Cow genome map

Conread name: Ss1.1-Pig3-SRG8022E11.3

Conread position: 157-699
Cow position: chr13:34931292-34931790 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 40

Conread position: 158-305
Cow position: chr13:25956518-25956371 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 116
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 61, 78

Conread position: 158-379
Cow position: chr13:46637128-46637341 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 155
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 143, 54

Conread position: 158-381
Cow position: chr13:22277181-22277405 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 163
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 51, 152

Conread position: 158-381
Cow position: chr13:43384628-43384856 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 175
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 48, 82

Conread position: 158-454
Cow position: chr13:38362280-38361978 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 78

Conread position: 158-564
Cow position: chr13:37497731-37498127 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 78

Conread position: 158-754
Cow position: chr13:38535384-38534808 (view UCSC Genome Browser custom track)
Alignm length: 613
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 76

Conread position: 158-766
Cow position: chr13:12325106-12325691 (view UCSC Genome Browser custom track)
Alignm length: 617
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 78

Conread position: 158-766
Cow position: chr13:34265087-34264502 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 70

Conread position: 158-768
Cow position: chr13:45497259-45497870 (view UCSC Genome Browser custom track)
Alignm length: 634
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 30

Conread position: 159-416
Cow position: chr13:1368018-1367755 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 186
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 55, 230

Conread position: 159-767
Cow position: chr13:55406662-55407271 (view UCSC Genome Browser custom track)
Alignm length: 630
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 77

Conread position: 163-390
Cow position: chr13:46349510-46349737 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 173
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 49, 58

Conread position: 163-640
Cow position: chr13:39487335-39487813 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 61

Conread position: 173-353
Cow position: chr13:24373402-24373223 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 129
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 37, 63

Conread position: 177-402
Cow position: chr13:25716100-25715889 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 160
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 58, 0

Conread position: 209-766
Cow position: chr13:19115474-19116010 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 13

Conread position: 212-764
Cow position: chr13:34885019-34885585 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 26

Conread position: 253-660
Cow position: chr13:24675762-24676165 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 244, 130

Conread position: 253-721
Cow position: chr13:46464724-46464259 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 8

Conread position: 255-684
Cow position: chr13:34336360-34336767 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 58

Conread position: 275-484
Cow position: chr13:11441467-11441676 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 148
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 144, 108

Conread position: 281-542
Cow position: chr13:62272006-62271745 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 188
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 125, 148

Conread position: 291-494
Cow position: chr13:59997899-59997688 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 153
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 90, 110

Conread position: 291-520
Cow position: chr13:9103773-9103547 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 160
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 68, 93

Conread position: 291-714
Cow position: chr13:47325773-47325344 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 159

Conread position: 291-726
Cow position: chr13:51240859-51241294 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 92

Conread position: 301-751
Cow position: chr13:25955478-25955031 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 54

Conread position: 303-504
Cow position: chr13:30833978-30834172 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 147
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 134, 83

Conread position: 308-714
Cow position: chr13:17169346-17169745 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 284, 121

Conread position: 319-767
Cow position: chr13:44144256-44143801 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 157

Conread position: 333-529
Cow position: chr13:15489590-15489790 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 155
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 48, 166

Conread position: 345-757
Cow position: chr13:24404186-24403776 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 45

Conread position: 351-667
Cow position: chr13:21878498-21878170 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 245
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 40, 145

Conread position: 353-560
Cow position: chr13:18839113-18839323 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 155
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 65, 114

Conread position: 366-621
Cow position: chr13:26943003-26943262 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 199
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 54, 24

Conread position: 369-758
Cow position: chr13:17596984-17597362 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 278
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 51, 15

Conread position: 377-750
Cow position: chr13:11570765-11570413 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 256
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 56, 21

Conread position: 378-585
Cow position: chr13:4519125-4518922 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 150
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 50, 161

Conread position: 378-668
Cow position: chr13:21826376-21826645 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 198
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 13, 52

Conread position: 378-766
Cow position: chr13:15731353-15730965 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 270
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 42, 100

Conread position: 386-674
Cow position: chr13:20656548-20656853 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 222
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 34, 52

Conread position: 387-758
Cow position: chr13:19015248-19014870 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 269
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 33, 61

Conread position: 387-761
Cow position: chr13:33239735-33240117 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 136

Conread position: 388-754
Cow position: chr13:4947478-4947111 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 241
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 38, 212

Conread position: 389-769
Cow position: chr13:43803146-43803531 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 268
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 38, 148

Conread position: 398-732
Cow position: chr13:51142777-51142447 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 145

Conread position: 417-732
Cow position: chr13:28605673-28605990 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 22

Conread position: 418-765
Cow position: chr13:11223160-11222830 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 254
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 86, 13

Conread position: 419-766
Cow position: chr13:14080188-14079844 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 86

Conread position: 422-757
Cow position: chr13:43385066-43385388 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 25

Conread position: 435-765
Cow position: chr13:12213755-12214085 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 48

Conread position: 438-734
Cow position: chr13:5619403-5619104 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 212
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 61, 9

Conread position: 439-767
Cow position: chr13:26034598-26034295 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 239
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 295, 50

Conread position: 444-629
Cow position: chr13:47279996-47279809 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 143
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 55, 77

Conread position: 459-726
Cow position: chr13:12658014-12658269 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 196
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 44, 28

Conread position: 460-771
Cow position: chr13:4796125-4796438 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 77

Conread position: 464-757
Cow position: chr13:698693-698970 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 220
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 39, 66

Conread position: 473-766
Cow position: chr13:10854701-10854414 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 232
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 30, 19

Conread position: 483-766
Cow position: chr13:59997476-59997188 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 213
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 20, 51

Conread position: 487-766
Cow position: chr13:18597036-18596775 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 224
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 16, 51

Conread position: 488-755
Cow position: chr13:22984781-22985054 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 198
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 104, 49

Conread position: 488-764
Cow position: chr13:57611549-57611826 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 204
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 14, 50

Conread position: 495-766
Cow position: chr13:2416382-2416651 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 210
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 9, 37

Conread position: 497-766
Cow position: chr13:48580649-48580386 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 0

Conread position: 500-766
Cow position: chr13:22193753-22194013 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 23

Conread position: 502-766
Cow position: chr13:38361953-38361690 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 203
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 90, 40

Conread position: 525-730
Cow position: chr13:57246105-57246310 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 149
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 66, 155

Conread position: 535-755
Cow position: chr13:6921224-6921002 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 170
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 64, 31

Conread position: 536-696
Cow position: chr13:9103244-9103082 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 132
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 56, 0

Conread position: 538-758
Cow position: chr13:25877493-25877703 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 168
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 27, 17

Conread position: 540-758
Cow position: chr13:18839444-18839663 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 171
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 66, 139

Conread position: 545-766
Cow position: chr13:14708748-14708976 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 178
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 47, 25

Conread position: 546-765
Cow position: chr13:18541341-18541557 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 153
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 61, 114

Conread position: 547-767
Cow position: chr13:62210366-62210575 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 155
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 134, 18

Conread position: 552-758
Cow position: chr13:4659682-4659472 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 164
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 40, 165

Conread position: 571-770
Cow position: chr13:15489927-15490133 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 161
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 21, 169

Conread position: 572-766
Cow position: chr13:30951063-30950859 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 153
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 20, 173

Conread position: 574-769
Cow position: chr13:48080178-48080379 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 148
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 15, 173

Conread position: 590-766
Cow position: chr13:27795826-27796003 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 139
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 22, 147

Conread position: 609-766
Cow position: chr13:51177602-51177759 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 125
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 151, 123

Conread position: 610-766
Cow position: chr13:20876638-20876481 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 125
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 98, 124

Conread position: 610-766
Cow position: chr13:57746299-57746457 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 129
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 71, 125

Conread position: 642-766
Cow position: chr13:20496477-20496353 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 101
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 118, 90

Show alignments to all cow chromosomes.