Cow genome map

Conread name: Ss1.1-Pig3-SRG8022E11.3

Conread position: 154-379
Cow position: chr6:1095334-1095111 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 167
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 60, 5

Conread position: 157-320
Cow position: chr6:3374538-3374379 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 122
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 95, 54

Conread position: 157-375
Cow position: chr6:20332457-20332240 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 164
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 30, 79

Conread position: 157-771
Cow position: chr6:45617406-45616798 (view UCSC Genome Browser custom track)
Alignm length: 628
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 79

Conread position: 158-350
Cow position: chr6:38899744-38899551 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 140
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 52, 72

Conread position: 158-372
Cow position: chr6:32428265-32428476 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 160
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 55, 66

Conread position: 158-378
Cow position: chr6:7998043-7998264 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 151
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 55, 80

Conread position: 158-390
Cow position: chr6:51071736-51071969 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 169
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 55, 94

Conread position: 158-726
Cow position: chr6:44377300-44377866 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 21

Conread position: 158-758
Cow position: chr6:11159975-11159369 (view UCSC Genome Browser custom track)
Alignm length: 626
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 78

Conread position: 158-766
Cow position: chr6:29077762-29078361 (view UCSC Genome Browser custom track)
Alignm length: 631
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 79

Conread position: 158-767
Cow position: chr6:23891585-23892187 (view UCSC Genome Browser custom track)
Alignm length: 620
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 78

Conread position: 158-767
Cow position: chr6:41557497-41558117 (view UCSC Genome Browser custom track)
Alignm length: 631
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 79

Conread position: 158-769
Cow position: chr6:31688158-31687555 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 260

Conread position: 158-776
Cow position: chr6:3017478-3018114 (view UCSC Genome Browser custom track)
Alignm length: 662
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 78

Conread position: 158-777
Cow position: chr6:62754458-62753855 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 16

Conread position: 159-404
Cow position: chr6:29803830-29804075 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 172
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 90, 76

Conread position: 159-725
Cow position: chr6:39917198-39917759 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 77

Conread position: 161-520
Cow position: chr6:4666765-4666397 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 198

Conread position: 161-779
Cow position: chr6:45692628-45692019 (view UCSC Genome Browser custom track)
Alignm length: 628
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 89

Conread position: 166-335
Cow position: chr6:57686187-57686356 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 125
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 46, 58

Conread position: 166-767
Cow position: chr6:58594067-58593511 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 68

Conread position: 167-379
Cow position: chr6:16337708-16337494 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 149
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 14, 122

Conread position: 168-418
Cow position: chr6:12519536-12519780 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 175
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 44, 69

Conread position: 171-595
Cow position: chr6:69274748-69274318 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 63

Conread position: 181-582
Cow position: chr6:6244855-6244472 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 280
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 62, 54

Conread position: 183-407
Cow position: chr6:27710702-27710921 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 162
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 27, 7

Conread position: 209-756
Cow position: chr6:6635224-6635764 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 23

Conread position: 218-732
Cow position: chr6:23932874-23932398 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 17

Conread position: 221-370
Cow position: chr6:20172348-20172499 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 120
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 9, 69

Conread position: 251-515
Cow position: chr6:19459163-19459436 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 190
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 141, 59

Conread position: 256-720
Cow position: chr6:41157357-41157809 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 26

Conread position: 269-411
Cow position: chr6:66388204-66388055 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 115
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 109, 0

Conread position: 273-774
Cow position: chr6:5678900-5678397 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 113

Conread position: 277-667
Cow position: chr6:29082912-29082550 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 266
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 17, 5

Conread position: 308-686
Cow position: chr6:3374268-3373862 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 245

Conread position: 365-758
Cow position: chr6:66676945-66677358 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 276
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 34, 182

Conread position: 366-766
Cow position: chr6:32428677-32429052 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 12

Conread position: 380-749
Cow position: chr6:66840109-66840484 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 260
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 40, 158

Conread position: 380-769
Cow position: chr6:53416712-53416318 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 59

Conread position: 383-766
Cow position: chr6:6722393-6722776 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 283
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 36, 95

Conread position: 384-736
Cow position: chr6:55661989-55662339 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 256
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 19, 30

Conread position: 387-758
Cow position: chr6:29299808-29300167 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 265
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 35, 64

Conread position: 391-603
Cow position: chr6:39798730-39798515 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 150
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 34, 44

Conread position: 418-750
Cow position: chr6:26692841-26692510 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 236
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 84, 120

Conread position: 422-667
Cow position: chr6:55743360-55743593 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 172
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 168, 67

Conread position: 424-680
Cow position: chr6:812115-811852 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 195
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 18, 109

Conread position: 425-766
Cow position: chr6:20332604-20332941 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 94

Conread position: 430-766
Cow position: chr6:35698120-35697783 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 37

Conread position: 432-756
Cow position: chr6:55659682-55659368 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 221
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 67, 7

Conread position: 440-753
Cow position: chr6:23648613-23648305 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 220
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 46, 93

Conread position: 441-766
Cow position: chr6:1077112-1076789 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 243
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 62, 35

Conread position: 447-729
Cow position: chr6:35831862-35832151 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 23

Conread position: 447-756
Cow position: chr6:44389932-44389625 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 91

Conread position: 452-672
Cow position: chr6:22098342-22098129 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 161
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 50, 67

Conread position: 460-769
Cow position: chr6:14279985-14280297 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 57

Conread position: 461-721
Cow position: chr6:5500729-5500473 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 193
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 140, 21

Conread position: 473-751
Cow position: chr6:34556855-34557128 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 214
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 119, 9

Conread position: 475-690
Cow position: chr6:33311452-33311664 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 162
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 28, 57

Conread position: 487-750
Cow position: chr6:55398145-55398414 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 207
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 16, 90

Conread position: 488-719
Cow position: chr6:39293531-39293755 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 169
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 16, 50

Conread position: 492-758
Cow position: chr6:54295988-54296236 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 186
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 11, 46

Conread position: 494-732
Cow position: chr6:37085258-37085493 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 193
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 5, 35

Conread position: 498-766
Cow position: chr6:40241053-40241315 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 210
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 7, 41

Conread position: 500-768
Cow position: chr6:62327913-62328174 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 192
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 81, 29

Conread position: 502-769
Cow position: chr6:20748749-20749021 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 195
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 43, 68

Conread position: 509-767
Cow position: chr6:4666120-4665873 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 194
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 106, 22

Conread position: 510-766
Cow position: chr6:35126726-35126480 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 22

Conread position: 527-769
Cow position: chr6:19715850-19715608 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 181
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 65, 19

Conread position: 536-753
Cow position: chr6:43596146-43595924 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 161
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 54, 203

Conread position: 536-763
Cow position: chr6:5516931-5516715 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 161
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 152, 56

Conread position: 536-765
Cow position: chr6:27711030-27711265 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 178
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 56, 178

Conread position: 538-770
Cow position: chr6:24496527-24496291 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 172
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 64, 199

Conread position: 539-766
Cow position: chr6:14162209-14161985 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 169
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 68, 32

Conread position: 540-766
Cow position: chr6:50502001-50502225 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 67

Conread position: 547-766
Cow position: chr6:1940086-1939855 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 174
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 45, 162

Conread position: 549-763
Cow position: chr6:44771248-44771452 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 163
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 43, 10

Conread position: 550-766
Cow position: chr6:15261001-15261221 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 164
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 25, 16

Conread position: 550-766
Cow position: chr6:15262046-15262266 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 164
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 25, 16

Conread position: 589-770
Cow position: chr6:3936165-3935988 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 142
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 12, 0

Conread position: 610-766
Cow position: chr6:24260329-24260175 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 120
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 117, 0

Conread position: 611-767
Cow position: chr6:35266009-35265861 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 119
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 53, 0

Conread position: 614-766
Cow position: chr6:16495129-16494977 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 118
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 116, 70

Conread position: 617-764
Cow position: chr6:13092589-13092443 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 119
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 116, 0

Conread position: 621-754
Cow position: chr6:28008965-28008833 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 108
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 112, 0

Conread position: 627-775
Cow position: chr6:24337576-24337427 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 119
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 133, 106

Conread position: 632-766
Cow position: chr6:30287046-30287179 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 103
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 99, 0

Show alignments to all cow chromosomes.