Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8022E11.3 |
| Conread position: | 155-379 |
| Cow position: | chr14:9255246-9255474 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 6, 87 |
| Conread position: | 157-641 |
| Cow position: | chr14:45018443-45018906 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 79 |
| Conread position: | 157-766 |
| Cow position: | chr14:35605258-35605869 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 64 |
| Conread position: | 157-767 |
| Cow position: | chr14:37983349-37983958 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 79 |
| Conread position: | 158-379 |
| Cow position: | chr14:18984844-18985063 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 91, 47 |
| Conread position: | 158-384 |
| Cow position: | chr14:12643705-12643929 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 96, 51 |
| Conread position: | 158-418 |
| Cow position: | chr14:3437045-3436787 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 197 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 15, 72 |
| Conread position: | 158-535 |
| Cow position: | chr14:3588388-3588777 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 51 |
| Conread position: | 158-535 |
| Cow position: | chr14:38000576-38000208 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 78 |
| Conread position: | 158-621 |
| Cow position: | chr14:21863977-21864414 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 79 |
| Conread position: | 158-628 |
| Cow position: | chr14:14835084-14835551 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 77 |
| Conread position: | 158-766 |
| Cow position: | chr14:15011410-15012032 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 78 |
| Conread position: | 158-769 |
| Cow position: | chr14:47880075-47880676 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 78 |
| Conread position: | 159-727 |
| Cow position: | chr14:2298862-2299414 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 77 |
| Conread position: | 159-766 |
| Cow position: | chr14:40244221-40243616 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 473 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 12 |
| Conread position: | 159-766 |
| Cow position: | chr14:44886605-44885994 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 77 |
| Conread position: | 161-766 |
| Cow position: | chr14:31810690-31810117 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 76 |
| Conread position: | 166-681 |
| Cow position: | chr14:27578745-27579250 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 70 |
| Conread position: | 167-766 |
| Cow position: | chr14:41713063-41712477 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 67 |
| Conread position: | 167-767 |
| Cow position: | chr14:28007655-28007061 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 63 |
| Conread position: | 220-390 |
| Cow position: | chr14:38546158-38546327 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 29, 15 |
| Conread position: | 251-641 |
| Cow position: | chr14:24783196-24783590 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 34 |
| Conread position: | 255-636 |
| Cow position: | chr14:45185303-45184927 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 273 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 126, 149 |
| Conread position: | 255-710 |
| Cow position: | chr14:42693603-42693147 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 128 |
| Conread position: | 255-767 |
| Cow position: | chr14:44454411-44453892 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 28 |
| Conread position: | 257-674 |
| Cow position: | chr14:46546032-46546442 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 287 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 135, 116 |
| Conread position: | 264-701 |
| Cow position: | chr14:42258895-42258467 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 19 |
| Conread position: | 277-657 |
| Cow position: | chr14:19339743-19340138 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 236 |
| Conread position: | 277-752 |
| Cow position: | chr14:24193272-24192790 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 66 |
| Conread position: | 285-765 |
| Cow position: | chr14:50650462-50649991 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 71 |
| Conread position: | 286-501 |
| Cow position: | chr14:35682933-35683151 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 134, 24 |
| Conread position: | 291-572 |
| Cow position: | chr14:30020928-30021210 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 61 |
| Conread position: | 339-696 |
| Cow position: | chr14:24739129-24738755 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 161 |
| Conread position: | 340-757 |
| Cow position: | chr14:20642791-20643189 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 188 |
| Conread position: | 366-667 |
| Cow position: | chr14:46980161-46980468 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 233 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 31, 156 |
| Conread position: | 366-763 |
| Cow position: | chr14:10949659-10950055 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 131 |
| Conread position: | 380-765 |
| Cow position: | chr14:19734925-19735316 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 13 |
| Conread position: | 388-766 |
| Cow position: | chr14:34912134-34912502 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 52 |
| Conread position: | 423-766 |
| Cow position: | chr14:16715645-16715301 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 244 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 77, 19 |
| Conread position: | 424-766 |
| Cow position: | chr14:50484597-50484281 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 233 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 75, 25 |
| Conread position: | 447-739 |
| Cow position: | chr14:17556401-17556107 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 91 |
| Conread position: | 460-732 |
| Cow position: | chr14:44483207-44483466 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 39, 79 |
| Conread position: | 460-761 |
| Cow position: | chr14:17051327-17051029 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 218 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 35, 77 |
| Conread position: | 461-757 |
| Cow position: | chr14:30134090-30134390 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 223 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 141, 71 |
| Conread position: | 461-766 |
| Cow position: | chr14:22046592-22046301 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 68 |
| Conread position: | 483-708 |
| Cow position: | chr14:15662492-15662719 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 10, 53 |
| Conread position: | 492-766 |
| Cow position: | chr14:30762377-30762120 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 10, 38 |
| Conread position: | 501-780 |
| Cow position: | chr14:38722574-38722304 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 36 |
| Conread position: | 502-765 |
| Cow position: | chr14:25994315-25994572 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 23 |
| Conread position: | 503-689 |
| Cow position: | chr14:9500206-9500382 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 69, 34 |
| Conread position: | 503-767 |
| Cow position: | chr14:25448081-25447843 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 198 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 505-771 |
| Cow position: | chr14:32903930-32904191 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 209 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 84, 32 |
| Conread position: | 536-766 |
| Cow position: | chr14:36420361-36420590 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 30 |
| Conread position: | 536-777 |
| Cow position: | chr14:38000078-37999843 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 33 |
| Conread position: | 539-766 |
| Cow position: | chr14:3436318-3436104 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 542-758 |
| Cow position: | chr14:35685425-35685642 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 50, 24 |
| Conread position: | 556-766 |
| Cow position: | chr14:3589258-3589461 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 157 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 36, 106 |
| Conread position: | 567-780 |
| Cow position: | chr14:44023918-44023701 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 39, 25 |
| Conread position: | 568-767 |
| Cow position: | chr14:17462946-17462744 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 23, 63 |
| Conread position: | 570-704 |
| Cow position: | chr14:44771727-44771588 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 589-767 |
| Cow position: | chr14:38413111-38412933 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 9, 32 |
| Conread position: | 608-766 |
| Cow position: | chr14:29481213-29481370 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 135 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 608-767 |
| Cow position: | chr14:5255591-5255434 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 14, 0 |
Show alignments to all cow chromosomes.