Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8022E11.3 |
| Conread position: | 157-411 |
| Cow position: | chr12:32221614-32221870 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 54, 79 |
| Conread position: | 157-734 |
| Cow position: | chr12:27423209-27423786 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 56 |
| Conread position: | 158-379 |
| Cow position: | chr12:37510690-37510472 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 158-381 |
| Cow position: | chr12:11306639-11306424 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 53, 89 |
| Conread position: | 158-510 |
| Cow position: | chr12:29760690-29760337 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 78 |
| Conread position: | 158-590 |
| Cow position: | chr12:21066149-21066579 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 19 |
| Conread position: | 158-764 |
| Cow position: | chr12:1993631-1993001 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 54 |
| Conread position: | 158-766 |
| Cow position: | chr12:10162013-10161388 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 482 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 78 |
| Conread position: | 158-766 |
| Cow position: | chr12:16961554-16962158 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 242, 74 |
| Conread position: | 158-769 |
| Cow position: | chr12:33277861-33278462 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 59 |
| Conread position: | 159-390 |
| Cow position: | chr12:22473919-22474148 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 53, 77 |
| Conread position: | 159-491 |
| Cow position: | chr12:23498093-23498422 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 237 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 227, 13 |
| Conread position: | 159-557 |
| Cow position: | chr12:23892480-23892873 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 58 |
| Conread position: | 159-757 |
| Cow position: | chr12:26311135-26310555 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 66 |
| Conread position: | 161-392 |
| Cow position: | chr12:12982921-12982680 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 50, 97 |
| Conread position: | 209-495 |
| Cow position: | chr12:25513883-25514169 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 43, 23 |
| Conread position: | 217-766 |
| Cow position: | chr12:2838237-2837702 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 16 |
| Conread position: | 289-766 |
| Cow position: | chr12:8468105-8467634 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 52 |
| Conread position: | 291-726 |
| Cow position: | chr12:36975350-36974909 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 260 |
| Conread position: | 307-716 |
| Cow position: | chr12:7025355-7024934 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 76 |
| Conread position: | 323-735 |
| Cow position: | chr12:18442786-18443185 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 32 |
| Conread position: | 388-766 |
| Cow position: | chr12:33277433-33277059 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 77 |
| Conread position: | 392-767 |
| Cow position: | chr12:8767450-8767068 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 150 |
| Conread position: | 401-762 |
| Cow position: | chr12:28214288-28214647 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 52 |
| Conread position: | 422-764 |
| Cow position: | chr12:11306422-11306081 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 16 |
| Conread position: | 431-769 |
| Cow position: | chr12:20227155-20226819 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 90 |
| Conread position: | 439-757 |
| Cow position: | chr12:7936838-7936533 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 44 |
| Conread position: | 460-732 |
| Cow position: | chr12:7086360-7086626 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 74 |
| Conread position: | 461-758 |
| Cow position: | chr12:38223295-38222989 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 225 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 37, 75 |
| Conread position: | 461-766 |
| Cow position: | chr12:5896818-5896509 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 26 |
| Conread position: | 473-751 |
| Cow position: | chr12:27718093-27718359 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 29, 60 |
| Conread position: | 496-756 |
| Cow position: | chr12:23499105-23499365 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 8, 43 |
| Conread position: | 499-702 |
| Cow position: | chr12:12763917-12763715 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 117, 45 |
| Conread position: | 506-766 |
| Cow position: | chr12:33350640-33350892 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 197 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 86, 31 |
| Conread position: | 517-766 |
| Cow position: | chr12:34475914-34476154 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 189 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 87, 20 |
| Conread position: | 520-766 |
| Cow position: | chr12:29759180-29758928 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 220 |
| Conread position: | 530-757 |
| Cow position: | chr12:14236329-14236540 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 62, 17 |
| Conread position: | 536-766 |
| Cow position: | chr12:11187561-11187788 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 98, 72 |
| Conread position: | 546-768 |
| Cow position: | chr12:29801522-29801752 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 46, 196 |
| Conread position: | 555-766 |
| Cow position: | chr12:42854113-42854323 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 171 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 16, 111 |
| Conread position: | 562-765 |
| Cow position: | chr12:12709832-12709634 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 571-765 |
| Cow position: | chr12:27111234-27111429 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 21, 12 |
| Conread position: | 610-752 |
| Cow position: | chr12:25514503-25514644 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 610-766 |
| Cow position: | chr12:15147449-15147610 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 11, 129 |
| Conread position: | 610-769 |
| Cow position: | chr12:21066620-21066770 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 615-766 |
| Cow position: | chr12:39710033-39710183 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 118, 0 |
Show alignments to all cow chromosomes.