Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8022E11.3 |
| Conread position: | 156-727 |
| Cow position: | chr7:42222409-42221825 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 72 |
| Conread position: | 157-379 |
| Cow position: | chr7:25223619-25223839 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 56, 73 |
| Conread position: | 157-668 |
| Cow position: | chr7:65953372-65952857 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 66 |
| Conread position: | 158-350 |
| Cow position: | chr7:1608555-1608357 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 158-367 |
| Cow position: | chr7:35171551-35171332 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 158-379 |
| Cow position: | chr7:37024858-37025079 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 56, 78 |
| Conread position: | 158-380 |
| Cow position: | chr7:35754492-35754713 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 54, 24 |
| Conread position: | 158-381 |
| Cow position: | chr7:61754622-61754841 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 177 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 52, 39 |
| Conread position: | 158-393 |
| Cow position: | chr7:11187248-11187485 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 181 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 61, 78 |
| Conread position: | 158-411 |
| Cow position: | chr7:63547990-63547739 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 54, 10 |
| Conread position: | 158-419 |
| Cow position: | chr7:34670144-34670419 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 158-510 |
| Cow position: | chr7:1398254-1397899 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 78 |
| Conread position: | 158-756 |
| Cow position: | chr7:20104991-20104382 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 78 |
| Conread position: | 158-757 |
| Cow position: | chr7:61425580-61426200 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 78 |
| Conread position: | 158-766 |
| Cow position: | chr7:11593175-11592597 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 47 |
| Conread position: | 158-766 |
| Cow position: | chr7:29378116-29377519 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 79 |
| Conread position: | 158-766 |
| Cow position: | chr7:43004406-43005020 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 14 |
| Conread position: | 158-766 |
| Cow position: | chr7:62516039-62516641 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 78 |
| Conread position: | 158-767 |
| Cow position: | chr7:48335442-48334867 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 78 |
| Conread position: | 158-767 |
| Cow position: | chr7:67498733-67499329 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 285, 49 |
| Conread position: | 159-391 |
| Cow position: | chr7:52130540-52130773 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 53, 77 |
| Conread position: | 159-590 |
| Cow position: | chr7:27709633-27709190 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 53 |
| Conread position: | 159-766 |
| Cow position: | chr7:20289245-20288627 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 282 |
| Conread position: | 160-499 |
| Cow position: | chr7:65849038-65848696 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 225 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 10, 51 |
| Conread position: | 161-379 |
| Cow position: | chr7:28671988-28671772 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 41, 75 |
| Conread position: | 161-703 |
| Cow position: | chr7:13822816-13823360 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 60 |
| Conread position: | 175-718 |
| Cow position: | chr7:39512544-39512025 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 30 |
| Conread position: | 184-701 |
| Cow position: | chr7:63328130-63328664 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 156 |
| Conread position: | 187-418 |
| Cow position: | chr7:27763040-27763271 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 193, 50 |
| Conread position: | 248-478 |
| Cow position: | chr7:2967251-2967490 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 172, 38 |
| Conread position: | 251-379 |
| Cow position: | chr7:23446802-23446674 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 270-767 |
| Cow position: | chr7:62048536-62049046 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 190 |
| Conread position: | 281-535 |
| Cow position: | chr7:64366710-64366962 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 191 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 160, 108 |
| Conread position: | 296-764 |
| Cow position: | chr7:56664234-56664686 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 120 |
| Conread position: | 297-725 |
| Cow position: | chr7:5701086-5701520 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 86 |
| Conread position: | 313-748 |
| Cow position: | chr7:45064238-45063801 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 165 |
| Conread position: | 333-565 |
| Cow position: | chr7:28560850-28560620 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 70, 50 |
| Conread position: | 356-603 |
| Cow position: | chr7:59164120-59164368 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 29, 11 |
| Conread position: | 363-766 |
| Cow position: | chr7:12920395-12920014 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 290 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 188, 19 |
| Conread position: | 379-754 |
| Cow position: | chr7:5247692-5247315 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 255 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 61, 163 |
| Conread position: | 385-758 |
| Cow position: | chr7:68246562-68246932 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 255 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 39, 151 |
| Conread position: | 386-768 |
| Cow position: | chr7:5448051-5447685 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 274 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 36, 152 |
| Conread position: | 386-769 |
| Cow position: | chr7:5435633-5435269 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 272 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 36, 152 |
| Conread position: | 388-754 |
| Cow position: | chr7:45099483-45099855 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 260 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 32, 98 |
| Conread position: | 400-755 |
| Cow position: | chr7:59844724-59845077 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 45 |
| Conread position: | 418-764 |
| Cow position: | chr7:45722018-45722350 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 244 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 42, 18 |
| Conread position: | 419-742 |
| Cow position: | chr7:33339433-33339730 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 432-673 |
| Cow position: | chr7:43231053-43231288 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 168 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 71, 100 |
| Conread position: | 444-642 |
| Cow position: | chr7:31442037-31441834 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 59, 101 |
| Conread position: | 460-754 |
| Cow position: | chr7:42555356-42555631 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 460-769 |
| Cow position: | chr7:46216380-46216686 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 35 |
| Conread position: | 477-758 |
| Cow position: | chr7:59204617-59204911 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 220 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 6, 60 |
| Conread position: | 478-703 |
| Cow position: | chr7:6533011-6532789 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 43, 50 |
| Conread position: | 487-636 |
| Cow position: | chr7:65519780-65519632 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 41, 13 |
| Conread position: | 487-758 |
| Cow position: | chr7:68366893-68366614 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 15, 62 |
| Conread position: | 488-757 |
| Cow position: | chr7:56356713-56356448 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 113, 31 |
| Conread position: | 500-758 |
| Cow position: | chr7:24883640-24883387 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 36 |
| Conread position: | 500-768 |
| Cow position: | chr7:40023080-40023318 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 501-765 |
| Cow position: | chr7:16738808-16739059 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 111, 36 |
| Conread position: | 501-766 |
| Cow position: | chr7:40622555-40622812 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 96, 34 |
| Conread position: | 526-769 |
| Cow position: | chr7:28010294-28010052 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 66, 21 |
| Conread position: | 532-739 |
| Cow position: | chr7:40615912-40616099 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 7, 16 |
| Conread position: | 536-720 |
| Cow position: | chr7:30027540-30027732 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 56, 30 |
| Conread position: | 536-758 |
| Cow position: | chr7:6006779-6006561 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 49, 63 |
| Conread position: | 539-756 |
| Cow position: | chr7:63547372-63547169 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 53, 31 |
| Conread position: | 542-757 |
| Cow position: | chr7:32589214-32589438 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 48, 24 |
| Conread position: | 544-774 |
| Cow position: | chr7:54060433-54060189 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 48, 59 |
| Conread position: | 552-748 |
| Cow position: | chr7:239095-238901 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 141, 78 |
| Conread position: | 568-727 |
| Cow position: | chr7:64367125-64367294 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 24, 134 |
| Conread position: | 573-769 |
| Cow position: | chr7:43257631-43257831 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 40, 155 |
| Conread position: | 588-757 |
| Cow position: | chr7:185338-185509 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 19, 148 |
| Conread position: | 608-765 |
| Cow position: | chr7:8893568-8893412 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 134 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 609-765 |
| Cow position: | chr7:48413592-48413438 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 609-766 |
| Cow position: | chr7:23612506-23612352 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 91, 10 |
| Conread position: | 610-766 |
| Cow position: | chr7:27765738-27765885 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 612-766 |
| Cow position: | chr7:40643480-40643632 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 618-766 |
| Cow position: | chr7:65519625-65519478 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 619-753 |
| Cow position: | chr7:53356219-53356089 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 631-769 |
| Cow position: | chr7:31441617-31441483 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 131, 14 |
Show alignments to all cow chromosomes.