Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8022E11.3 |
| Conread position: | 155-311 |
| Cow position: | chr18:23317157-23316999 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 5, 82 |
| Conread position: | 157-339 |
| Cow position: | chr18:16258815-16258996 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 55, 73 |
| Conread position: | 158-388 |
| Cow position: | chr18:1062050-1061829 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 52, 78 |
| Conread position: | 158-404 |
| Cow position: | chr18:23669312-23669061 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 52, 72 |
| Conread position: | 158-415 |
| Cow position: | chr18:31393548-31393798 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 80 |
| Conread position: | 158-502 |
| Cow position: | chr18:8170146-8170488 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 249 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 52, 18 |
| Conread position: | 158-706 |
| Cow position: | chr18:29224650-29225183 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 78 |
| Conread position: | 158-766 |
| Cow position: | chr18:39475298-39474703 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 53 |
| Conread position: | 158-767 |
| Cow position: | chr18:28085529-28086142 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 74 |
| Conread position: | 158-771 |
| Cow position: | chr18:32860614-32861219 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 473 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 78 |
| Conread position: | 163-766 |
| Cow position: | chr18:22065385-22064817 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 73 |
| Conread position: | 166-394 |
| Cow position: | chr18:21291042-21290812 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 46, 71 |
| Conread position: | 166-757 |
| Cow position: | chr18:25847041-25846482 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 70 |
| Conread position: | 187-509 |
| Cow position: | chr18:48549973-48550296 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 241 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 23, 49 |
| Conread position: | 203-467 |
| Cow position: | chr18:8204529-8204797 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 187 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 9, 23 |
| Conread position: | 259-622 |
| Cow position: | chr18:35471744-35471386 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 123 |
| Conread position: | 275-766 |
| Cow position: | chr18:1700667-1701146 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 88 |
| Conread position: | 282-680 |
| Cow position: | chr18:23316689-23316294 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 7 |
| Conread position: | 286-765 |
| Cow position: | chr18:22433703-22433224 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 67 |
| Conread position: | 298-764 |
| Cow position: | chr18:27404992-27405446 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 285, 110 |
| Conread position: | 334-766 |
| Cow position: | chr18:16259394-16259829 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 41 |
| Conread position: | 365-768 |
| Cow position: | chr18:50880635-50881054 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 104 |
| Conread position: | 378-647 |
| Cow position: | chr18:33896010-33896278 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 41, 63 |
| Conread position: | 386-726 |
| Cow position: | chr18:5060373-5060010 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 34, 88 |
| Conread position: | 392-588 |
| Cow position: | chr18:21290586-21290390 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 28, 49 |
| Conread position: | 431-596 |
| Cow position: | chr18:16539144-16539306 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 72, 25 |
| Conread position: | 432-765 |
| Cow position: | chr18:24664209-24663885 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 63 |
| Conread position: | 432-766 |
| Cow position: | chr18:53047825-53047494 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 106 |
| Conread position: | 463-758 |
| Cow position: | chr18:29081276-29081567 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 40, 75 |
| Conread position: | 483-766 |
| Cow position: | chr18:1129165-1129457 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 220 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 22, 96 |
| Conread position: | 492-755 |
| Cow position: | chr18:50242349-50242610 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 198 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 9, 39 |
| Conread position: | 492-758 |
| Cow position: | chr18:26866121-26866389 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 10, 230 |
| Conread position: | 492-766 |
| Cow position: | chr18:21123232-21122966 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 213 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 11, 40 |
| Conread position: | 509-769 |
| Cow position: | chr18:49436659-49436920 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 31 |
| Conread position: | 530-703 |
| Cow position: | chr18:55748949-55748768 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 14, 34 |
| Conread position: | 542-733 |
| Cow position: | chr18:8170755-8170960 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 49, 93 |
| Conread position: | 556-766 |
| Cow position: | chr18:32371761-32371560 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 36, 54 |
| Conread position: | 558-766 |
| Cow position: | chr18:52870961-52871173 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 39, 34 |
| Conread position: | 564-762 |
| Cow position: | chr18:12078748-12078542 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 37, 178 |
| Conread position: | 567-758 |
| Cow position: | chr18:36456398-36456594 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 159 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 25, 172 |
| Conread position: | 608-757 |
| Cow position: | chr18:1740715-1740566 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 14, 126 |
| Conread position: | 610-753 |
| Cow position: | chr18:26667690-26667826 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 51, 14 |
| Conread position: | 610-765 |
| Cow position: | chr18:1195888-1196033 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 610-765 |
| Cow position: | chr18:19213452-19213299 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 628-766 |
| Cow position: | chr18:35471136-35470999 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 629-766 |
| Cow position: | chr18:32286651-32286785 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 131, 52 |
| Conread position: | 656-766 |
| Cow position: | chr18:23503386-23503279 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 94 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 76, 0 |
Show alignments to all cow chromosomes.