Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8022E11.3 |
| Conread position: | 158-389 |
| Cow position: | chr25:23842244-23842468 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 223, 17 |
| Conread position: | 158-407 |
| Cow position: | chr25:10013446-10013201 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 54, 79 |
| Conread position: | 158-418 |
| Cow position: | chr25:30035535-30035786 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 53, 173 |
| Conread position: | 158-730 |
| Cow position: | chr25:5567778-5567181 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 80 |
| Conread position: | 159-379 |
| Cow position: | chr25:34236590-34236370 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 52, 77 |
| Conread position: | 160-418 |
| Cow position: | chr25:14279252-14279509 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 131 |
| Conread position: | 161-743 |
| Cow position: | chr25:18206311-18205745 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 13 |
| Conread position: | 163-398 |
| Cow position: | chr25:17660249-17660489 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 50, 38 |
| Conread position: | 166-766 |
| Cow position: | chr25:16240602-16240027 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 43 |
| Conread position: | 169-379 |
| Cow position: | chr25:30614138-30614348 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 44, 67 |
| Conread position: | 170-723 |
| Cow position: | chr25:38358092-38358634 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 67 |
| Conread position: | 174-418 |
| Cow position: | chr25:35038637-35038393 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 72, 55 |
| Conread position: | 176-428 |
| Cow position: | chr25:18644071-18643813 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 275-711 |
| Cow position: | chr25:36235712-36235286 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 66 |
| Conread position: | 310-673 |
| Cow position: | chr25:33924839-33925203 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 110, 161 |
| Conread position: | 326-693 |
| Cow position: | chr25:16193379-16193010 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 218 |
| Conread position: | 333-767 |
| Cow position: | chr25:13123372-13123810 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 208 |
| Conread position: | 334-766 |
| Cow position: | chr25:23014320-23014742 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 31 |
| Conread position: | 339-534 |
| Cow position: | chr25:16429815-16429624 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 164, 28 |
| Conread position: | 341-766 |
| Cow position: | chr25:13704174-13704607 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 127 |
| Conread position: | 358-765 |
| Cow position: | chr25:19686567-19686157 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 185 |
| Conread position: | 377-754 |
| Cow position: | chr25:16940657-16940272 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 125 |
| Conread position: | 381-771 |
| Cow position: | chr25:17472872-17473257 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 30 |
| Conread position: | 388-756 |
| Cow position: | chr25:8618193-8617838 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 257 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 16, 20 |
| Conread position: | 448-769 |
| Cow position: | chr25:34159668-34159345 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 55, 111 |
| Conread position: | 451-767 |
| Cow position: | chr25:5377359-5377053 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 87 |
| Conread position: | 454-766 |
| Cow position: | chr25:14279730-14280029 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 63 |
| Conread position: | 460-765 |
| Cow position: | chr25:20180762-20181060 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 221 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 43, 71 |
| Conread position: | 461-690 |
| Cow position: | chr25:30036040-30036271 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 187 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 42, 55 |
| Conread position: | 462-693 |
| Cow position: | chr25:35038156-35037912 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 75, 42 |
| Conread position: | 498-766 |
| Cow position: | chr25:10010223-10009967 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 39 |
| Conread position: | 500-766 |
| Cow position: | chr25:40833103-40832838 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 204 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 71, 27 |
| Conread position: | 530-765 |
| Cow position: | chr25:13216132-13216365 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 62, 43 |
| Conread position: | 531-754 |
| Cow position: | chr25:20497150-20497367 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 65, 61 |
| Conread position: | 536-765 |
| Cow position: | chr25:33346002-33346221 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 175 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 55, 122 |
| Conread position: | 547-761 |
| Cow position: | chr25:20624173-20624392 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 45, 192 |
| Conread position: | 556-757 |
| Cow position: | chr25:9785670-9785461 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 51, 189 |
| Conread position: | 556-766 |
| Cow position: | chr25:16687730-16687516 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 36, 117 |
| Conread position: | 559-765 |
| Cow position: | chr25:8447842-8448046 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 33, 94 |
| Conread position: | 565-766 |
| Cow position: | chr25:15564576-15564777 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 165 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 27, 82 |
| Conread position: | 608-766 |
| Cow position: | chr25:20423308-20423467 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 98, 11 |
| Conread position: | 635-768 |
| Cow position: | chr25:3685712-3685579 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 22, 41 |
Show alignments to all cow chromosomes.