Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8022E11.3 |
| Conread position: | 155-379 |
| Cow position: | chr15:43275187-43275412 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 6, 76 |
| Conread position: | 157-766 |
| Cow position: | chr15:6523769-6523180 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 44 |
| Conread position: | 157-766 |
| Cow position: | chr15:23265439-23266040 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 52 |
| Conread position: | 158-345 |
| Cow position: | chr15:5912768-5912583 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 52, 63 |
| Conread position: | 158-379 |
| Cow position: | chr15:23172099-23171883 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 53, 36 |
| Conread position: | 158-379 |
| Cow position: | chr15:39288415-39288190 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 60, 78 |
| Conread position: | 158-389 |
| Cow position: | chr15:14811537-14811314 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 52, 71 |
| Conread position: | 158-457 |
| Cow position: | chr15:40065590-40065904 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 78 |
| Conread position: | 158-708 |
| Cow position: | chr15:37470307-37469750 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 71 |
| Conread position: | 158-739 |
| Cow position: | chr15:10581056-10581643 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 78 |
| Conread position: | 158-766 |
| Cow position: | chr15:53712493-53713102 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 76 |
| Conread position: | 158-766 |
| Cow position: | chr15:53728607-53728013 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 76 |
| Conread position: | 158-767 |
| Cow position: | chr15:44797629-44796999 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 21 |
| Conread position: | 159-363 |
| Cow position: | chr15:21802068-21802273 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 54, 77 |
| Conread position: | 159-379 |
| Cow position: | chr15:3832262-3832047 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 50, 68 |
| Conread position: | 159-379 |
| Cow position: | chr15:52204659-52204877 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 76, 46 |
| Conread position: | 159-415 |
| Cow position: | chr15:4623582-4623321 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 193 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 52, 77 |
| Conread position: | 159-596 |
| Cow position: | chr15:37492035-37491610 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 77 |
| Conread position: | 160-585 |
| Cow position: | chr15:9072341-9072779 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 287 |
| Conread position: | 160-766 |
| Cow position: | chr15:25683346-25683963 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 76 |
| Conread position: | 161-381 |
| Cow position: | chr15:1893018-1892804 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 49, 75 |
| Conread position: | 168-765 |
| Cow position: | chr15:52868497-52869082 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 68 |
| Conread position: | 193-499 |
| Cow position: | chr15:31918279-31917983 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 17, 43 |
| Conread position: | 209-765 |
| Cow position: | chr15:17641911-17642459 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 229-640 |
| Cow position: | chr15:27972049-27971638 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 294 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 24, 46 |
| Conread position: | 229-730 |
| Cow position: | chr15:11997461-11997987 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 59 |
| Conread position: | 229-758 |
| Cow position: | chr15:18403663-18404174 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 24 |
| Conread position: | 229-771 |
| Cow position: | chr15:31935265-31935802 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 24 |
| Conread position: | 230-766 |
| Cow position: | chr15:37633080-37633630 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 57 |
| Conread position: | 255-400 |
| Cow position: | chr15:35041837-35041982 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 277-767 |
| Cow position: | chr15:30569931-30570407 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 140 |
| Conread position: | 345-765 |
| Cow position: | chr15:578889-579309 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 199 |
| Conread position: | 348-732 |
| Cow position: | chr15:12048898-12048512 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 199 |
| Conread position: | 380-668 |
| Cow position: | chr15:35042256-35042551 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 24, 115 |
| Conread position: | 380-754 |
| Cow position: | chr15:14811055-14810685 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 266 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 26, 166 |
| Conread position: | 387-769 |
| Cow position: | chr15:31855352-31855739 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 276 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 33, 116 |
| Conread position: | 388-585 |
| Cow position: | chr15:14974229-14974025 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 32, 12 |
| Conread position: | 388-757 |
| Cow position: | chr15:19813610-19813244 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 258 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 111, 59 |
| Conread position: | 396-766 |
| Cow position: | chr15:16669529-16669159 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 119 |
| Conread position: | 397-730 |
| Cow position: | chr15:1887967-1888302 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 140 |
| Conread position: | 400-641 |
| Cow position: | chr15:26365317-26365556 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 103, 117 |
| Conread position: | 402-765 |
| Cow position: | chr15:49271846-49272195 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 48 |
| Conread position: | 418-766 |
| Cow position: | chr15:4622841-4622511 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 253 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 43, 32 |
| Conread position: | 422-679 |
| Cow position: | chr15:34551850-34552110 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 196 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 26, 118 |
| Conread position: | 423-766 |
| Cow position: | chr15:3593519-3593190 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 80, 114 |
| Conread position: | 424-766 |
| Cow position: | chr15:26866779-26867094 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 431-721 |
| Cow position: | chr15:38902521-38902251 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 159, 56 |
| Conread position: | 447-673 |
| Cow position: | chr15:36864611-36864383 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 21, 92 |
| Conread position: | 447-768 |
| Cow position: | chr15:7443961-7443660 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 452-766 |
| Cow position: | chr15:52131792-52132105 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 86 |
| Conread position: | 454-758 |
| Cow position: | chr15:21802504-21802797 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 69 |
| Conread position: | 460-741 |
| Cow position: | chr15:12283132-12283405 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 13 |
| Conread position: | 460-755 |
| Cow position: | chr15:2437075-2437354 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 215 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 43, 51 |
| Conread position: | 460-769 |
| Cow position: | chr15:16972180-16971877 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 81 |
| Conread position: | 460-777 |
| Cow position: | chr15:9437460-9437772 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 80 |
| Conread position: | 462-765 |
| Cow position: | chr15:8630301-8630597 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 76 |
| Conread position: | 465-757 |
| Cow position: | chr15:49279505-49279209 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 39, 73 |
| Conread position: | 482-666 |
| Cow position: | chr15:36582576-36582393 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 21, 55 |
| Conread position: | 488-732 |
| Cow position: | chr15:9428039-9427786 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 15, 49 |
| Conread position: | 497-766 |
| Cow position: | chr15:39809503-39809772 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 34 |
| Conread position: | 501-766 |
| Cow position: | chr15:5912387-5912119 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 36 |
| Conread position: | 502-765 |
| Cow position: | chr15:11287388-11287122 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 45 |
| Conread position: | 503-694 |
| Cow position: | chr15:1892182-1891994 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 81, 30 |
| Conread position: | 519-660 |
| Cow position: | chr15:39360167-39360017 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 18, 51 |
| Conread position: | 536-724 |
| Cow position: | chr15:53335380-53335578 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 536-757 |
| Cow position: | chr15:13081343-13081577 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 179 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 67, 211 |
| Conread position: | 536-757 |
| Cow position: | chr15:28608148-28607914 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 181 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 61, 56 |
| Conread position: | 536-757 |
| Cow position: | chr15:50243324-50243540 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 65, 73 |
| Conread position: | 536-766 |
| Cow position: | chr15:21182026-21182259 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 185 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 54, 115 |
| Conread position: | 536-766 |
| Cow position: | chr15:40065922-40066154 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 56, 31 |
| Conread position: | 570-766 |
| Cow position: | chr15:16989556-16989757 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 30, 122 |
| Conread position: | 589-767 |
| Cow position: | chr15:29337785-29337608 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 167, 35 |
| Conread position: | 608-757 |
| Cow position: | chr15:9075432-9075577 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 19, 85 |
| Conread position: | 608-766 |
| Cow position: | chr15:35067038-35067197 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 7, 127 |
| Conread position: | 610-732 |
| Cow position: | chr15:26594338-26594216 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 610-766 |
| Cow position: | chr15:36278083-36277930 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 610-773 |
| Cow position: | chr15:41807429-41807268 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 150, 55 |
| Conread position: | 614-766 |
| Cow position: | chr15:1992771-1992923 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 96, 104 |
| Conread position: | 620-766 |
| Cow position: | chr15:37491608-37491470 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 651-766 |
| Cow position: | chr15:39357375-39357260 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 109, 81 |
Show alignments to all cow chromosomes.