Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8022E11.3 |
| Conread position: | 155-750 |
| Cow position: | chr24:17763305-17762710 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 55 |
| Conread position: | 157-739 |
| Cow position: | chr24:25246000-25246580 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 79 |
| Conread position: | 158-379 |
| Cow position: | chr24:26846292-26846072 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 55, 34 |
| Conread position: | 158-402 |
| Cow position: | chr24:6665478-6665232 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 56, 79 |
| Conread position: | 158-507 |
| Cow position: | chr24:43492539-43492195 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 78 |
| Conread position: | 158-530 |
| Cow position: | chr24:7038727-7039102 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 40, 100 |
| Conread position: | 158-622 |
| Cow position: | chr24:19961545-19961087 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 19 |
| Conread position: | 158-764 |
| Cow position: | chr24:41405352-41404760 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 79 |
| Conread position: | 158-766 |
| Cow position: | chr24:42817224-42817838 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 79 |
| Conread position: | 158-779 |
| Cow position: | chr24:43351133-43350503 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 76 |
| Conread position: | 159-392 |
| Cow position: | chr24:19644635-19644866 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 54, 132 |
| Conread position: | 159-416 |
| Cow position: | chr24:36853288-36853550 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 193 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 51, 71 |
| Conread position: | 160-752 |
| Cow position: | chr24:37386379-37385809 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 72 |
| Conread position: | 164-765 |
| Cow position: | chr24:14913575-14913005 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 57 |
| Conread position: | 166-311 |
| Cow position: | chr24:35836272-35836128 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 83, 38 |
| Conread position: | 166-494 |
| Cow position: | chr24:19627302-19627636 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 234 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 45, 62 |
| Conread position: | 168-755 |
| Cow position: | chr24:6177370-6177964 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 68 |
| Conread position: | 171-378 |
| Cow position: | chr24:16476697-16476901 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 42, 66 |
| Conread position: | 197-573 |
| Cow position: | chr24:25343064-25343439 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 273 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 15, 105 |
| Conread position: | 216-683 |
| Cow position: | chr24:38643636-38644117 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 20 |
| Conread position: | 229-766 |
| Cow position: | chr24:6424018-6423499 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 56 |
| Conread position: | 255-766 |
| Cow position: | chr24:31301596-31301104 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 304, 179 |
| Conread position: | 278-766 |
| Cow position: | chr24:35835931-35835462 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 334 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 115, 13 |
| Conread position: | 282-548 |
| Cow position: | chr24:36551266-36550998 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 196 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 157, 70 |
| Conread position: | 291-510 |
| Cow position: | chr24:25934504-25934725 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 129, 92 |
| Conread position: | 298-723 |
| Cow position: | chr24:9867370-9866937 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 299 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 95, 80 |
| Conread position: | 301-485 |
| Cow position: | chr24:1296948-1296758 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 314-758 |
| Cow position: | chr24:32579301-32579740 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 126 |
| Conread position: | 333-772 |
| Cow position: | chr24:17417219-17417668 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 207 |
| Conread position: | 334-632 |
| Cow position: | chr24:15474835-15475130 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 223 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 100, 48 |
| Conread position: | 352-622 |
| Cow position: | chr24:22839454-22839176 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 199 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 8, 14 |
| Conread position: | 386-714 |
| Cow position: | chr24:31845623-31845295 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 225 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 64, 104 |
| Conread position: | 388-763 |
| Cow position: | chr24:30899629-30899251 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 10 |
| Conread position: | 398-724 |
| Cow position: | chr24:30144335-30144648 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 22, 47 |
| Conread position: | 418-766 |
| Cow position: | chr24:36097695-36098043 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 250 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 87, 120 |
| Conread position: | 433-709 |
| Cow position: | chr24:36853602-36853867 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 157, 53 |
| Conread position: | 452-766 |
| Cow position: | chr24:33274123-33274428 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 40 |
| Conread position: | 460-689 |
| Cow position: | chr24:25966887-25967114 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 131, 68 |
| Conread position: | 473-706 |
| Cow position: | chr24:21714915-21714683 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 186 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 26, 65 |
| Conread position: | 474-767 |
| Cow position: | chr24:16552720-16552430 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 109, 51 |
| Conread position: | 481-672 |
| Cow position: | chr24:36098888-36098701 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 24, 57 |
| Conread position: | 489-766 |
| Cow position: | chr24:19627718-19628006 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 29 |
| Conread position: | 505-767 |
| Cow position: | chr24:43491392-43491132 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 40, 35 |
| Conread position: | 507-758 |
| Cow position: | chr24:1295946-1295697 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 31 |
| Conread position: | 510-771 |
| Cow position: | chr24:620882-621146 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 81, 21 |
| Conread position: | 522-767 |
| Cow position: | chr24:24124986-24125225 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 15, 99 |
| Conread position: | 536-766 |
| Cow position: | chr24:38146085-38145867 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 540-761 |
| Cow position: | chr24:23253632-23253407 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 50, 76 |
| Conread position: | 546-766 |
| Cow position: | chr24:25934908-25935144 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 50, 46 |
| Conread position: | 546-766 |
| Cow position: | chr24:44484042-44483826 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 49, 12 |
| Conread position: | 547-767 |
| Cow position: | chr24:3088969-3089203 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 45, 166 |
| Conread position: | 547-769 |
| Cow position: | chr24:28599018-28598796 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 45, 27 |
| Conread position: | 548-780 |
| Cow position: | chr24:42338736-42338974 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 179 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 65, 189 |
| Conread position: | 605-766 |
| Cow position: | chr24:39384533-39384373 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 610-766 |
| Cow position: | chr24:36550646-36550495 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 653-766 |
| Cow position: | chr24:15476623-15476735 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 107, 8 |
Show alignments to all cow chromosomes.