 100 |
| Conread position: | 158-694 |
| Cow position: | chr10:48193716-48193195 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 72 |
| Conread position: | 158-754 |
| Cow position: | chr10:16669402-16668783 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 55 |
| Conread position: | 158-765 |
| Cow position: | chr10:11275614-11276236 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 78 |
| Conread position: | 158-769 |
| Cow position: | chr10:22455159-22455761 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 43 |
| Conread position: | 159-418 |
| Cow position: | chr10:41637614-41637871 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 53, 74 |
| Conread position: | 159-766 |
| Cow position: | chr10:68204130-68203518 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 95 |
| Conread position: | 161-359 |
| Cow position: | chr10:22843653-22843853 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 51, 75 |
| Conread position: | 163-378 |
| Cow position: | chr10:48313104-48312888 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 48, 116 |
| Conread position: | 166-766 |
| Cow position: | chr10:43061139-43060524 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 9 |
| Conread position: | 167-433 |
| Cow position: | chr10:4994592-4994318 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 43, 69 |
| Conread position: | 173-467 |
| Cow position: | chr10:45650653-45650934 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 207 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 37, 50 |
| Conread position: | 177-528 |
| Cow position: | chr10:1351915-1352279 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 59 |
| Conread position: | 180-767 |
| Cow position: | chr10:37428690-37428113 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 10 |
| Conread position: | 183-766 |
| Cow position: | chr10:767788-767220 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 106 |
| Conread position: | 253-680 |
| Cow position: | chr10:38472257-38472683 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 249 |
| Conread position: | 266-595 |
| Cow position: | chr10:25257703-25258012 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 75, 15 |
| Conread position: | 276-558 |
| Cow position: | chr10:48208707-48208426 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 43, 108 |
| Conread position: | 283-767 |
| Cow position: | chr10:23880070-23879586 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 73 |
| Conread position: | 287-682 |
| Cow position: | chr10:68979639-68980015 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 283 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 116, 74 |
| Conread position: | 293-533 |
| Cow position: | chr10:60243062-60243311 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 296-766 |
| Cow position: | chr10:12199107-12199590 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 96 |
| Conread position: | 316-767 |
| Cow position: | chr10:53375156-53374733 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 13 |
| Conread position: | 324-640 |
| Cow position: | chr10:27222896-27223220 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 221 |
| Conread position: | 340-766 |
| Cow position: | chr10:47583845-47584257 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 289 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 17, 39 |
| Conread position: | 376-699 |
| Cow position: | chr10:17415706-17415386 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 30, 95 |
| Conread position: | 379-772 |
| Cow position: | chr10:50141336-50140942 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 273 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 19, 7 |
| Conread position: | 394-756 |
| Cow position: | chr10:18863066-18863431 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 263 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 26, 45 |
| Conread position: | 400-768 |
| Cow position: | chr10:3854952-3855298 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 258 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 190, 21 |
| Conread position: | 418-717 |
| Cow position: | chr10:15824302-15824005 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 236 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 69, 11 |
| Conread position: | 424-757 |
| Cow position: | chr10:1328248-1327935 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 76, 98 |
| Conread position: | 433-766 |
| Cow position: | chr10:19128559-19128221 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 9 |
| Conread position: | 439-774 |
| Cow position: | chr10:17745368-17745685 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 64, 25 |
| Conread position: | 460-633 |
| Cow position: | chr10:9464467-9464638 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 141, 80 |
| Conread position: | 460-749 |
| Cow position: | chr10:15618168-15617893 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 219 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 35, 11 |
| Conread position: | 460-771 |
| Cow position: | chr10:35181960-35182265 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 27 |
| Conread position: | 461-582 |
| Cow position: | chr10:62629288-62629404 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 101 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 466-748 |
| Cow position: | chr10:17513598-17513337 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 204 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 37, 72 |
| Conread position: | 474-766 |
| Cow position: | chr10:24609062-24609359 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 65 |
| Conread position: | 482-766 |
| Cow position: | chr10:52131858-52132136 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 224 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 20, 34 |
| Conread position: | 483-766 |
| Cow position: | chr10:37665296-37665016 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 12 |
| Conread position: | 484-766 |
| Cow position: | chr10:41638081-41638364 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 21, 29 |
| Conread position: | 487-684 |
| Cow position: | chr10:37092793-37092594 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 105, 47 |
| Conread position: | 496-687 |
| Cow position: | chr10:23589831-23589643 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 42, 15 |
| Conread position: | 496-766 |
| Cow position: | chr10:67051197-67051459 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 203 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 117, 19 |
| Conread position: | 497-766 |
| Cow position: | chr10:57404366-57404115 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 99, 39 |
| Conread position: | 500-774 |
| Cow position: | chr10:5422073-5421797 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 37 |
| Conread position: | 505-754 |
| Cow position: | chr10:63621558-63621313 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 196 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 87, 39 |
| Conread position: | 525-714 |
| Cow position: | chr10:28565801-28565616 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 534-753 |
| Cow position: | chr10:60243956-60244174 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 32 |
| Conread position: | 536-725 |
| Cow position: | chr10:54342966-54342770 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 56, 46 |
| Conread position: | 536-739 |
| Cow position: | chr10:31220502-31220708 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 56, 26 |
| Conread position: | 536-756 |
| Cow position: | chr10:21477314-21477538 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 80, 56 |
| Conread position: | 536-769 |
| Cow position: | chr10:45195707-45195940 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 79, 8 |
| Conread position: | 538-754 |
| Cow position: | chr10:21563327-21563560 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 54, 215 |
| Conread position: | 547-725 |
| Cow position: | chr10:4994081-4993900 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 46, 157 |
| Conread position: | 547-766 |
| Cow position: | chr10:48208302-48208087 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 559-730 |
| Cow position: | chr10:49280156-49279976 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 569-755 |
| Cow position: | chr10:4013657-4013841 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 23, 145 |
| Conread position: | 569-755 |
| Cow position: | chr10:62629705-62629889 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 42, 22 |
| Conread position: | 573-766 |
| Cow position: | chr10:25536403-25536606 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 19, 171 |
| Conread position: | 583-766 |
| Cow position: | chr10:25008818-25008635 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 33, 8 |
| Conread position: | 583-766 |
| Cow position: | chr10:30320800-30320982 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 9, 59 |
| Conread position: | 601-766 |
| Cow position: | chr10:33995588-33995424 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 74, 7 |
| Conread position: | 604-758 |
| Cow position: | chr10:30708728-30708576 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 87, 127 |
| Conread position: | 610-766 |
| Cow position: | chr10:55874162-55874314 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 150, 48 |
| Conread position: | 610-769 |
| Cow position: | chr10:4605533-4605376 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 119, 29 |
| Conread position: | 610-769 |
| Cow position: | chr10:55437604-55437453 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 32, 100 |
| Conread position: | 621-755 |
| Cow position: | chr10:30358051-30357918 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 631-766 |
| Cow position: | chr10:46010276-46010142 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 648-766 |
| Cow position: | chr10:45651179-45651296 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 659-757 |
| Cow position: | chr10:27224191-27224288 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 88 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 74, 0 |
Show alignments to all cow chromosomes.