Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8022E11.3 |
| Conread position: | 153-535 |
| Cow position: | chr17:24608844-24609238 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 19 |
| Conread position: | 158-379 |
| Cow position: | chr17:11374668-11374445 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 52, 78 |
| Conread position: | 158-633 |
| Cow position: | chr17:20208798-20208311 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 78 |
| Conread position: | 158-680 |
| Cow position: | chr17:1310227-1309709 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 78 |
| Conread position: | 158-766 |
| Cow position: | chr17:701434-702038 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 25 |
| Conread position: | 159-354 |
| Cow position: | chr17:933469-933666 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 55, 77 |
| Conread position: | 159-359 |
| Cow position: | chr17:15450388-15450587 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 51, 31 |
| Conread position: | 160-766 |
| Cow position: | chr17:28847630-28847011 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 76 |
| Conread position: | 167-379 |
| Cow position: | chr17:8035756-8035970 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 39, 47 |
| Conread position: | 170-500 |
| Cow position: | chr17:13236657-13236325 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 241 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 40, 55 |
| Conread position: | 176-696 |
| Cow position: | chr17:30358460-30357978 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 61 |
| Conread position: | 193-630 |
| Cow position: | chr17:25117032-25117466 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 27 |
| Conread position: | 255-381 |
| Cow position: | chr17:36149232-36149358 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 255-390 |
| Cow position: | chr17:7210476-7210611 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 276-767 |
| Cow position: | chr17:32451524-32451018 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 9 |
| Conread position: | 278-416 |
| Cow position: | chr17:403765-403897 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 313-769 |
| Cow position: | chr17:2735886-2736354 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 150 |
| Conread position: | 356-757 |
| Cow position: | chr17:19789635-19789252 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 248, 65 |
| Conread position: | 378-757 |
| Cow position: | chr17:6980506-6980118 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 283 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 42, 63 |
| Conread position: | 380-765 |
| Cow position: | chr17:18417997-18417601 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 283 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 40, 139 |
| Conread position: | 387-766 |
| Cow position: | chr17:27622658-27622279 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 166 |
| Conread position: | 397-773 |
| Cow position: | chr17:7210886-7211256 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 88 |
| Conread position: | 414-706 |
| Cow position: | chr17:3849017-3849306 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 89, 22 |
| Conread position: | 452-756 |
| Cow position: | chr17:11225508-11225808 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 64 |
| Conread position: | 459-768 |
| Cow position: | chr17:3223695-3223985 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 37 |
| Conread position: | 461-687 |
| Cow position: | chr17:27623645-27623423 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 41, 85 |
| Conread position: | 462-749 |
| Cow position: | chr17:13703631-13703913 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 41, 25 |
| Conread position: | 483-764 |
| Cow position: | chr17:17500998-17500733 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 208 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 20, 55 |
| Conread position: | 489-771 |
| Cow position: | chr17:37722778-37722510 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 14, 47 |
| Conread position: | 497-755 |
| Cow position: | chr17:15450865-15451115 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 95, 41 |
| Conread position: | 517-766 |
| Cow position: | chr17:10850967-10850722 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 73, 153 |
| Conread position: | 535-766 |
| Cow position: | chr17:12306584-12306813 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 57, 20 |
| Conread position: | 536-700 |
| Cow position: | chr17:30330729-30330890 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 80, 19 |
| Conread position: | 536-754 |
| Cow position: | chr17:404258-404488 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 56, 210 |
| Conread position: | 536-762 |
| Cow position: | chr17:33271378-33271149 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 179 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 56, 33 |
| Conread position: | 544-752 |
| Cow position: | chr17:1364669-1364466 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 46, 72 |
| Conread position: | 548-766 |
| Cow position: | chr17:26481234-26481457 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 174 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 44, 192 |
| Conread position: | 552-766 |
| Cow position: | chr17:43143378-43143155 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 40, 131 |
| Conread position: | 558-756 |
| Cow position: | chr17:10261537-10261735 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 34, 127 |
| Conread position: | 561-767 |
| Cow position: | chr17:41899177-41898968 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 567-766 |
| Cow position: | chr17:4625196-4625395 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 38, 106 |
| Conread position: | 570-723 |
| Cow position: | chr17:37166541-37166393 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 20, 30 |
| Conread position: | 587-766 |
| Cow position: | chr17:14779999-14780178 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 29, 145 |
| Conread position: | 605-757 |
| Cow position: | chr17:26630736-26630587 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 614-757 |
| Cow position: | chr17:13235996-13236138 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 617-769 |
| Cow position: | chr17:25117561-25117712 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 629-766 |
| Cow position: | chr17:10436851-10436718 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 648-766 |
| Cow position: | chr17:3797791-3797908 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 651-767 |
| Cow position: | chr17:45212548-45212433 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 82, 0 |
Show alignments to all cow chromosomes.