Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8022E11.3 |
| Conread position: | 155-766 |
| Cow position: | chr8:51877938-51877349 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 56 |
| Conread position: | 157-536 |
| Cow position: | chr8:11792189-11792591 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 266 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 30, 308 |
| Conread position: | 158-342 |
| Cow position: | chr8:12790841-12790663 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 89, 31 |
| Conread position: | 158-379 |
| Cow position: | chr8:44857460-44857686 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 18, 79 |
| Conread position: | 158-388 |
| Cow position: | chr8:9985590-9985810 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 53, 95 |
| Conread position: | 158-402 |
| Cow position: | chr8:59137899-59137662 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 53, 34 |
| Conread position: | 158-418 |
| Cow position: | chr8:8480943-8480686 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 48, 56 |
| Conread position: | 158-433 |
| Cow position: | chr8:21119276-21119001 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 96 |
| Conread position: | 158-478 |
| Cow position: | chr8:31886741-31887041 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 52, 72 |
| Conread position: | 158-730 |
| Cow position: | chr8:23441136-23440541 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 78 |
| Conread position: | 158-732 |
| Cow position: | chr8:48682497-48681919 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 14 |
| Conread position: | 158-743 |
| Cow position: | chr8:30021917-30021346 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 32 |
| Conread position: | 158-754 |
| Cow position: | chr8:33437788-33438388 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 79 |
| Conread position: | 158-766 |
| Cow position: | chr8:2974648-2975273 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 71 |
| Conread position: | 158-768 |
| Cow position: | chr8:54158729-54159346 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 78 |
| Conread position: | 159-304 |
| Cow position: | chr8:24517446-24517300 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 83, 70 |
| Conread position: | 159-335 |
| Cow position: | chr8:41951600-41951774 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 90, 48 |
| Conread position: | 159-536 |
| Cow position: | chr8:32719973-32720318 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 273 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 83, 47 |
| Conread position: | 159-722 |
| Cow position: | chr8:19369487-19368954 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 27 |
| Conread position: | 159-766 |
| Cow position: | chr8:45686434-45685871 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 78 |
| Conread position: | 160-557 |
| Cow position: | chr8:21078539-21078927 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 74 |
| Conread position: | 160-766 |
| Cow position: | chr8:40432863-40432264 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 17 |
| Conread position: | 161-757 |
| Cow position: | chr8:22103197-22102594 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 75 |
| Conread position: | 170-482 |
| Cow position: | chr8:27369096-27369411 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 225 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 42, 66 |
| Conread position: | 171-766 |
| Cow position: | chr8:19772507-19773075 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 65 |
| Conread position: | 176-730 |
| Cow position: | chr8:4337056-4336491 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 60 |
| Conread position: | 232-766 |
| Cow position: | chr8:7104347-7103811 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 106 |
| Conread position: | 277-758 |
| Cow position: | chr8:5874269-5874749 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 104 |
| Conread position: | 293-634 |
| Cow position: | chr8:952164-952498 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 71, 109 |
| Conread position: | 293-766 |
| Cow position: | chr8:40273510-40273041 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 91 |
| Conread position: | 293-769 |
| Cow position: | chr8:18725343-18725814 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 63 |
| Conread position: | 300-766 |
| Cow position: | chr8:20341571-20341084 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 43 |
| Conread position: | 308-646 |
| Cow position: | chr8:7126224-7125890 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 69, 120 |
| Conread position: | 338-724 |
| Cow position: | chr8:53891690-53892095 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 151 |
| Conread position: | 363-686 |
| Cow position: | chr8:54828437-54828765 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 241 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 55, 136 |
| Conread position: | 384-766 |
| Cow position: | chr8:51443337-51442977 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 268 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 62, 50 |
| Conread position: | 388-710 |
| Cow position: | chr8:42151770-42151457 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 234 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 49, 102 |
| Conread position: | 391-670 |
| Cow position: | chr8:18810651-18810941 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 206 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 29, 146 |
| Conread position: | 400-763 |
| Cow position: | chr8:37381380-37381726 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 257 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 33, 60 |
| Conread position: | 416-756 |
| Cow position: | chr8:14617637-14617303 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 19 |
| Conread position: | 422-742 |
| Cow position: | chr8:53359702-53359376 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 236 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 20, 119 |
| Conread position: | 424-761 |
| Cow position: | chr8:18883089-18883427 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 7 |
| Conread position: | 431-765 |
| Cow position: | chr8:34439732-34440063 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 26 |
| Conread position: | 447-758 |
| Cow position: | chr8:33818947-33818643 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 229 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 52, 84 |
| Conread position: | 447-766 |
| Cow position: | chr8:8480369-8480044 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 22 |
| Conread position: | 448-766 |
| Cow position: | chr8:18801524-18801836 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 90 |
| Conread position: | 448-766 |
| Cow position: | chr8:28387487-28387185 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 44 |
| Conread position: | 460-766 |
| Cow position: | chr8:6763981-6763680 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 65 |
| Conread position: | 463-766 |
| Cow position: | chr8:6507979-6507670 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 108 |
| Conread position: | 473-721 |
| Cow position: | chr8:37193277-37193530 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 30, 100 |
| Conread position: | 477-754 |
| Cow position: | chr8:9672193-9672472 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 206 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 26, 60 |
| Conread position: | 487-750 |
| Cow position: | chr8:57404368-57404644 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 201 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 15, 22 |
| Conread position: | 492-756 |
| Cow position: | chr8:19793385-19793127 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 11, 39 |
| Conread position: | 496-766 |
| Cow position: | chr8:49406387-49406130 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 14, 7 |
| Conread position: | 498-766 |
| Cow position: | chr8:10167175-10167429 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 40 |
| Conread position: | 501-775 |
| Cow position: | chr8:31887983-31888244 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 264, 36 |
| Conread position: | 534-765 |
| Cow position: | chr8:26041013-26040794 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 58, 32 |
| Conread position: | 535-766 |
| Cow position: | chr8:28049160-28048944 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 225, 39 |
| Conread position: | 536-696 |
| Cow position: | chr8:6959656-6959500 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 75, 97 |
| Conread position: | 536-766 |
| Cow position: | chr8:11794560-11794781 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 181 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 61, 56 |
| Conread position: | 538-758 |
| Cow position: | chr8:1168076-1167859 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 52, 62 |
| Conread position: | 544-774 |
| Cow position: | chr8:19305427-19305652 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 182 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 82, 48 |
| Conread position: | 552-766 |
| Cow position: | chr8:31185621-31185838 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 25, 138 |
| Conread position: | 556-764 |
| Cow position: | chr8:32720318-32720511 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 559-755 |
| Cow position: | chr8:15822028-15822221 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 151, 55 |
| Conread position: | 561-765 |
| Cow position: | chr8:36685649-36685859 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 10, 179 |
| Conread position: | 564-767 |
| Cow position: | chr8:32960200-32960000 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 159 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 570-725 |
| Cow position: | chr8:7102487-7102649 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 22, 105 |
| Conread position: | 571-758 |
| Cow position: | chr8:32327297-32327490 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 37, 30 |
| Conread position: | 610-766 |
| Cow position: | chr8:9986241-9986396 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 610-767 |
| Cow position: | chr8:14703109-14702956 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 150, 16 |
| Conread position: | 614-765 |
| Cow position: | chr8:21900125-21900271 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 626-757 |
| Cow position: | chr8:40570584-40570455 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 649-768 |
| Cow position: | chr8:7125575-7125458 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 659-758 |
| Cow position: | chr8:32789789-32789691 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 84 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 74, 0 |
Show alignments to all cow chromosomes.