Cow genome map

Conread name: Ss1.1-Pig3-SRG8022E11.3

Conread position: 155-390
Cow position: chr2:11467658-11467424 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 162
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 9, 55

Conread position: 157-374
Cow position: chr2:69982406-69982619 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 162
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 54, 79

Conread position: 157-569
Cow position: chr2:62674252-62673848 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 74

Conread position: 157-725
Cow position: chr2:41490635-41491201 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 79

Conread position: 158-329
Cow position: chr2:19749596-19749767 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 126
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 54, 13

Conread position: 158-331
Cow position: chr2:51827667-51827496 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 128
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 52, 78

Conread position: 158-332
Cow position: chr2:54890309-54890476 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 133
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 52, 72

Conread position: 158-358
Cow position: chr2:85055985-85056187 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 147
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 54, 68

Conread position: 158-373
Cow position: chr2:39508459-39508675 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 148
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 52, 70

Conread position: 158-379
Cow position: chr2:31910036-31909820 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 154
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 90, 46

Conread position: 158-411
Cow position: chr2:46141177-46140929 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 180
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 52, 78

Conread position: 158-416
Cow position: chr2:27145378-27145112 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 187
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 91, 77

Conread position: 158-555
Cow position: chr2:18249902-18249492 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 45

Conread position: 158-660
Cow position: chr2:77968513-77968015 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 78

Conread position: 158-706
Cow position: chr2:53716993-53716448 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 78

Conread position: 158-765
Cow position: chr2:63288162-63287558 (view UCSC Genome Browser custom track)
Alignm length: 625
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 68

Conread position: 158-766
Cow position: chr2:33791491-33790884 (view UCSC Genome Browser custom track)
Alignm length: 624
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 78

Conread position: 158-766
Cow position: chr2:72598793-72599413 (view UCSC Genome Browser custom track)
Alignm length: 631
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 78

Conread position: 159-774
Cow position: chr2:43345302-43344682 (view UCSC Genome Browser custom track)
Alignm length: 633
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 77

Conread position: 160-343
Cow position: chr2:20301944-20302124 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 137
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 50, 70

Conread position: 160-381
Cow position: chr2:6292621-6292844 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 157
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 39, 90

Conread position: 160-535
Cow position: chr2:64073539-64073928 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 77

Conread position: 160-764
Cow position: chr2:74388130-74387531 (view UCSC Genome Browser custom track)
Alignm length: 620
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 43

Conread position: 162-379
Cow position: chr2:35447875-35447656 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 154
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 49, 74

Conread position: 166-376
Cow position: chr2:908415-908627 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 146
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 40, 89

Conread position: 166-390
Cow position: chr2:27318851-27319077 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 154
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 44, 70

Conread position: 167-380
Cow position: chr2:66435283-66435492 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 161
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 47, 20

Conread position: 167-647
Cow position: chr2:71121024-71121494 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 70

Conread position: 167-679
Cow position: chr2:32393411-32393907 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 69

Conread position: 169-766
Cow position: chr2:21697733-21697128 (view UCSC Genome Browser custom track)
Alignm length: 620
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 169

Conread position: 176-484
Cow position: chr2:76055549-76055237 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 44

Conread position: 178-767
Cow position: chr2:31420026-31420600 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 28

Conread position: 187-766
Cow position: chr2:7211811-7212391 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 16

Conread position: 255-523
Cow position: chr2:3296272-3296549 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 199
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 62, 138

Conread position: 257-507
Cow position: chr2:31490328-31490575 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 181
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 122, 32

Conread position: 257-756
Cow position: chr2:3182412-3181928 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 28

Conread position: 261-758
Cow position: chr2:39196681-39196197 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 33

Conread position: 265-766
Cow position: chr2:82828273-82827781 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 20

Conread position: 275-766
Cow position: chr2:7779388-7778889 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 48

Conread position: 286-766
Cow position: chr2:47746343-47746817 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 69

Conread position: 291-641
Cow position: chr2:42286393-42286023 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 204

Conread position: 295-766
Cow position: chr2:14037585-14037126 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 52

Conread position: 334-580
Cow position: chr2:37003463-37003707 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 187
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 85, 49

Conread position: 358-756
Cow position: chr2:13048404-13048795 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 182

Conread position: 366-689
Cow position: chr2:20281682-20282017 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 241
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 54, 32

Conread position: 374-699
Cow position: chr2:1287655-1287983 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 225
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 99, 9

Conread position: 378-716
Cow position: chr2:9242916-9243249 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 224
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 10, 54

Conread position: 378-765
Cow position: chr2:3544386-3544002 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 272
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 11, 63

Conread position: 387-757
Cow position: chr2:4927851-4927487 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 261
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 58, 34

Conread position: 388-755
Cow position: chr2:9043413-9043782 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 267
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 10, 152

Conread position: 416-674
Cow position: chr2:33391523-33391282 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 188
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 71, 0

Conread position: 417-766
Cow position: chr2:4830558-4830237 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 232
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 83, 23

Conread position: 418-764
Cow position: chr2:45470768-45471086 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 244
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 171, 11

Conread position: 418-766
Cow position: chr2:23062664-23062324 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 11

Conread position: 425-703
Cow position: chr2:57501493-57501765 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 199
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 10, 66

Conread position: 426-766
Cow position: chr2:68962832-68962512 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 244
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 46, 71

Conread position: 430-766
Cow position: chr2:62463735-62463393 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 8

Conread position: 439-766
Cow position: chr2:52347499-52347177 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 234
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 63, 99

Conread position: 447-726
Cow position: chr2:80604050-80603768 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 91

Conread position: 447-746
Cow position: chr2:39411924-39412225 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 251

Conread position: 451-768
Cow position: chr2:12777288-12776977 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 43

Conread position: 460-756
Cow position: chr2:15273603-15273301 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 230
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 43, 127

Conread position: 460-761
Cow position: chr2:40370471-40370186 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 12

Conread position: 460-766
Cow position: chr2:7365926-7365626 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 21

Conread position: 465-769
Cow position: chr2:52183252-52183549 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 20

Conread position: 473-766
Cow position: chr2:13684905-13685188 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 65

Conread position: 475-721
Cow position: chr2:44983361-44983112 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 193
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 11, 27

Conread position: 476-766
Cow position: chr2:18759804-18760081 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 208
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 14, 64

Conread position: 477-685
Cow position: chr2:13540788-13540989 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 153
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 47, 92

Conread position: 477-757
Cow position: chr2:69982679-69982945 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 201
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 26, 61

Conread position: 477-766
Cow position: chr2:18274356-18274068 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 54

Conread position: 479-756
Cow position: chr2:11736719-11736988 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 202
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 16, 42

Conread position: 481-719
Cow position: chr2:3730422-3730660 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 186
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 9, 58

Conread position: 483-766
Cow position: chr2:46130616-46130333 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 54

Conread position: 488-766
Cow position: chr2:41417911-41417640 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 216
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 15, 52

Conread position: 492-763
Cow position: chr2:19750658-19750925 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 210
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 83, 25

Conread position: 496-712
Cow position: chr2:38583594-38583373 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 173
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 8, 42

Conread position: 500-769
Cow position: chr2:5767710-5767452 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 25

Conread position: 511-707
Cow position: chr2:18249265-18249075 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 153
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 20, 0

Conread position: 522-769
Cow position: chr2:49441181-49441430 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 190
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 70, 132

Conread position: 530-769
Cow position: chr2:51826806-51826571 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 185
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 6, 48

Conread position: 535-740
Cow position: chr2:47962615-47962419 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 151
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 66, 40

Conread position: 536-756
Cow position: chr2:33823254-33823048 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 168
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 60, 35

Conread position: 536-768
Cow position: chr2:19480713-19480941 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 169
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 65, 43

Conread position: 537-742
Cow position: chr2:19130522-19130722 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 159
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 56, 29

Conread position: 539-756
Cow position: chr2:9709831-9710051 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 165
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 53, 64

Conread position: 540-758
Cow position: chr2:38805983-38805761 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 167
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 52, 198

Conread position: 541-766
Cow position: chr2:56822963-56822735 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 177
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 51, 141

Conread position: 547-773
Cow position: chr2:43000913-43000688 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 171
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 25, 60

Conread position: 564-764
Cow position: chr2:23811505-23811695 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 155
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 28, 99

Conread position: 568-766
Cow position: chr2:53280772-53280980 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 155
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 24, 176

Conread position: 572-766
Cow position: chr2:20534229-20534029 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 153
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 19, 31

Conread position: 575-743
Cow position: chr2:73205032-73204857 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 136
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 16, 165

Conread position: 577-766
Cow position: chr2:25112541-25112730 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 143
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 15, 59

Conread position: 606-766
Cow position: chr2:36213912-36213754 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 125
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 104, 112

Conread position: 609-766
Cow position: chr2:16522042-16522199 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 130
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 11, 127

Conread position: 609-766
Cow position: chr2:59592564-59592406 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 129
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 11, 41

Conread position: 610-758
Cow position: chr2:78912361-78912216 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 118
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 21, 44

Conread position: 610-766
Cow position: chr2:12910632-12910787 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 117
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 123, 0

Conread position: 621-766
Cow position: chr2:71121693-71121837 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 114
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 112, 0

Conread position: 626-773
Cow position: chr2:37155547-37155403 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 116
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 72, 0

Conread position: 649-766
Cow position: chr2:30906351-30906235 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 92
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 84, 0

Show alignments to all cow chromosomes.