Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8022E11.3 |
| Conread position: | 156-379 |
| Cow position: | chr29:9512860-9513070 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 53, 74 |
| Conread position: | 157-379 |
| Cow position: | chr29:134162-134382 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 68, 96 |
| Conread position: | 157-401 |
| Cow position: | chr29:798411-798165 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 64, 48 |
| Conread position: | 157-756 |
| Cow position: | chr29:21198663-21198041 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 79 |
| Conread position: | 157-766 |
| Cow position: | chr29:18338555-18337954 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 96 |
| Conread position: | 158-379 |
| Cow position: | chr29:13653222-13653430 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 54, 78 |
| Conread position: | 158-414 |
| Cow position: | chr29:17339315-17339062 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 89, 47 |
| Conread position: | 158-442 |
| Cow position: | chr29:30921694-30921410 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 66 |
| Conread position: | 158-529 |
| Cow position: | chr29:28115079-28115453 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 270 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 13, 54 |
| Conread position: | 158-590 |
| Cow position: | chr29:37207750-37208184 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 72 |
| Conread position: | 158-765 |
| Cow position: | chr29:2481351-2480755 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 16 |
| Conread position: | 158-766 |
| Cow position: | chr29:35036722-35037326 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 79 |
| Conread position: | 159-756 |
| Cow position: | chr29:16359608-16360205 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 77 |
| Conread position: | 160-764 |
| Cow position: | chr29:8906519-8907117 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 70 |
| Conread position: | 164-376 |
| Cow position: | chr29:17965956-17966168 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 46, 66 |
| Conread position: | 166-366 |
| Cow position: | chr29:42268691-42268893 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 45, 70 |
| Conread position: | 167-631 |
| Cow position: | chr29:13040537-13040089 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 68 |
| Conread position: | 168-723 |
| Cow position: | chr29:19931332-19931886 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 38 |
| Conread position: | 176-699 |
| Cow position: | chr29:22454817-22454297 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 29 |
| Conread position: | 256-767 |
| Cow position: | chr29:7738610-7738097 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 65 |
| Conread position: | 273-581 |
| Cow position: | chr29:30813544-30813850 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 260 |
| Conread position: | 276-708 |
| Cow position: | chr29:4458699-4459135 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 39 |
| Conread position: | 291-666 |
| Cow position: | chr29:478256-478614 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 265 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 63, 50 |
| Conread position: | 338-766 |
| Cow position: | chr29:3346133-3346554 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 101 |
| Conread position: | 345-681 |
| Cow position: | chr29:42269099-42269450 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 235 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 18, 92 |
| Conread position: | 371-603 |
| Cow position: | chr29:26940165-26940392 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 19, 28 |
| Conread position: | 380-767 |
| Cow position: | chr29:23988701-23989094 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 20 |
| Conread position: | 386-674 |
| Cow position: | chr29:2848205-2847912 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 213 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 7, 11 |
| Conread position: | 386-766 |
| Cow position: | chr29:8891042-8890665 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 106 |
| Conread position: | 404-685 |
| Cow position: | chr29:7959589-7959313 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 16, 47 |
| Conread position: | 418-758 |
| Cow position: | chr29:30921150-30920791 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 15, 337 |
| Conread position: | 444-758 |
| Cow position: | chr29:23823207-23822918 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 215 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 447-766 |
| Cow position: | chr29:34330958-34330630 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 56, 84 |
| Conread position: | 460-766 |
| Cow position: | chr29:794888-795194 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 232 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 43, 79 |
| Conread position: | 493-766 |
| Cow position: | chr29:12193491-12193756 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 17, 45 |
| Conread position: | 496-756 |
| Cow position: | chr29:7892634-7892374 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 43 |
| Conread position: | 511-677 |
| Cow position: | chr29:5174331-5174498 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 81, 18 |
| Conread position: | 536-758 |
| Cow position: | chr29:22655570-22655354 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 56, 30 |
| Conread position: | 536-764 |
| Cow position: | chr29:682167-681948 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 33 |
| Conread position: | 536-765 |
| Cow position: | chr29:34392164-34392401 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 182 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 56, 35 |
| Conread position: | 539-765 |
| Cow position: | chr29:3822898-3823140 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 69, 52 |
| Conread position: | 540-766 |
| Cow position: | chr29:44028164-44028388 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 71, 155 |
| Conread position: | 548-764 |
| Cow position: | chr29:18361309-18361097 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 168 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 38, 23 |
| Conread position: | 549-732 |
| Cow position: | chr29:8685372-8685558 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 43, 69 |
| Conread position: | 550-766 |
| Cow position: | chr29:1711421-1711635 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 61, 19 |
| Conread position: | 552-732 |
| Cow position: | chr29:43962906-43962731 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 64, 15 |
| Conread position: | 555-767 |
| Cow position: | chr29:849459-849679 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 32, 16 |
| Conread position: | 566-756 |
| Cow position: | chr29:30814075-30814266 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 26, 151 |
| Conread position: | 599-768 |
| Cow position: | chr29:40091691-40091522 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 161, 134 |
| Conread position: | 612-758 |
| Cow position: | chr29:38386857-38387001 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 612-761 |
| Cow position: | chr29:13653901-13654046 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 623-766 |
| Cow position: | chr29:38333931-38334075 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 52, 112 |
| Conread position: | 650-766 |
| Cow position: | chr29:42269674-42269790 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 108, 83 |
Show alignments to all cow chromosomes.