Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8022E11.3 |
| Conread position: | 143-379 |
| Cow position: | chr19:31395937-31395698 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 17, 95 |
| Conread position: | 158-344 |
| Cow position: | chr19:30452791-30452603 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 54, 78 |
| Conread position: | 158-380 |
| Cow position: | chr19:42706382-42706170 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 55, 32 |
| Conread position: | 158-490 |
| Cow position: | chr19:36478875-36479200 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 233 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 54, 67 |
| Conread position: | 158-565 |
| Cow position: | chr19:14534667-14534290 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 287 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 44, 25 |
| Conread position: | 158-631 |
| Cow position: | chr19:3082062-3082531 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 78 |
| Conread position: | 158-765 |
| Cow position: | chr19:30746385-30747005 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 78 |
| Conread position: | 158-766 |
| Cow position: | chr19:30052016-30051425 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 76 |
| Conread position: | 159-381 |
| Cow position: | chr19:28800159-28799933 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 24, 94 |
| Conread position: | 159-497 |
| Cow position: | chr19:4609841-4610167 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 14 |
| Conread position: | 159-567 |
| Cow position: | chr19:426290-425892 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 282 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 52, 77 |
| Conread position: | 160-359 |
| Cow position: | chr19:38396081-38395882 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 53, 45 |
| Conread position: | 163-554 |
| Cow position: | chr19:33285320-33284923 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 72 |
| Conread position: | 166-691 |
| Cow position: | chr19:19242090-19242591 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 10 |
| Conread position: | 167-484 |
| Cow position: | chr19:20700067-20700397 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 70 |
| Conread position: | 245-404 |
| Cow position: | chr19:4600422-4600578 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 291-766 |
| Cow position: | chr19:30350110-30349650 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 78 |
| Conread position: | 294-766 |
| Cow position: | chr19:25846443-25846892 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 79 |
| Conread position: | 318-766 |
| Cow position: | chr19:30352257-30352668 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 310 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 45, 69 |
| Conread position: | 319-510 |
| Cow position: | chr19:35873836-35873630 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 77, 24 |
| Conread position: | 328-765 |
| Cow position: | chr19:4600652-4601088 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 58 |
| Conread position: | 341-518 |
| Cow position: | chr19:30452372-30452194 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 78, 122 |
| Conread position: | 364-720 |
| Cow position: | chr19:22670676-22670319 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 32 |
| Conread position: | 375-725 |
| Cow position: | chr19:30188596-30188236 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 22 |
| Conread position: | 377-688 |
| Cow position: | chr19:51070686-51070374 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 234 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 43, 153 |
| Conread position: | 378-674 |
| Cow position: | chr19:49483947-49484248 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 42, 9 |
| Conread position: | 420-765 |
| Cow position: | chr19:28560575-28560224 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 268 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 16, 117 |
| Conread position: | 444-758 |
| Cow position: | chr19:55898311-55898613 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 220 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 157, 42 |
| Conread position: | 447-765 |
| Cow position: | chr19:6362554-6362870 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 48 |
| Conread position: | 456-754 |
| Cow position: | chr19:4548377-4548079 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 40, 73 |
| Conread position: | 460-633 |
| Cow position: | chr19:33954976-33955142 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 43, 57 |
| Conread position: | 460-766 |
| Cow position: | chr19:28606074-28605767 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 68 |
| Conread position: | 460-766 |
| Cow position: | chr19:30880099-30880403 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 71 |
| Conread position: | 473-766 |
| Cow position: | chr19:36388633-36388355 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 64 |
| Conread position: | 479-766 |
| Cow position: | chr19:47772322-47772605 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 59 |
| Conread position: | 483-766 |
| Cow position: | chr19:41504271-41504554 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 55 |
| Conread position: | 488-753 |
| Cow position: | chr19:46189157-46188910 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 193 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 11, 51 |
| Conread position: | 489-740 |
| Cow position: | chr19:13448471-13448724 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 49 |
| Conread position: | 492-700 |
| Cow position: | chr19:50843568-50843787 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 44, 163 |
| Conread position: | 502-766 |
| Cow position: | chr19:6478494-6478227 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 200 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 90, 18 |
| Conread position: | 503-765 |
| Cow position: | chr19:55418382-55418630 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 536-732 |
| Cow position: | chr19:35026818-35026618 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 53, 129 |
| Conread position: | 536-766 |
| Cow position: | chr19:33590064-33590307 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 211 |
| Conread position: | 547-714 |
| Cow position: | chr19:36479200-36479364 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 60, 22 |
| Conread position: | 551-766 |
| Cow position: | chr19:30451665-30451463 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 33, 94 |
| Conread position: | 561-764 |
| Cow position: | chr19:30385144-30385353 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 31, 109 |
| Conread position: | 571-767 |
| Cow position: | chr19:14534093-14533892 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 21, 32 |
| Conread position: | 589-766 |
| Cow position: | chr19:35826805-35826989 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 29, 150 |
| Conread position: | 589-769 |
| Cow position: | chr19:425890-425717 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 21, 56 |
| Conread position: | 605-765 |
| Cow position: | chr19:3082527-3082684 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 27, 9 |
| Conread position: | 609-726 |
| Cow position: | chr19:12130791-12130673 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 610-766 |
| Cow position: | chr19:12478116-12477960 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 100, 108 |
| Conread position: | 610-766 |
| Cow position: | chr19:39299461-39299312 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 66, 83 |
| Conread position: | 614-765 |
| Cow position: | chr19:41554696-41554840 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 617-770 |
| Cow position: | chr19:33847809-33847963 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 68, 118 |
| Conread position: | 625-766 |
| Cow position: | chr19:33955205-33955346 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 16, 108 |
| Conread position: | 648-766 |
| Cow position: | chr19:37601690-37601574 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 22, 0 |
Show alignments to all cow chromosomes.