Cow genome map
Conread name: | Ss1.1-Pig3-SRG8022E11.3 |
Conread position: | 157-766 |
Cow position: | chr9:41317931-41318555 (view UCSC Genome Browser custom track) |
Alignm length: | 638 |
Alignm identity: | 461 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 53, 80 |
Conread position: | 158-379 |
Cow position: | chr9:5485907-5485690 (view UCSC Genome Browser custom track) |
Alignm length: | 223 |
Alignm identity: | 157 |
Alignm E-value: | 3e-28 |
Alignm gaps (pig, cow): | 98, 54 |
Conread position: | 158-379 |
Cow position: | chr9:13845779-13845567 (view UCSC Genome Browser custom track) |
Alignm length: | 225 |
Alignm identity: | 160 |
Alignm E-value: | 7e-25 |
Alignm gaps (pig, cow): | 54, 24 |
Conread position: | 158-379 |
Cow position: | chr9:22976817-22977036 (view UCSC Genome Browser custom track) |
Alignm length: | 224 |
Alignm identity: | 168 |
Alignm E-value: | 1e-39 |
Alignm gaps (pig, cow): | 85, 71 |
Conread position: | 158-413 |
Cow position: | chr9:55651075-55650820 (view UCSC Genome Browser custom track) |
Alignm length: | 260 |
Alignm identity: | 176 |
Alignm E-value: | 3e-27 |
Alignm gaps (pig, cow): | 91, 24 |
Conread position: | 158-417 |
Cow position: | chr9:12182010-12181750 (view UCSC Genome Browser custom track) |
Alignm length: | 265 |
Alignm identity: | 188 |
Alignm E-value: | 2e-36 |
Alignm gaps (pig, cow): | 54, 97 |
Conread position: | 158-418 |
Cow position: | chr9:10761308-10761558 (view UCSC Genome Browser custom track) |
Alignm length: | 264 |
Alignm identity: | 190 |
Alignm E-value: | 6e-34 |
Alignm gaps (pig, cow): | 52, 28 |
Conread position: | 158-418 |
Cow position: | chr9:59114418-59114153 (view UCSC Genome Browser custom track) |
Alignm length: | 269 |
Alignm identity: | 184 |
Alignm E-value: | 4e-29 |
Alignm gaps (pig, cow): | 97, 29 |
Conread position: | 158-506 |
Cow position: | chr9:55364936-55364576 (view UCSC Genome Browser custom track) |
Alignm length: | 366 |
Alignm identity: | 260 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 54, 80 |
Conread position: | 158-535 |
Cow position: | chr9:44944066-44944442 (view UCSC Genome Browser custom track) |
Alignm length: | 384 |
Alignm identity: | 276 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 35, 13 |
Conread position: | 158-590 |
Cow position: | chr9:1281061-1281497 (view UCSC Genome Browser custom track) |
Alignm length: | 450 |
Alignm identity: | 315 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 52, 16 |
Conread position: | 158-758 |
Cow position: | chr9:12183788-12183167 (view UCSC Genome Browser custom track) |
Alignm length: | 635 |
Alignm identity: | 439 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 72 |
Conread position: | 158-766 |
Cow position: | chr9:14732378-14731771 (view UCSC Genome Browser custom track) |
Alignm length: | 625 |
Alignm identity: | 417 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 52, 78 |
Conread position: | 159-378 |
Cow position: | chr9:2223732-2223954 (view UCSC Genome Browser custom track) |
Alignm length: | 224 |
Alignm identity: | 160 |
Alignm E-value: | 2e-32 |
Alignm gaps (pig, cow): | 51, 98 |
Conread position: | 159-766 |
Cow position: | chr9:34762811-34763426 (view UCSC Genome Browser custom track) |
Alignm length: | 628 |
Alignm identity: | 467 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 53, 77 |
Conread position: | 160-389 |
Cow position: | chr9:19079953-19080168 (view UCSC Genome Browser custom track) |
Alignm length: | 232 |
Alignm identity: | 164 |
Alignm E-value: | 2e-22 |
Alignm gaps (pig, cow): | 68, 27 |
Conread position: | 166-643 |
Cow position: | chr9:51269902-51269434 (view UCSC Genome Browser custom track) |
Alignm length: | 489 |
Alignm identity: | 343 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 44, 71 |
Conread position: | 166-780 |
Cow position: | chr9:25502498-25503084 (view UCSC Genome Browser custom track) |
Alignm length: | 622 |
Alignm identity: | 428 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 44, 70 |
Conread position: | 167-748 |
Cow position: | chr9:12198864-12199460 (view UCSC Genome Browser custom track) |
Alignm length: | 609 |
Alignm identity: | 429 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 44, 53 |
Conread position: | 168-390 |
Cow position: | chr9:11830034-11829813 (view UCSC Genome Browser custom track) |
Alignm length: | 226 |
Alignm identity: | 151 |
Alignm E-value: | 5e-21 |
Alignm gaps (pig, cow): | 81, 37 |
Conread position: | 170-766 |
Cow position: | chr9:4835018-4834419 (view UCSC Genome Browser custom track) |
Alignm length: | 622 |
Alignm identity: | 465 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 43, 66 |
Conread position: | 173-766 |
Cow position: | chr9:6109914-6109341 (view UCSC Genome Browser custom track) |
Alignm length: | 602 |
Alignm identity: | 417 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 180, 36 |
Conread position: | 178-769 |
Cow position: | chr9:18570364-18570958 (view UCSC Genome Browser custom track) |
Alignm length: | 606 |
Alignm identity: | 449 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 58 |
Conread position: | 194-589 |
Cow position: | chr9:5622018-5622408 (view UCSC Genome Browser custom track) |
Alignm length: | 408 |
Alignm identity: | 280 |
Alignm E-value: | 4.99983e-42 |
Alignm gaps (pig, cow): | 12, 42 |
Conread position: | 218-490 |
Cow position: | chr9:15685467-15685741 (view UCSC Genome Browser custom track) |
Alignm length: | 279 |
Alignm identity: | 186 |
Alignm E-value: | 8e-26 |
Alignm gaps (pig, cow): | 163, 17 |
Conread position: | 255-725 |
Cow position: | chr9:9077163-9077624 (view UCSC Genome Browser custom track) |
Alignm length: | 486 |
Alignm identity: | 357 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 132, 76 |
Conread position: | 262-557 |
Cow position: | chr9:39993676-39993971 (view UCSC Genome Browser custom track) |
Alignm length: | 305 |
Alignm identity: | 219 |
Alignm E-value: | 1.99965e-42 |
Alignm gaps (pig, cow): | 158, 121 |
Conread position: | 275-637 |
Cow position: | chr9:52725425-52725796 (view UCSC Genome Browser custom track) |
Alignm length: | 379 |
Alignm identity: | 275 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 118, 264 |
Conread position: | 280-719 |
Cow position: | chr9:7670538-7670100 (view UCSC Genome Browser custom track) |
Alignm length: | 449 |
Alignm identity: | 323 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 138, 265 |
Conread position: | 291-766 |
Cow position: | chr9:34188873-34188414 (view UCSC Genome Browser custom track) |
Alignm length: | 484 |
Alignm identity: | 351 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 136, 50 |
Conread position: | 292-680 |
Cow position: | chr9:53596899-53597299 (view UCSC Genome Browser custom track) |
Alignm length: | 412 |
Alignm identity: | 299 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 109, 18 |
Conread position: | 293-766 |
Cow position: | chr9:2638410-2638886 (view UCSC Genome Browser custom track) |
Alignm length: | 492 |
Alignm identity: | 346 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 94, 212 |
Conread position: | 315-766 |
Cow position: | chr9:38698356-38697924 (view UCSC Genome Browser custom track) |
Alignm length: | 462 |
Alignm identity: | 334 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 275, 98 |
Conread position: | 338-684 |
Cow position: | chr9:35527577-35527223 (view UCSC Genome Browser custom track) |
Alignm length: | 369 |
Alignm identity: | 266 |
Alignm E-value: | 6.02558e-44 |
Alignm gaps (pig, cow): | 82, 16 |
Conread position: | 356-613 |
Cow position: | chr9:46657812-46658057 (view UCSC Genome Browser custom track) |
Alignm length: | 260 |
Alignm identity: | 187 |
Alignm E-value: | 2e-32 |
Alignm gaps (pig, cow): | 148, 43 |
Conread position: | 373-778 |
Cow position: | chr9:35224773-35224379 (view UCSC Genome Browser custom track) |
Alignm length: | 418 |
Alignm identity: | 275 |
Alignm E-value: | 1e-29 |
Alignm gaps (pig, cow): | 57, 13 |
Conread position: | 378-750 |
Cow position: | chr9:55262435-55262789 (view UCSC Genome Browser custom track) |
Alignm length: | 377 |
Alignm identity: | 240 |
Alignm E-value: | 5e-21 |
Alignm gaps (pig, cow): | 21, 9 |
Conread position: | 378-753 |
Cow position: | chr9:12565198-12564836 (view UCSC Genome Browser custom track) |
Alignm length: | 384 |
Alignm identity: | 273 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 14, 115 |
Conread position: | 380-766 |
Cow position: | chr9:1526976-1527369 (view UCSC Genome Browser custom track) |
Alignm length: | 401 |
Alignm identity: | 302 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 40, 165 |
Conread position: | 386-765 |
Cow position: | chr9:39001578-39001212 (view UCSC Genome Browser custom track) |
Alignm length: | 389 |
Alignm identity: | 274 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 34, 156 |
Conread position: | 388-622 |
Cow position: | chr9:9539404-9539174 (view UCSC Genome Browser custom track) |
Alignm length: | 242 |
Alignm identity: | 171 |
Alignm E-value: | 6e-23 |
Alignm gaps (pig, cow): | 62, 31 |
Conread position: | 392-749 |
Cow position: | chr9:31540108-31540465 (view UCSC Genome Browser custom track) |
Alignm length: | 366 |
Alignm identity: | 228 |
Alignm E-value: | 5e-21 |
Alignm gaps (pig, cow): | 111, 46 |
Conread position: | 418-766 |
Cow position: | chr9:10003830-10003482 (view UCSC Genome Browser custom track) |
Alignm length: | 356 |
Alignm identity: | 232 |
Alignm E-value: | 1e-29 |
Alignm gaps (pig, cow): | 83, 114 |
Conread position: | 422-766 |
Cow position: | chr9:22377024-22376692 (view UCSC Genome Browser custom track) |
Alignm length: | 354 |
Alignm identity: | 260 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 170, 44 |
Conread position: | 424-758 |
Cow position: | chr9:15855268-15855597 (view UCSC Genome Browser custom track) |
Alignm length: | 341 |
Alignm identity: | 253 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 79, 107 |
Conread position: | 430-732 |
Cow position: | chr9:6557585-6557287 (view UCSC Genome Browser custom track) |
Alignm length: | 313 |
Alignm identity: | 218 |
Alignm E-value: | 5e-32 |
Alignm gaps (pig, cow): | 18, 46 |
Conread position: | 451-766 |
Cow position: | chr9:26585450-26585150 (view UCSC Genome Browser custom track) |
Alignm length: | 321 |
Alignm identity: | 223 |
Alignm E-value: | 5e-33 |
Alignm gaps (pig, cow): | 150, 40 |
Conread position: | 460-603 |
Cow position: | chr9:40858948-40859090 (view UCSC Genome Browser custom track) |
Alignm length: | 148 |
Alignm identity: | 115 |
Alignm E-value: | 2e-23 |
Alignm gaps (pig, cow): | 43, 78 |
Conread position: | 460-756 |
Cow position: | chr9:8234334-8234053 (view UCSC Genome Browser custom track) |
Alignm length: | 298 |
Alignm identity: | 225 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 44, 58 |
Conread position: | 460-757 |
Cow position: | chr9:25812575-25812853 (view UCSC Genome Browser custom track) |
Alignm length: | 298 |
Alignm identity: | 228 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 27, 0 |
Conread position: | 460-766 |
Cow position: | chr9:47200487-47200779 (view UCSC Genome Browser custom track) |
Alignm length: | 313 |
Alignm identity: | 218 |
Alignm E-value: | 1e-28 |
Alignm gaps (pig, cow): | 128, 35 |
Conread position: | 460-766 |
Cow position: | chr9:56411392-56411687 (view UCSC Genome Browser custom track) |
Alignm length: | 310 |
Alignm identity: | 218 |
Alignm E-value: | 9e-38 |
Alignm gaps (pig, cow): | 42, 60 |
Conread position: | 473-714 |
Cow position: | chr9:58125904-58125661 (view UCSC Genome Browser custom track) |
Alignm length: | 253 |
Alignm identity: | 193 |
Alignm E-value: | 1e-39 |
Alignm gaps (pig, cow): | 30, 67 |
Conread position: | 492-766 |
Cow position: | chr9:13072071-13071794 (view UCSC Genome Browser custom track) |
Alignm length: | 285 |
Alignm identity: | 207 |
Alignm E-value: | 1e-39 |
Alignm gaps (pig, cow): | 11, 26 |
Conread position: | 492-771 |
Cow position: | chr9:19835682-19835966 (view UCSC Genome Browser custom track) |
Alignm length: | 289 |
Alignm identity: | 217 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 10, 36 |
Conread position: | 493-748 |
Cow position: | chr9:45140597-45140339 (view UCSC Genome Browser custom track) |
Alignm length: | 267 |
Alignm identity: | 207 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 10, 43 |
Conread position: | 505-766 |
Cow position: | chr9:1517594-1517854 (view UCSC Genome Browser custom track) |
Alignm length: | 267 |
Alignm identity: | 199 |
Alignm E-value: | 2.00386e-43 |
Alignm gaps (pig, cow): | 17, 98 |
Conread position: | 507-637 |
Cow position: | chr9:31089932-31089807 (view UCSC Genome Browser custom track) |
Alignm length: | 131 |
Alignm identity: | 101 |
Alignm E-value: | 2e-21 |
Alignm gaps (pig, cow): | 30, 0 |
Conread position: | 522-767 |
Cow position: | chr9:23294316-23294075 (view UCSC Genome Browser custom track) |
Alignm length: | 249 |
Alignm identity: | 186 |
Alignm E-value: | 9.99995e-41 |
Alignm gaps (pig, cow): | 18, 46 |
Conread position: | 535-766 |
Cow position: | chr9:15282839-15282607 (view UCSC Genome Browser custom track) |
Alignm length: | 241 |
Alignm identity: | 179 |
Alignm E-value: | 6e-34 |
Alignm gaps (pig, cow): | 57, 166 |
Conread position: | 543-685 |
Cow position: | chr9:25634652-25634515 (view UCSC Genome Browser custom track) |
Alignm length: | 144 |
Alignm identity: | 111 |
Alignm E-value: | 2e-21 |
Alignm gaps (pig, cow): | 68, 41 |
Conread position: | 547-726 |
Cow position: | chr9:19081946-19082127 (view UCSC Genome Browser custom track) |
Alignm length: | 187 |
Alignm identity: | 149 |
Alignm E-value: | 2e-34 |
Alignm gaps (pig, cow): | 42, 99 |
Conread position: | 549-766 |
Cow position: | chr9:39994110-39994331 (view UCSC Genome Browser custom track) |
Alignm length: | 225 |
Alignm identity: | 173 |
Alignm E-value: | 4.00001e-41 |
Alignm gaps (pig, cow): | 43, 24 |
Conread position: | 551-764 |
Cow position: | chr9:64606088-64606302 (view UCSC Genome Browser custom track) |
Alignm length: | 221 |
Alignm identity: | 157 |
Alignm E-value: | 3e-26 |
Alignm gaps (pig, cow): | 65, 15 |
Conread position: | 553-769 |
Cow position: | chr9:62721192-62721411 (view UCSC Genome Browser custom track) |
Alignm length: | 222 |
Alignm identity: | 162 |
Alignm E-value: | 6e-34 |
Alignm gaps (pig, cow): | 39, 185 |
Conread position: | 561-766 |
Cow position: | chr9:55203021-55203225 (view UCSC Genome Browser custom track) |
Alignm length: | 208 |
Alignm identity: | 153 |
Alignm E-value: | 2e-32 |
Alignm gaps (pig, cow): | 35, 18 |
Conread position: | 564-728 |
Cow position: | chr9:59114089-59113912 (view UCSC Genome Browser custom track) |
Alignm length: | 178 |
Alignm identity: | 131 |
Alignm E-value: | 2e-22 |
Alignm gaps (pig, cow): | 28, 0 |
Conread position: | 565-754 |
Cow position: | chr9:19119586-19119768 (view UCSC Genome Browser custom track) |
Alignm length: | 193 |
Alignm identity: | 144 |
Alignm E-value: | 8e-26 |
Alignm gaps (pig, cow): | 26, 42 |
Conread position: | 569-710 |
Cow position: | chr9:14373748-14373599 (view UCSC Genome Browser custom track) |
Alignm length: | 152 |
Alignm identity: | 118 |
Alignm E-value: | 2e-21 |
Alignm gaps (pig, cow): | 22, 38 |
Conread position: | 571-758 |
Cow position: | chr9:33326234-33326054 (view UCSC Genome Browser custom track) |
Alignm length: | 190 |
Alignm identity: | 141 |
Alignm E-value: | 9e-27 |
Alignm gaps (pig, cow): | 20, 39 |
Conread position: | 572-766 |
Cow position: | chr9:40923021-40923222 (view UCSC Genome Browser custom track) |
Alignm length: | 203 |
Alignm identity: | 154 |
Alignm E-value: | 2e-34 |
Alignm gaps (pig, cow): | 22, 168 |
Conread position: | 573-725 |
Cow position: | chr9:42366454-42366297 (view UCSC Genome Browser custom track) |
Alignm length: | 162 |
Alignm identity: | 125 |
Alignm E-value: | 2e-23 |
Alignm gaps (pig, cow): | 19, 96 |
Conread position: | 582-766 |
Cow position: | chr9:35795046-35794862 (view UCSC Genome Browser custom track) |
Alignm length: | 188 |
Alignm identity: | 144 |
Alignm E-value: | 2e-32 |
Alignm gaps (pig, cow): | 25, 43 |
Conread position: | 589-749 |
Cow position: | chr9:26033672-26033830 (view UCSC Genome Browser custom track) |
Alignm length: | 165 |
Alignm identity: | 127 |
Alignm E-value: | 3e-26 |
Alignm gaps (pig, cow): | 17, 139 |
Conread position: | 589-765 |
Cow position: | chr9:56795114-56795286 (view UCSC Genome Browser custom track) |
Alignm length: | 179 |
Alignm identity: | 139 |
Alignm E-value: | 1e-31 |
Alignm gaps (pig, cow): | 17, 72 |
Conread position: | 605-766 |
Cow position: | chr9:416872-416713 (view UCSC Genome Browser custom track) |
Alignm length: | 162 |
Alignm identity: | 123 |
Alignm E-value: | 1e-28 |
Alignm gaps (pig, cow): | 77, 0 |
Conread position: | 610-758 |
Cow position: | chr9:8779658-8779798 (view UCSC Genome Browser custom track) |
Alignm length: | 149 |
Alignm identity: | 114 |
Alignm E-value: | 2e-23 |
Alignm gaps (pig, cow): | 32, 0 |
Conread position: | 610-766 |
Cow position: | chr9:5622457-5622612 (view UCSC Genome Browser custom track) |
Alignm length: | 157 |
Alignm identity: | 118 |
Alignm E-value: | 3e-27 |
Alignm gaps (pig, cow): | 122, 0 |
Conread position: | 610-766 |
Cow position: | chr9:20394649-20394802 (view UCSC Genome Browser custom track) |
Alignm length: | 158 |
Alignm identity: | 120 |
Alignm E-value: | 2e-25 |
Alignm gaps (pig, cow): | 100, 30 |
Conread position: | 614-766 |
Cow position: | chr9:48076142-48076295 (view UCSC Genome Browser custom track) |
Alignm length: | 154 |
Alignm identity: | 115 |
Alignm E-value: | 8e-26 |
Alignm gaps (pig, cow): | 145, 0 |
Conread position: | 626-766 |
Cow position: | chr9:35527059-35526920 (view UCSC Genome Browser custom track) |
Alignm length: | 141 |
Alignm identity: | 111 |
Alignm E-value: | 3e-28 |
Alignm gaps (pig, cow): | 107, 0 |
Conread position: | 639-767 |
Cow position: | chr9:37301901-37301774 (view UCSC Genome Browser custom track) |
Alignm length: | 129 |
Alignm identity: | 104 |
Alignm E-value: | 3e-27 |
Alignm gaps (pig, cow): | 94, 0 |
Show alignments to all cow chromosomes.