Cow genome map

Conread name: Ss1.1-Pig3-SRG8022E11.3

Conread position: 155-501
Cow position: chr4:8597716-8597360 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 82

Conread position: 157-428
Cow position: chr4:52597498-52597215 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 160
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 55, 0

Conread position: 157-535
Cow position: chr4:58833238-58832855 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 72

Conread position: 157-766
Cow position: chr4:34043647-34043014 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 56

Conread position: 158-312
Cow position: chr4:58433238-58433083 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 116
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 51, 72

Conread position: 158-379
Cow position: chr4:3133239-3133456 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 150
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 52, 76

Conread position: 158-379
Cow position: chr4:9649985-9650208 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 151
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 52, 45

Conread position: 158-463
Cow position: chr4:32749180-32749513 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 244
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 54, 78

Conread position: 158-667
Cow position: chr4:14564936-14564435 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 79

Conread position: 158-756
Cow position: chr4:49741528-49742134 (view UCSC Genome Browser custom track)
Alignm length: 636
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 51

Conread position: 158-766
Cow position: chr4:39646654-39647241 (view UCSC Genome Browser custom track)
Alignm length: 624
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 47

Conread position: 159-340
Cow position: chr4:5623219-5623039 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 141
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 50, 71

Conread position: 159-411
Cow position: chr4:57652221-57652471 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 78

Conread position: 159-419
Cow position: chr4:45114623-45114371 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 184
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 95, 54

Conread position: 159-510
Cow position: chr4:31586844-31586487 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 74

Conread position: 159-528
Cow position: chr4:29222542-29222164 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 60

Conread position: 159-732
Cow position: chr4:47511003-47511582 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 77

Conread position: 159-767
Cow position: chr4:9822129-9822734 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 77

Conread position: 159-769
Cow position: chr4:41975735-41975134 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 77

Conread position: 160-378
Cow position: chr4:61171888-61172102 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 150
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 53, 43

Conread position: 160-766
Cow position: chr4:5189029-5188422 (view UCSC Genome Browser custom track)
Alignm length: 625
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 33

Conread position: 161-417
Cow position: chr4:41895634-41895889 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 171
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 56, 11

Conread position: 161-535
Cow position: chr4:17176132-17176504 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 52

Conread position: 161-754
Cow position: chr4:29067660-29067080 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 21

Conread position: 163-378
Cow position: chr4:53763139-53762921 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 160
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 47, 73

Conread position: 166-385
Cow position: chr4:6630302-6630087 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 167
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 45, 39

Conread position: 179-335
Cow position: chr4:57566486-57566330 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 119
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 34, 57

Conread position: 179-686
Cow position: chr4:20925981-20925509 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 57

Conread position: 187-396
Cow position: chr4:5777044-5776839 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 147
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 26, 49

Conread position: 191-371
Cow position: chr4:58856740-58856560 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 126
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 66, 44

Conread position: 200-626
Cow position: chr4:59565556-59565993 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 35

Conread position: 209-528
Cow position: chr4:4300561-4300890 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 241
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 45, 26

Conread position: 212-765
Cow position: chr4:53641356-53641896 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 23

Conread position: 240-766
Cow position: chr4:57222159-57221631 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 6

Conread position: 256-535
Cow position: chr4:27443911-27444201 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 0

Conread position: 262-761
Cow position: chr4:60159627-60159132 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 338
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 72, 42

Conread position: 275-495
Cow position: chr4:51905262-51905481 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 166
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 119, 164

Conread position: 276-620
Cow position: chr4:6793459-6793801 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 252
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 109, 47

Conread position: 276-696
Cow position: chr4:46875425-46874985 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 132

Conread position: 330-766
Cow position: chr4:57566061-57565637 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 92

Conread position: 333-666
Cow position: chr4:2238087-2237750 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 251
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 52, 103

Conread position: 338-723
Cow position: chr4:21162796-21163193 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 217

Conread position: 343-754
Cow position: chr4:60662565-60662968 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 291
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 39, 185

Conread position: 345-767
Cow position: chr4:58432803-58432379 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 149

Conread position: 346-754
Cow position: chr4:60640041-60639641 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 288
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 36, 182

Conread position: 388-641
Cow position: chr4:45113064-45112822 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 182
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 29, 12

Conread position: 388-756
Cow position: chr4:58873462-58873817 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 259
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 30, 52

Conread position: 400-616
Cow position: chr4:22891906-22891694 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 159
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 127, 19

Conread position: 409-603
Cow position: chr4:13926430-13926240 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 141
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 90, 55

Conread position: 417-767
Cow position: chr4:5783969-5784300 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 119

Conread position: 418-714
Cow position: chr4:68107118-68106829 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 219
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 86, 10

Conread position: 418-766
Cow position: chr4:36759509-36759871 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 125

Conread position: 422-756
Cow position: chr4:58856265-58855942 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 242
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 77, 9

Conread position: 428-665
Cow position: chr4:24713407-24713166 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 192
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 74, 19

Conread position: 431-758
Cow position: chr4:15046119-15046460 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 85

Conread position: 431-758
Cow position: chr4:20311926-20312245 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 224
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 68, 97

Conread position: 438-657
Cow position: chr4:27228723-27228951 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 167
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 64, 54

Conread position: 439-748
Cow position: chr4:22507120-22506817 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 99

Conread position: 442-766
Cow position: chr4:2443629-2443311 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 22

Conread position: 447-758
Cow position: chr4:34572261-34571952 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 231
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 55, 17

Conread position: 460-733
Cow position: chr4:15283467-15283733 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 199
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 43, 79

Conread position: 461-715
Cow position: chr4:47087129-47086880 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 186
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 16, 78

Conread position: 461-766
Cow position: chr4:31003075-31002770 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 70

Conread position: 461-766
Cow position: chr4:57652493-57652802 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 76

Conread position: 468-765
Cow position: chr4:49881720-49881409 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 238
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 36, 235

Conread position: 474-766
Cow position: chr4:6630024-6629745 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 220
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 30, 18

Conread position: 477-780
Cow position: chr4:25924661-25924362 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 61

Conread position: 479-744
Cow position: chr4:7655072-7655337 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 190
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 23, 46

Conread position: 479-752
Cow position: chr4:32140968-32140704 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 211
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 25, 48

Conread position: 483-679
Cow position: chr4:51905574-51905773 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 160
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 21, 55

Conread position: 492-703
Cow position: chr4:62407473-62407678 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 158
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 12, 46

Conread position: 497-758
Cow position: chr4:31586280-31586028 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 198
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 106, 40

Conread position: 497-765
Cow position: chr4:5886658-5886919 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 40

Conread position: 503-713
Cow position: chr4:54347527-54347738 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 166
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 104, 33

Conread position: 508-717
Cow position: chr4:9089751-9089540 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 158
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 68, 31

Conread position: 511-762
Cow position: chr4:4519485-4519730 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 179
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 83, 23

Conread position: 536-684
Cow position: chr4:63875730-63875584 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 115
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 53, 64

Conread position: 536-766
Cow position: chr4:45401009-45401233 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 164
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 39, 0

Conread position: 536-766
Cow position: chr4:52697229-52697454 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 172
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 56, 19

Conread position: 538-724
Cow position: chr4:4192555-4192741 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 147
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 68, 12

Conread position: 540-732
Cow position: chr4:27444403-27444603 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 150
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 50, 150

Conread position: 540-766
Cow position: chr4:58830505-58830292 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 171
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 52, 10

Conread position: 545-766
Cow position: chr4:59809589-59809372 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 172
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 45, 120

Conread position: 547-742
Cow position: chr4:4029191-4029392 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 157
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 62, 193

Conread position: 559-762
Cow position: chr4:52597181-52596967 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 166
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 33, 186

Conread position: 608-758
Cow position: chr4:23536416-23536564 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 112
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 37, 0

Conread position: 608-769
Cow position: chr4:22891669-22891512 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 118
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 11, 0

Conread position: 610-754
Cow position: chr4:6793918-6794058 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 119
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 7, 0

Conread position: 629-748
Cow position: chr4:17177975-17178093 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 94
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 104, 0

Show alignments to all cow chromosomes.