Cow genome map
Conread name: | Ss1.1-Pig3-SRG8022E11.3 |
Conread position: | 148-381 |
Cow position: | chr16:45157499-45157270 (view UCSC Genome Browser custom track) |
Alignm length: | 235 |
Alignm identity: | 169 |
Alignm E-value: | 6e-35 |
Alignm gaps (pig, cow): | 63, 89 |
Conread position: | 157-501 |
Cow position: | chr16:19152683-19153043 (view UCSC Genome Browser custom track) |
Alignm length: | 365 |
Alignm identity: | 258 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 55, 143 |
Conread position: | 157-533 |
Cow position: | chr16:17867495-17867121 (view UCSC Genome Browser custom track) |
Alignm length: | 385 |
Alignm identity: | 290 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 53, 79 |
Conread position: | 157-765 |
Cow position: | chr16:12243571-12242957 (view UCSC Genome Browser custom track) |
Alignm length: | 635 |
Alignm identity: | 441 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 99, 52 |
Conread position: | 157-765 |
Cow position: | chr16:43850842-43850234 (view UCSC Genome Browser custom track) |
Alignm length: | 623 |
Alignm identity: | 450 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 52, 79 |
Conread position: | 157-766 |
Cow position: | chr16:41680781-41680166 (view UCSC Genome Browser custom track) |
Alignm length: | 630 |
Alignm identity: | 469 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 16 |
Conread position: | 158-418 |
Cow position: | chr16:45551825-45552073 (view UCSC Genome Browser custom track) |
Alignm length: | 262 |
Alignm identity: | 196 |
Alignm E-value: | 1.00053e-42 |
Alignm gaps (pig, cow): | 54, 78 |
Conread position: | 158-425 |
Cow position: | chr16:15734560-15734823 (view UCSC Genome Browser custom track) |
Alignm length: | 271 |
Alignm identity: | 211 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 78 |
Conread position: | 158-478 |
Cow position: | chr16:37442125-37441818 (view UCSC Genome Browser custom track) |
Alignm length: | 330 |
Alignm identity: | 226 |
Alignm E-value: | 1e-29 |
Alignm gaps (pig, cow): | 48, 79 |
Conread position: | 158-499 |
Cow position: | chr16:36911054-36910703 (view UCSC Genome Browser custom track) |
Alignm length: | 357 |
Alignm identity: | 264 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 52, 39 |
Conread position: | 158-529 |
Cow position: | chr16:29205049-29204690 (view UCSC Genome Browser custom track) |
Alignm length: | 383 |
Alignm identity: | 266 |
Alignm E-value: | 3e-40 |
Alignm gaps (pig, cow): | 54, 16 |
Conread position: | 158-765 |
Cow position: | chr16:47781286-47781897 (view UCSC Genome Browser custom track) |
Alignm length: | 624 |
Alignm identity: | 472 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 52, 79 |
Conread position: | 158-767 |
Cow position: | chr16:14799749-14799144 (view UCSC Genome Browser custom track) |
Alignm length: | 625 |
Alignm identity: | 469 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 52, 25 |
Conread position: | 158-768 |
Cow position: | chr16:4295538-4294936 (view UCSC Genome Browser custom track) |
Alignm length: | 623 |
Alignm identity: | 438 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 11, 21 |
Conread position: | 158-769 |
Cow position: | chr16:23035307-23034700 (view UCSC Genome Browser custom track) |
Alignm length: | 635 |
Alignm identity: | 455 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 54, 73 |
Conread position: | 159-767 |
Cow position: | chr16:13043810-13044443 (view UCSC Genome Browser custom track) |
Alignm length: | 642 |
Alignm identity: | 451 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 50, 77 |
Conread position: | 160-398 |
Cow position: | chr16:55674677-55674443 (view UCSC Genome Browser custom track) |
Alignm length: | 248 |
Alignm identity: | 174 |
Alignm E-value: | 2e-22 |
Alignm gaps (pig, cow): | 7, 34 |
Conread position: | 160-404 |
Cow position: | chr16:5477367-5477128 (view UCSC Genome Browser custom track) |
Alignm length: | 249 |
Alignm identity: | 167 |
Alignm E-value: | 1e-21 |
Alignm gaps (pig, cow): | 49, 42 |
Conread position: | 160-767 |
Cow position: | chr16:22786053-22785448 (view UCSC Genome Browser custom track) |
Alignm length: | 619 |
Alignm identity: | 454 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 52, 76 |
Conread position: | 161-766 |
Cow position: | chr16:53547599-53547022 (view UCSC Genome Browser custom track) |
Alignm length: | 621 |
Alignm identity: | 416 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 76 |
Conread position: | 163-726 |
Cow position: | chr16:15508931-15509487 (view UCSC Genome Browser custom track) |
Alignm length: | 582 |
Alignm identity: | 423 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 89, 49 |
Conread position: | 167-396 |
Cow position: | chr16:19445775-19446000 (view UCSC Genome Browser custom track) |
Alignm length: | 233 |
Alignm identity: | 160 |
Alignm E-value: | 2e-23 |
Alignm gaps (pig, cow): | 43, 69 |
Conread position: | 167-535 |
Cow position: | chr16:52814177-52813840 (view UCSC Genome Browser custom track) |
Alignm length: | 373 |
Alignm identity: | 265 |
Alignm E-value: | 7e-37 |
Alignm gaps (pig, cow): | 45, 15 |
Conread position: | 191-477 |
Cow position: | chr16:56374236-56373937 (view UCSC Genome Browser custom track) |
Alignm length: | 301 |
Alignm identity: | 198 |
Alignm E-value: | 6e-25 |
Alignm gaps (pig, cow): | 63, 54 |
Conread position: | 193-766 |
Cow position: | chr16:30572590-30572030 (view UCSC Genome Browser custom track) |
Alignm length: | 589 |
Alignm identity: | 423 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 16, 41 |
Conread position: | 203-379 |
Cow position: | chr16:23747567-23747391 (view UCSC Genome Browser custom track) |
Alignm length: | 179 |
Alignm identity: | 127 |
Alignm E-value: | 5e-23 |
Alignm gaps (pig, cow): | 49, 32 |
Conread position: | 209-766 |
Cow position: | chr16:16118496-16119055 (view UCSC Genome Browser custom track) |
Alignm length: | 572 |
Alignm identity: | 399 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 43, 26 |
Conread position: | 217-560 |
Cow position: | chr16:31375127-31374787 (view UCSC Genome Browser custom track) |
Alignm length: | 355 |
Alignm identity: | 253 |
Alignm E-value: | 5.04467e-44 |
Alignm gaps (pig, cow): | 39, 10 |
Conread position: | 221-558 |
Cow position: | chr16:14443962-14444294 (view UCSC Genome Browser custom track) |
Alignm length: | 343 |
Alignm identity: | 242 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 31, 164 |
Conread position: | 252-418 |
Cow position: | chr16:2375930-2375760 (view UCSC Genome Browser custom track) |
Alignm length: | 172 |
Alignm identity: | 126 |
Alignm E-value: | 6e-25 |
Alignm gaps (pig, cow): | 131, 42 |
Conread position: | 255-418 |
Cow position: | chr16:11161500-11161657 (view UCSC Genome Browser custom track) |
Alignm length: | 164 |
Alignm identity: | 131 |
Alignm E-value: | 2e-33 |
Alignm gaps (pig, cow): | 49, 0 |
Conread position: | 255-766 |
Cow position: | chr16:53516543-53516053 (view UCSC Genome Browser custom track) |
Alignm length: | 521 |
Alignm identity: | 360 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 153, 35 |
Conread position: | 275-620 |
Cow position: | chr16:47391148-47391477 (view UCSC Genome Browser custom track) |
Alignm length: | 348 |
Alignm identity: | 251 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 17, 77 |
Conread position: | 283-493 |
Cow position: | chr16:5131642-5131427 (view UCSC Genome Browser custom track) |
Alignm length: | 216 |
Alignm identity: | 153 |
Alignm E-value: | 1e-29 |
Alignm gaps (pig, cow): | 6, 0 |
Conread position: | 284-490 |
Cow position: | chr16:2732025-2731821 (view UCSC Genome Browser custom track) |
Alignm length: | 207 |
Alignm identity: | 145 |
Alignm E-value: | 3e-28 |
Alignm gaps (pig, cow): | 69, 0 |
Conread position: | 327-621 |
Cow position: | chr16:42406011-42406309 (view UCSC Genome Browser custom track) |
Alignm length: | 307 |
Alignm identity: | 220 |
Alignm E-value: | 4.00001e-41 |
Alignm gaps (pig, cow): | 64, 121 |
Conread position: | 344-726 |
Cow position: | chr16:17393848-17393472 (view UCSC Genome Browser custom track) |
Alignm length: | 397 |
Alignm identity: | 270 |
Alignm E-value: | 4e-32 |
Alignm gaps (pig, cow): | 7, 23 |
Conread position: | 361-771 |
Cow position: | chr16:48894631-48894225 (view UCSC Genome Browser custom track) |
Alignm length: | 415 |
Alignm identity: | 316 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 100, 74 |
Conread position: | 377-754 |
Cow position: | chr16:17003646-17004005 (view UCSC Genome Browser custom track) |
Alignm length: | 387 |
Alignm identity: | 258 |
Alignm E-value: | 3e-27 |
Alignm gaps (pig, cow): | 28, 9 |
Conread position: | 377-768 |
Cow position: | chr16:45057608-45058006 (view UCSC Genome Browser custom track) |
Alignm length: | 413 |
Alignm identity: | 291 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 42, 168 |
Conread position: | 378-526 |
Cow position: | chr16:12473523-12473678 (view UCSC Genome Browser custom track) |
Alignm length: | 156 |
Alignm identity: | 115 |
Alignm E-value: | 5e-22 |
Alignm gaps (pig, cow): | 42, 0 |
Conread position: | 387-653 |
Cow position: | chr16:608688-608402 (view UCSC Genome Browser custom track) |
Alignm length: | 287 |
Alignm identity: | 204 |
Alignm E-value: | 1e-32 |
Alignm gaps (pig, cow): | 62, 0 |
Conread position: | 387-690 |
Cow position: | chr16:9703399-9703088 (view UCSC Genome Browser custom track) |
Alignm length: | 324 |
Alignm identity: | 230 |
Alignm E-value: | 5e-34 |
Alignm gaps (pig, cow): | 33, 9 |
Conread position: | 425-749 |
Cow position: | chr16:2371542-2371237 (view UCSC Genome Browser custom track) |
Alignm length: | 331 |
Alignm identity: | 246 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 74, 103 |
Conread position: | 439-766 |
Cow position: | chr16:52650249-52649923 (view UCSC Genome Browser custom track) |
Alignm length: | 334 |
Alignm identity: | 251 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 59, 99 |
Conread position: | 450-732 |
Cow position: | chr16:14423184-14423466 (view UCSC Genome Browser custom track) |
Alignm length: | 291 |
Alignm identity: | 217 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 17, 46 |
Conread position: | 460-765 |
Cow position: | chr16:23878634-23878955 (view UCSC Genome Browser custom track) |
Alignm length: | 328 |
Alignm identity: | 239 |
Alignm E-value: | 5.00264e-43 |
Alignm gaps (pig, cow): | 44, 71 |
Conread position: | 460-767 |
Cow position: | chr16:43850216-43849923 (view UCSC Genome Browser custom track) |
Alignm length: | 312 |
Alignm identity: | 230 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 64 |
Conread position: | 460-767 |
Cow position: | chr16:56373587-56373287 (view UCSC Genome Browser custom track) |
Alignm length: | 314 |
Alignm identity: | 238 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 44, 78 |
Conread position: | 465-756 |
Cow position: | chr16:23301631-23301918 (view UCSC Genome Browser custom track) |
Alignm length: | 299 |
Alignm identity: | 212 |
Alignm E-value: | 2e-36 |
Alignm gaps (pig, cow): | 39, 75 |
Conread position: | 466-755 |
Cow position: | chr16:30109533-30109250 (view UCSC Genome Browser custom track) |
Alignm length: | 301 |
Alignm identity: | 211 |
Alignm E-value: | 1e-31 |
Alignm gaps (pig, cow): | 124, 73 |
Conread position: | 468-766 |
Cow position: | chr16:48604490-48604208 (view UCSC Genome Browser custom track) |
Alignm length: | 304 |
Alignm identity: | 210 |
Alignm E-value: | 2e-25 |
Alignm gaps (pig, cow): | 35, 60 |
Conread position: | 477-753 |
Cow position: | chr16:37441603-37441331 (view UCSC Genome Browser custom track) |
Alignm length: | 284 |
Alignm identity: | 213 |
Alignm E-value: | 5.60519e-45 |
Alignm gaps (pig, cow): | 22, 61 |
Conread position: | 479-680 |
Cow position: | chr16:37526963-37527162 (view UCSC Genome Browser custom track) |
Alignm length: | 211 |
Alignm identity: | 154 |
Alignm E-value: | 5e-23 |
Alignm gaps (pig, cow): | 25, 19 |
Conread position: | 486-769 |
Cow position: | chr16:4854647-4854376 (view UCSC Genome Browser custom track) |
Alignm length: | 287 |
Alignm identity: | 212 |
Alignm E-value: | 1.00053e-42 |
Alignm gaps (pig, cow): | 105, 16 |
Conread position: | 488-753 |
Cow position: | chr16:37508405-37508663 (view UCSC Genome Browser custom track) |
Alignm length: | 271 |
Alignm identity: | 207 |
Alignm E-value: | 1.96182e-44 |
Alignm gaps (pig, cow): | 99, 10 |
Conread position: | 496-771 |
Cow position: | chr16:47069478-47069723 (view UCSC Genome Browser custom track) |
Alignm length: | 276 |
Alignm identity: | 198 |
Alignm E-value: | 8e-27 |
Alignm gaps (pig, cow): | 35, 0 |
Conread position: | 501-766 |
Cow position: | chr16:2722716-2722448 (view UCSC Genome Browser custom track) |
Alignm length: | 278 |
Alignm identity: | 215 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 90, 36 |
Conread position: | 520-766 |
Cow position: | chr16:17365434-17365685 (view UCSC Genome Browser custom track) |
Alignm length: | 256 |
Alignm identity: | 175 |
Alignm E-value: | 2e-26 |
Alignm gaps (pig, cow): | 70, 46 |
Conread position: | 538-758 |
Cow position: | chr16:32352480-32352702 (view UCSC Genome Browser custom track) |
Alignm length: | 225 |
Alignm identity: | 171 |
Alignm E-value: | 3.99931e-42 |
Alignm gaps (pig, cow): | 74, 158 |
Conread position: | 539-766 |
Cow position: | chr16:14444542-14444768 (view UCSC Genome Browser custom track) |
Alignm length: | 233 |
Alignm identity: | 178 |
Alignm E-value: | 9.99995e-41 |
Alignm gaps (pig, cow): | 53, 27 |
Conread position: | 543-766 |
Cow position: | chr16:24038462-24038693 (view UCSC Genome Browser custom track) |
Alignm length: | 233 |
Alignm identity: | 175 |
Alignm E-value: | 1e-39 |
Alignm gaps (pig, cow): | 49, 199 |
Conread position: | 544-766 |
Cow position: | chr16:14084781-14084554 (view UCSC Genome Browser custom track) |
Alignm length: | 229 |
Alignm identity: | 188 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 48, 194 |
Conread position: | 547-764 |
Cow position: | chr16:31374536-31374312 (view UCSC Genome Browser custom track) |
Alignm length: | 225 |
Alignm identity: | 175 |
Alignm E-value: | 5.60519e-45 |
Alignm gaps (pig, cow): | 59, 0 |
Conread position: | 548-686 |
Cow position: | chr16:29204515-29204372 (view UCSC Genome Browser custom track) |
Alignm length: | 147 |
Alignm identity: | 117 |
Alignm E-value: | 6e-25 |
Alignm gaps (pig, cow): | 42, 117 |
Conread position: | 556-757 |
Cow position: | chr16:17219069-17218875 (view UCSC Genome Browser custom track) |
Alignm length: | 205 |
Alignm identity: | 155 |
Alignm E-value: | 1e-29 |
Alignm gaps (pig, cow): | 29, 64 |
Conread position: | 556-758 |
Cow position: | chr16:5131400-5131195 (view UCSC Genome Browser custom track) |
Alignm length: | 212 |
Alignm identity: | 157 |
Alignm E-value: | 3e-29 |
Alignm gaps (pig, cow): | 36, 44 |
Conread position: | 560-767 |
Cow position: | chr16:13209712-13209911 (view UCSC Genome Browser custom track) |
Alignm length: | 208 |
Alignm identity: | 149 |
Alignm E-value: | 8e-27 |
Alignm gaps (pig, cow): | 30, 0 |
Conread position: | 571-769 |
Cow position: | chr16:51456715-51456913 (view UCSC Genome Browser custom track) |
Alignm length: | 202 |
Alignm identity: | 142 |
Alignm E-value: | 6e-25 |
Alignm gaps (pig, cow): | 19, 32 |
Conread position: | 572-739 |
Cow position: | chr16:16622450-16622294 (view UCSC Genome Browser custom track) |
Alignm length: | 168 |
Alignm identity: | 128 |
Alignm E-value: | 2e-23 |
Alignm gaps (pig, cow): | 33, 0 |
Conread position: | 573-765 |
Cow position: | chr16:52813521-52813340 (view UCSC Genome Browser custom track) |
Alignm length: | 196 |
Alignm identity: | 152 |
Alignm E-value: | 1e-29 |
Alignm gaps (pig, cow): | 19, 34 |
Conread position: | 610-768 |
Cow position: | chr16:26106593-26106749 (view UCSC Genome Browser custom track) |
Alignm length: | 160 |
Alignm identity: | 125 |
Alignm E-value: | 1e-29 |
Alignm gaps (pig, cow): | 155, 38 |
Conread position: | 617-766 |
Cow position: | chr16:37024803-37024659 (view UCSC Genome Browser custom track) |
Alignm length: | 150 |
Alignm identity: | 118 |
Alignm E-value: | 9e-28 |
Alignm gaps (pig, cow): | 59, 0 |
Conread position: | 621-754 |
Cow position: | chr16:38397886-38397755 (view UCSC Genome Browser custom track) |
Alignm length: | 134 |
Alignm identity: | 102 |
Alignm E-value: | 5e-22 |
Alignm gaps (pig, cow): | 60, 0 |
Conread position: | 621-764 |
Cow position: | chr16:27075611-27075755 (view UCSC Genome Browser custom track) |
Alignm length: | 146 |
Alignm identity: | 114 |
Alignm E-value: | 8e-27 |
Alignm gaps (pig, cow): | 52, 114 |
Conread position: | 621-766 |
Cow position: | chr16:10198441-10198586 (view UCSC Genome Browser custom track) |
Alignm length: | 147 |
Alignm identity: | 120 |
Alignm E-value: | 5e-33 |
Alignm gaps (pig, cow): | 25, 113 |
Show alignments to all cow chromosomes.