Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8022E11.3 |
| Conread position: | 157-390 |
| Cow position: | chr28:21940183-21940404 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 55, 16 |
| Conread position: | 157-418 |
| Cow position: | chr28:7607228-7607483 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 197 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 97, 78 |
| Conread position: | 157-611 |
| Cow position: | chr28:22855289-22855718 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 320 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 95, 17 |
| Conread position: | 158-338 |
| Cow position: | chr28:26627151-26626969 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 53, 79 |
| Conread position: | 158-352 |
| Cow position: | chr28:13936391-13936594 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 52, 72 |
| Conread position: | 158-378 |
| Cow position: | chr28:20265394-20265616 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 55, 78 |
| Conread position: | 158-379 |
| Cow position: | chr28:34636660-34636878 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 97, 66 |
| Conread position: | 158-381 |
| Cow position: | chr28:16466616-16466834 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 53, 78 |
| Conread position: | 158-417 |
| Cow position: | chr28:6277554-6277295 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 196 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 93, 51 |
| Conread position: | 158-515 |
| Cow position: | chr28:22829918-22830282 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 78 |
| Conread position: | 158-767 |
| Cow position: | chr28:2340530-2341140 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 69 |
| Conread position: | 159-332 |
| Cow position: | chr28:6486589-6486763 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 54, 77 |
| Conread position: | 161-303 |
| Cow position: | chr28:11380044-11379900 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 48, 69 |
| Conread position: | 163-390 |
| Cow position: | chr28:19961865-19962092 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 47, 73 |
| Conread position: | 164-381 |
| Cow position: | chr28:3068921-3069143 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 42, 19 |
| Conread position: | 166-768 |
| Cow position: | chr28:22613921-22614498 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 47 |
| Conread position: | 167-418 |
| Cow position: | chr28:15915248-15914996 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 69 |
| Conread position: | 167-766 |
| Cow position: | chr28:34347248-34346654 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 69 |
| Conread position: | 168-766 |
| Cow position: | chr28:28630576-28631164 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 68 |
| Conread position: | 209-767 |
| Cow position: | chr28:34117134-34117695 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 7 |
| Conread position: | 210-535 |
| Cow position: | chr28:22360681-22361019 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 25 |
| Conread position: | 261-668 |
| Cow position: | chr28:23390430-23390839 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 22 |
| Conread position: | 308-765 |
| Cow position: | chr28:15349605-15350053 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 190 |
| Conread position: | 314-656 |
| Cow position: | chr28:11379660-11379291 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 72, 34 |
| Conread position: | 337-708 |
| Cow position: | chr28:24468205-24468592 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 178 |
| Conread position: | 356-766 |
| Cow position: | chr28:26626978-26626588 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 19 |
| Conread position: | 374-727 |
| Cow position: | chr28:32284789-32284434 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 49, 22 |
| Conread position: | 378-754 |
| Cow position: | chr28:22202045-22202404 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 65, 33 |
| Conread position: | 378-758 |
| Cow position: | chr28:17762558-17762951 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 271 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 11, 116 |
| Conread position: | 406-766 |
| Cow position: | chr28:5912600-5912241 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 115 |
| Conread position: | 418-726 |
| Cow position: | chr28:6355332-6355634 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 32, 24 |
| Conread position: | 418-766 |
| Cow position: | chr28:31994392-31994031 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 20 |
| Conread position: | 428-674 |
| Cow position: | chr28:17482669-17482440 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 13, 7 |
| Conread position: | 440-769 |
| Cow position: | chr28:7799909-7799597 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 61, 46 |
| Conread position: | 460-659 |
| Cow position: | chr28:6277219-6277022 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 43, 71 |
| Conread position: | 460-758 |
| Cow position: | chr28:4803160-4802877 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 216 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 15, 10 |
| Conread position: | 461-758 |
| Cow position: | chr28:10647791-10647495 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 226 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 6, 78 |
| Conread position: | 498-766 |
| Cow position: | chr28:8172909-8172661 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 6, 40 |
| Conread position: | 500-779 |
| Cow position: | chr28:3898382-3898650 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 92, 33 |
| Conread position: | 502-780 |
| Cow position: | chr28:20095215-20095502 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 94, 38 |
| Conread position: | 534-766 |
| Cow position: | chr28:16251889-16251658 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 86 |
| Conread position: | 538-765 |
| Cow position: | chr28:7592569-7592790 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 22, 80 |
| Conread position: | 545-766 |
| Cow position: | chr28:6103091-6103313 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 57, 20 |
| Conread position: | 556-766 |
| Cow position: | chr28:25926709-25926924 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 171 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 34, 167 |
| Conread position: | 568-766 |
| Cow position: | chr28:22361028-22361228 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 24, 95 |
| Conread position: | 605-766 |
| Cow position: | chr28:11284090-11283929 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 116, 130 |
| Conread position: | 612-766 |
| Cow position: | chr28:11379255-11379105 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 624-766 |
| Cow position: | chr28:27890324-27890181 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 628-766 |
| Cow position: | chr28:22339894-22340028 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 16, 10 |
| Conread position: | 631-766 |
| Cow position: | chr28:16241230-16241096 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 113 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 631-766 |
| Cow position: | chr28:22831051-22831185 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 636-766 |
| Cow position: | chr28:12384495-12384624 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 98 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 648-763 |
| Cow position: | chr28:16804785-16804671 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 648-766 |
| Cow position: | chr28:34338241-34338358 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 85, 0 |
Show alignments to all cow chromosomes.