Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8022E11.3 |
| Conread position: | 149-348 |
| Cow position: | chr22:42978031-42978227 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 11, 66 |
| Conread position: | 158-379 |
| Cow position: | chr22:35143221-35143439 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 52, 72 |
| Conread position: | 158-380 |
| Cow position: | chr22:39303014-39302792 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 53, 78 |
| Conread position: | 158-418 |
| Cow position: | chr22:24335511-24335246 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 200 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 51, 72 |
| Conread position: | 158-459 |
| Cow position: | chr22:42778173-42778461 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 54, 75 |
| Conread position: | 158-483 |
| Cow position: | chr22:45496559-45496892 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 248 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 44, 71 |
| Conread position: | 158-767 |
| Cow position: | chr22:7281201-7281813 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 47 |
| Conread position: | 158-771 |
| Cow position: | chr22:25457829-25458437 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 71 |
| Conread position: | 161-399 |
| Cow position: | chr22:43044182-43043943 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 53, 75 |
| Conread position: | 166-584 |
| Cow position: | chr22:14508592-14508181 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 64 |
| Conread position: | 167-612 |
| Cow position: | chr22:609939-609504 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 312 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 90, 30 |
| Conread position: | 170-523 |
| Cow position: | chr22:45291504-45291867 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 260 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 40, 47 |
| Conread position: | 178-497 |
| Cow position: | chr22:12628489-12628173 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 227 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 32, 60 |
| Conread position: | 188-527 |
| Cow position: | chr22:28755487-28755144 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 243 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 14, 47 |
| Conread position: | 201-584 |
| Cow position: | chr22:15696182-15696578 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 287 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 9, 33 |
| Conread position: | 227-765 |
| Cow position: | chr22:32018578-32018034 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 50 |
| Conread position: | 251-622 |
| Cow position: | chr22:47385897-47385510 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 285 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 128, 152 |
| Conread position: | 275-753 |
| Cow position: | chr22:4057878-4058364 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 108 |
| Conread position: | 341-767 |
| Cow position: | chr22:44637744-44638176 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 148 |
| Conread position: | 358-720 |
| Cow position: | chr22:15873489-15873841 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 254 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 33, 103 |
| Conread position: | 358-756 |
| Cow position: | chr22:29064512-29064910 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 47 |
| Conread position: | 359-616 |
| Cow position: | chr22:39904638-39904387 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 61, 27 |
| Conread position: | 378-754 |
| Cow position: | chr22:13997661-13998023 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 255 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 37, 10 |
| Conread position: | 380-758 |
| Cow position: | chr22:8714076-8714441 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 250 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 43, 160 |
| Conread position: | 380-766 |
| Cow position: | chr22:34649427-34649813 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 266 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 56, 175 |
| Conread position: | 400-726 |
| Cow position: | chr22:5715078-5714769 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 234 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 36, 142 |
| Conread position: | 402-766 |
| Cow position: | chr22:42421516-42421169 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 15 |
| Conread position: | 434-766 |
| Cow position: | chr22:41321561-41321892 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 104 |
| Conread position: | 444-766 |
| Cow position: | chr22:12537321-12536996 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 14 |
| Conread position: | 447-766 |
| Cow position: | chr22:4932160-4932481 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 55, 81 |
| Conread position: | 460-766 |
| Cow position: | chr22:44037465-44037762 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 77 |
| Conread position: | 460-773 |
| Cow position: | chr22:34087245-34086925 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 78 |
| Conread position: | 497-701 |
| Cow position: | chr22:45497031-45497242 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 94, 40 |
| Conread position: | 501-706 |
| Cow position: | chr22:23681049-23681258 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 79, 36 |
| Conread position: | 505-758 |
| Cow position: | chr22:5358649-5358900 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 75, 32 |
| Conread position: | 513-742 |
| Cow position: | chr22:12627941-12627713 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 185 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 85, 24 |
| Conread position: | 521-766 |
| Cow position: | chr22:11749215-11748985 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 69, 5 |
| Conread position: | 527-761 |
| Cow position: | chr22:22010648-22010413 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 183 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 74, 47 |
| Conread position: | 536-756 |
| Cow position: | chr22:18324592-18324369 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 41, 116 |
| Conread position: | 536-766 |
| Cow position: | chr22:13083385-13083602 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 80, 61 |
| Conread position: | 536-769 |
| Cow position: | chr22:39424304-39424534 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 179 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 54, 84 |
| Conread position: | 539-766 |
| Cow position: | chr22:44687298-44687538 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 207 |
| Conread position: | 546-767 |
| Cow position: | chr22:24435992-24435766 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 181 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 50, 27 |
| Conread position: | 547-769 |
| Cow position: | chr22:29004935-29004707 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 172 |
| Conread position: | 580-761 |
| Cow position: | chr22:40046478-40046655 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 612-766 |
| Cow position: | chr22:1533010-1533160 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 626-767 |
| Cow position: | chr22:45788037-45787898 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 35, 93 |
Show alignments to all cow chromosomes.