Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8022E11.3 |
| Conread position: | 155-766 |
| Cow position: | chr23:16170697-16171319 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 50 |
| Conread position: | 158-351 |
| Cow position: | chr23:38026828-38026634 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 88, 9 |
| Conread position: | 158-379 |
| Cow position: | chr23:3715752-3715966 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 53, 79 |
| Conread position: | 158-379 |
| Cow position: | chr23:7955662-7955878 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 77, 47 |
| Conread position: | 158-529 |
| Cow position: | chr23:5265522-5265150 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 78 |
| Conread position: | 158-545 |
| Cow position: | chr23:7253059-7253466 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 44 |
| Conread position: | 158-756 |
| Cow position: | chr23:9546395-9546970 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 52 |
| Conread position: | 158-766 |
| Cow position: | chr23:25079189-25078609 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 45 |
| Conread position: | 159-771 |
| Cow position: | chr23:25408826-25409417 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 15 |
| Conread position: | 161-379 |
| Cow position: | chr23:7751192-7751409 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 49, 73 |
| Conread position: | 166-335 |
| Cow position: | chr23:8737833-8737662 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 44, 70 |
| Conread position: | 166-725 |
| Cow position: | chr23:23285121-23285647 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 70 |
| Conread position: | 168-621 |
| Cow position: | chr23:20216885-20217327 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 320 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 84, 20 |
| Conread position: | 176-379 |
| Cow position: | chr23:15054077-15054282 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 35, 10 |
| Conread position: | 183-414 |
| Cow position: | chr23:15694376-15694601 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 27, 53 |
| Conread position: | 193-378 |
| Cow position: | chr23:29104250-29104062 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 20, 43 |
| Conread position: | 194-340 |
| Cow position: | chr23:23916611-23916760 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 255-535 |
| Cow position: | chr23:30127881-30127586 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 216 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 130, 66 |
| Conread position: | 275-756 |
| Cow position: | chr23:39070113-39069629 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 117 |
| Conread position: | 292-764 |
| Cow position: | chr23:36674645-36674181 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 229 |
| Conread position: | 293-766 |
| Cow position: | chr23:24401082-24400582 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 129 |
| Conread position: | 333-765 |
| Cow position: | chr23:23917038-23917474 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 54 |
| Conread position: | 341-623 |
| Cow position: | chr23:6964170-6963900 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 63, 14 |
| Conread position: | 356-614 |
| Cow position: | chr23:38026497-38026240 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 37, 91 |
| Conread position: | 378-756 |
| Cow position: | chr23:2784175-2783789 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 259 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 20, 146 |
| Conread position: | 430-768 |
| Cow position: | chr23:22605695-22605376 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 73, 61 |
| Conread position: | 438-704 |
| Cow position: | chr23:30302131-30301864 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 10, 50 |
| Conread position: | 447-756 |
| Cow position: | chr23:5258626-5258920 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 228 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 58, 39 |
| Conread position: | 448-758 |
| Cow position: | chr23:16479623-16479311 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 53, 82 |
| Conread position: | 460-726 |
| Cow position: | chr23:9654534-9654276 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 132, 40 |
| Conread position: | 462-780 |
| Cow position: | chr23:15147705-15147395 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 72 |
| Conread position: | 471-766 |
| Cow position: | chr23:39822771-39823063 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 223 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 31, 60 |
| Conread position: | 500-758 |
| Cow position: | chr23:36484087-36483842 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 198 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 92, 37 |
| Conread position: | 501-769 |
| Cow position: | chr23:30691687-30691425 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 212 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 106, 36 |
| Conread position: | 505-763 |
| Cow position: | chr23:34514547-34514293 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 87, 28 |
| Conread position: | 523-710 |
| Cow position: | chr23:15694259-15694063 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 69, 172 |
| Conread position: | 534-758 |
| Cow position: | chr23:2330410-2330192 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 82, 32 |
| Conread position: | 536-726 |
| Cow position: | chr23:7253593-7253776 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 158 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 175, 48 |
| Conread position: | 536-755 |
| Cow position: | chr23:32845651-32845433 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 56, 97 |
| Conread position: | 536-763 |
| Cow position: | chr23:1682438-1682664 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 179 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 55, 27 |
| Conread position: | 537-758 |
| Cow position: | chr23:35654687-35654463 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 53, 30 |
| Conread position: | 540-768 |
| Cow position: | chr23:32549365-32549140 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 50, 112 |
| Conread position: | 544-766 |
| Cow position: | chr23:20023841-20024067 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 63, 141 |
| Conread position: | 547-766 |
| Cow position: | chr23:9425831-9425608 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 190 |
| Conread position: | 549-766 |
| Cow position: | chr23:30127366-30127151 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 42, 129 |
| Conread position: | 552-766 |
| Cow position: | chr23:37036471-37036265 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 40, 82 |
| Conread position: | 564-766 |
| Cow position: | chr23:14572788-14573004 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 567-769 |
| Cow position: | chr23:14751996-14751803 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 25, 40 |
| Conread position: | 571-754 |
| Cow position: | chr23:7571272-7571082 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 21, 96 |
| Conread position: | 601-766 |
| Cow position: | chr23:9724012-9723852 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 606-765 |
| Cow position: | chr23:5265105-5264954 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 610-767 |
| Cow position: | chr23:6963730-6963581 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 662-767 |
| Cow position: | chr23:23058119-23058226 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 91 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 64, 74 |
Show alignments to all cow chromosomes.