Cow genome map

Conread name: Ss1.1-Pig3-SRG8022E11.3

Conread position: 148-381
Cow position: chr16:45157499-45157270 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 169
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 63, 89

Conread position: 157-501
Cow position: chr16:19152683-19153043 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 143

Conread position: 157-533
Cow position: chr16:17867495-17867121 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 79

Conread position: 157-765
Cow position: chr16:12243571-12242957 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 52

Conread position: 157-765
Cow position: chr16:43850842-43850234 (view UCSC Genome Browser custom track)
Alignm length: 623
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 79

Conread position: 157-766
Cow position: chr16:41680781-41680166 (view UCSC Genome Browser custom track)
Alignm length: 630
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 16

Conread position: 158-418
Cow position: chr16:45551825-45552073 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 196
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 54, 78

Conread position: 158-425
Cow position: chr16:15734560-15734823 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 78

Conread position: 158-478
Cow position: chr16:37442125-37441818 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 226
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 48, 79

Conread position: 158-499
Cow position: chr16:36911054-36910703 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 39

Conread position: 158-529
Cow position: chr16:29205049-29204690 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 266
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 54, 16

Conread position: 158-765
Cow position: chr16:47781286-47781897 (view UCSC Genome Browser custom track)
Alignm length: 624
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 79

Conread position: 158-767
Cow position: chr16:14799749-14799144 (view UCSC Genome Browser custom track)
Alignm length: 625
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 25

Conread position: 158-768
Cow position: chr16:4295538-4294936 (view UCSC Genome Browser custom track)
Alignm length: 623
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 21

Conread position: 158-769
Cow position: chr16:23035307-23034700 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 73

Conread position: 159-767
Cow position: chr16:13043810-13044443 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 77

Conread position: 160-398
Cow position: chr16:55674677-55674443 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 174
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 7, 34

Conread position: 160-404
Cow position: chr16:5477367-5477128 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 167
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 49, 42

Conread position: 160-767
Cow position: chr16:22786053-22785448 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 76

Conread position: 161-766
Cow position: chr16:53547599-53547022 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 76

Conread position: 163-726
Cow position: chr16:15508931-15509487 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 49

Conread position: 167-396
Cow position: chr16:19445775-19446000 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 160
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 43, 69

Conread position: 167-535
Cow position: chr16:52814177-52813840 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 265
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 45, 15

Conread position: 191-477
Cow position: chr16:56374236-56373937 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 198
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 63, 54

Conread position: 193-766
Cow position: chr16:30572590-30572030 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 41

Conread position: 203-379
Cow position: chr16:23747567-23747391 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 127
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 49, 32

Conread position: 209-766
Cow position: chr16:16118496-16119055 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 26

Conread position: 217-560
Cow position: chr16:31375127-31374787 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 253
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 39, 10

Conread position: 221-558
Cow position: chr16:14443962-14444294 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 164

Conread position: 252-418
Cow position: chr16:2375930-2375760 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 126
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 131, 42

Conread position: 255-418
Cow position: chr16:11161500-11161657 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 131
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 49, 0

Conread position: 255-766
Cow position: chr16:53516543-53516053 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 35

Conread position: 275-620
Cow position: chr16:47391148-47391477 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 77

Conread position: 283-493
Cow position: chr16:5131642-5131427 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 153
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 6, 0

Conread position: 284-490
Cow position: chr16:2732025-2731821 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 145
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 69, 0

Conread position: 327-621
Cow position: chr16:42406011-42406309 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 220
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 64, 121

Conread position: 344-726
Cow position: chr16:17393848-17393472 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 270
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 7, 23

Conread position: 361-771
Cow position: chr16:48894631-48894225 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 74

Conread position: 377-754
Cow position: chr16:17003646-17004005 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 258
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 28, 9

Conread position: 377-768
Cow position: chr16:45057608-45058006 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 168

Conread position: 378-526
Cow position: chr16:12473523-12473678 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 115
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 42, 0

Conread position: 387-653
Cow position: chr16:608688-608402 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 204
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 62, 0

Conread position: 387-690
Cow position: chr16:9703399-9703088 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 230
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 33, 9

Conread position: 425-749
Cow position: chr16:2371542-2371237 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 246
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 74, 103

Conread position: 439-766
Cow position: chr16:52650249-52649923 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 99

Conread position: 450-732
Cow position: chr16:14423184-14423466 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 46

Conread position: 460-765
Cow position: chr16:23878634-23878955 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 239
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 44, 71

Conread position: 460-767
Cow position: chr16:43850216-43849923 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 64

Conread position: 460-767
Cow position: chr16:56373587-56373287 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 78

Conread position: 465-756
Cow position: chr16:23301631-23301918 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 212
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 39, 75

Conread position: 466-755
Cow position: chr16:30109533-30109250 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 211
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 124, 73

Conread position: 468-766
Cow position: chr16:48604490-48604208 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 210
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 35, 60

Conread position: 477-753
Cow position: chr16:37441603-37441331 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 213
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 22, 61

Conread position: 479-680
Cow position: chr16:37526963-37527162 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 154
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 25, 19

Conread position: 486-769
Cow position: chr16:4854647-4854376 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 212
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 105, 16

Conread position: 488-753
Cow position: chr16:37508405-37508663 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 207
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 99, 10

Conread position: 496-771
Cow position: chr16:47069478-47069723 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 198
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 35, 0

Conread position: 501-766
Cow position: chr16:2722716-2722448 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 36

Conread position: 520-766
Cow position: chr16:17365434-17365685 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 175
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 70, 46

Conread position: 538-758
Cow position: chr16:32352480-32352702 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 171
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 74, 158

Conread position: 539-766
Cow position: chr16:14444542-14444768 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 178
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 53, 27

Conread position: 543-766
Cow position: chr16:24038462-24038693 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 175
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 49, 199

Conread position: 544-766
Cow position: chr16:14084781-14084554 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 194

Conread position: 547-764
Cow position: chr16:31374536-31374312 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 175
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 59, 0

Conread position: 548-686
Cow position: chr16:29204515-29204372 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 117
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 42, 117

Conread position: 556-757
Cow position: chr16:17219069-17218875 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 155
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 29, 64

Conread position: 556-758
Cow position: chr16:5131400-5131195 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 157
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 36, 44

Conread position: 560-767
Cow position: chr16:13209712-13209911 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 149
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 30, 0

Conread position: 571-769
Cow position: chr16:51456715-51456913 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 142
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 19, 32

Conread position: 572-739
Cow position: chr16:16622450-16622294 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 128
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 33, 0

Conread position: 573-765
Cow position: chr16:52813521-52813340 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 152
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 19, 34

Conread position: 610-768
Cow position: chr16:26106593-26106749 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 125
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 155, 38

Conread position: 617-766
Cow position: chr16:37024803-37024659 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 118
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 59, 0

Conread position: 621-754
Cow position: chr16:38397886-38397755 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 102
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 60, 0

Conread position: 621-764
Cow position: chr16:27075611-27075755 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 114
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 52, 114

Conread position: 621-766
Cow position: chr16:10198441-10198586 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 120
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 25, 113

Show alignments to all cow chromosomes.