Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8022E11.3 |
| Conread position: | 155-418 |
| Cow position: | chr20:20350963-20350702 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 82 |
| Conread position: | 155-523 |
| Cow position: | chr20:16585603-16585228 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 74 |
| Conread position: | 155-535 |
| Cow position: | chr20:17474757-17474361 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 83 |
| Conread position: | 157-390 |
| Cow position: | chr20:32153541-32153771 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 52, 73 |
| Conread position: | 158-331 |
| Cow position: | chr20:27843684-27843854 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 94, 39 |
| Conread position: | 158-428 |
| Cow position: | chr20:7539191-7538924 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 55, 78 |
| Conread position: | 158-463 |
| Cow position: | chr20:23422362-23422057 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 51, 43 |
| Conread position: | 158-622 |
| Cow position: | chr20:4851191-4851662 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 41 |
| Conread position: | 158-641 |
| Cow position: | chr20:27977673-27977186 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 76 |
| Conread position: | 158-663 |
| Cow position: | chr20:25293627-25294132 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 78 |
| Conread position: | 158-698 |
| Cow position: | chr20:24280001-24280535 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 154 |
| Conread position: | 158-698 |
| Cow position: | chr20:35249557-35249012 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 25 |
| Conread position: | 159-757 |
| Cow position: | chr20:2858376-2858971 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 77 |
| Conread position: | 159-768 |
| Cow position: | chr20:22920135-22919515 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 77 |
| Conread position: | 159-774 |
| Cow position: | chr20:31563941-31563329 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 77 |
| Conread position: | 162-381 |
| Cow position: | chr20:12809035-12809257 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 49, 75 |
| Conread position: | 169-353 |
| Cow position: | chr20:4615760-4615576 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 40, 58 |
| Conread position: | 198-767 |
| Cow position: | chr20:13589086-13588511 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 41 |
| Conread position: | 200-384 |
| Cow position: | chr20:21402978-21403162 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 12, 36 |
| Conread position: | 209-758 |
| Cow position: | chr20:14864787-14864236 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 220-765 |
| Cow position: | chr20:15147891-15147354 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 15 |
| Conread position: | 273-406 |
| Cow position: | chr20:28800615-28800482 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 277-639 |
| Cow position: | chr20:36707305-36706943 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 264 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 148, 13 |
| Conread position: | 288-532 |
| Cow position: | chr20:12119453-12119198 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 99, 49 |
| Conread position: | 291-590 |
| Cow position: | chr20:25991923-25991612 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 237 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 88, 230 |
| Conread position: | 292-765 |
| Cow position: | chr20:22420635-22420161 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 48 |
| Conread position: | 315-580 |
| Cow position: | chr20:26992960-26993226 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 222 |
| Conread position: | 333-711 |
| Cow position: | chr20:27844220-27844617 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 105 |
| Conread position: | 393-677 |
| Cow position: | chr20:9918729-9919027 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 214 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 415-754 |
| Cow position: | chr20:3377011-3376676 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 13 |
| Conread position: | 418-765 |
| Cow position: | chr20:21002247-21001910 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 11 |
| Conread position: | 418-767 |
| Cow position: | chr20:5668491-5668134 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 11 |
| Conread position: | 424-725 |
| Cow position: | chr20:21847601-21847317 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 19, 69 |
| Conread position: | 430-766 |
| Cow position: | chr20:33154671-33154339 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 250 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 12, 111 |
| Conread position: | 460-764 |
| Cow position: | chr20:20350450-20350155 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 58 |
| Conread position: | 460-765 |
| Cow position: | chr20:21415326-21415025 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 220 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 41, 78 |
| Conread position: | 461-730 |
| Cow position: | chr20:13790333-13790604 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 198 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 40, 109 |
| Conread position: | 461-746 |
| Cow position: | chr20:31098049-31098329 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 130, 38 |
| Conread position: | 471-640 |
| Cow position: | chr20:28617756-28617591 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 34, 73 |
| Conread position: | 477-766 |
| Cow position: | chr20:23422006-23421722 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 222 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 26, 58 |
| Conread position: | 479-765 |
| Cow position: | chr20:30285722-30286003 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 217 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 20, 59 |
| Conread position: | 491-756 |
| Cow position: | chr20:887284-887558 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 12, 122 |
| Conread position: | 495-725 |
| Cow position: | chr20:7284231-7284456 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 119, 7 |
| Conread position: | 500-766 |
| Cow position: | chr20:21403551-21403814 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 112, 37 |
| Conread position: | 513-766 |
| Cow position: | chr20:23400675-23400915 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 79, 24 |
| Conread position: | 535-727 |
| Cow position: | chr20:20072142-20071942 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 57, 172 |
| Conread position: | 536-769 |
| Cow position: | chr20:36988185-36987949 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 185 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 54, 33 |
| Conread position: | 542-771 |
| Cow position: | chr20:20064240-20064007 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 51, 112 |
| Conread position: | 551-766 |
| Cow position: | chr20:7801704-7801493 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 171 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 39, 59 |
| Conread position: | 551-766 |
| Cow position: | chr20:30243642-30243845 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 551-768 |
| Cow position: | chr20:21301045-21300825 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 9, 82 |
| Conread position: | 563-770 |
| Cow position: | chr20:36373834-36373617 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 22, 180 |
| Conread position: | 568-758 |
| Cow position: | chr20:17473153-17472959 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 12, 89 |
| Conread position: | 568-773 |
| Cow position: | chr20:16582845-16582638 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 26, 63 |
| Conread position: | 605-755 |
| Cow position: | chr20:12118531-12118378 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 76, 131 |
| Conread position: | 621-766 |
| Cow position: | chr20:4851792-4851935 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 622-767 |
| Cow position: | chr20:15492284-15492428 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 86, 80 |
| Conread position: | 626-765 |
| Cow position: | chr20:27976966-27976829 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 84, 60 |
Show alignments to all cow chromosomes.