Cow genome map

Conread name: Ss1.1-Pig3-SRG8022E11.3

Conread position: 157-766
Cow position: chr9:41317931-41318555 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 80

Conread position: 158-379
Cow position: chr9:5485907-5485690 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 157
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 98, 54

Conread position: 158-379
Cow position: chr9:13845779-13845567 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 160
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 54, 24

Conread position: 158-379
Cow position: chr9:22976817-22977036 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 168
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 85, 71

Conread position: 158-413
Cow position: chr9:55651075-55650820 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 176
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 91, 24

Conread position: 158-417
Cow position: chr9:12182010-12181750 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 188
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 54, 97

Conread position: 158-418
Cow position: chr9:10761308-10761558 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 190
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 52, 28

Conread position: 158-418
Cow position: chr9:59114418-59114153 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 184
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 97, 29

Conread position: 158-506
Cow position: chr9:55364936-55364576 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 80

Conread position: 158-535
Cow position: chr9:44944066-44944442 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 13

Conread position: 158-590
Cow position: chr9:1281061-1281497 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 16

Conread position: 158-758
Cow position: chr9:12183788-12183167 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 72

Conread position: 158-766
Cow position: chr9:14732378-14731771 (view UCSC Genome Browser custom track)
Alignm length: 625
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 78

Conread position: 159-378
Cow position: chr9:2223732-2223954 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 160
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 51, 98

Conread position: 159-766
Cow position: chr9:34762811-34763426 (view UCSC Genome Browser custom track)
Alignm length: 628
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 77

Conread position: 160-389
Cow position: chr9:19079953-19080168 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 164
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 68, 27

Conread position: 166-643
Cow position: chr9:51269902-51269434 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 71

Conread position: 166-780
Cow position: chr9:25502498-25503084 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 70

Conread position: 167-748
Cow position: chr9:12198864-12199460 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 53

Conread position: 168-390
Cow position: chr9:11830034-11829813 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 151
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 81, 37

Conread position: 170-766
Cow position: chr9:4835018-4834419 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 66

Conread position: 173-766
Cow position: chr9:6109914-6109341 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 36

Conread position: 178-769
Cow position: chr9:18570364-18570958 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 58

Conread position: 194-589
Cow position: chr9:5622018-5622408 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 280
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 12, 42

Conread position: 218-490
Cow position: chr9:15685467-15685741 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 186
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 163, 17

Conread position: 255-725
Cow position: chr9:9077163-9077624 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 76

Conread position: 262-557
Cow position: chr9:39993676-39993971 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 219
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 158, 121

Conread position: 275-637
Cow position: chr9:52725425-52725796 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 264

Conread position: 280-719
Cow position: chr9:7670538-7670100 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 265

Conread position: 291-766
Cow position: chr9:34188873-34188414 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 50

Conread position: 292-680
Cow position: chr9:53596899-53597299 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 18

Conread position: 293-766
Cow position: chr9:2638410-2638886 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 212

Conread position: 315-766
Cow position: chr9:38698356-38697924 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 98

Conread position: 338-684
Cow position: chr9:35527577-35527223 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 266
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 82, 16

Conread position: 356-613
Cow position: chr9:46657812-46658057 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 187
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 148, 43

Conread position: 373-778
Cow position: chr9:35224773-35224379 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 275
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 57, 13

Conread position: 378-750
Cow position: chr9:55262435-55262789 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 240
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 21, 9

Conread position: 378-753
Cow position: chr9:12565198-12564836 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 115

Conread position: 380-766
Cow position: chr9:1526976-1527369 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 165

Conread position: 386-765
Cow position: chr9:39001578-39001212 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 274
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 34, 156

Conread position: 388-622
Cow position: chr9:9539404-9539174 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 171
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 62, 31

Conread position: 392-749
Cow position: chr9:31540108-31540465 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 228
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 111, 46

Conread position: 418-766
Cow position: chr9:10003830-10003482 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 232
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 83, 114

Conread position: 422-766
Cow position: chr9:22377024-22376692 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 44

Conread position: 424-758
Cow position: chr9:15855268-15855597 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 107

Conread position: 430-732
Cow position: chr9:6557585-6557287 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 218
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 18, 46

Conread position: 451-766
Cow position: chr9:26585450-26585150 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 223
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 150, 40

Conread position: 460-603
Cow position: chr9:40858948-40859090 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 115
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 43, 78

Conread position: 460-756
Cow position: chr9:8234334-8234053 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 58

Conread position: 460-757
Cow position: chr9:25812575-25812853 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 460-766
Cow position: chr9:47200487-47200779 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 218
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 128, 35

Conread position: 460-766
Cow position: chr9:56411392-56411687 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 218
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 42, 60

Conread position: 473-714
Cow position: chr9:58125904-58125661 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 193
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 30, 67

Conread position: 492-766
Cow position: chr9:13072071-13071794 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 207
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 11, 26

Conread position: 492-771
Cow position: chr9:19835682-19835966 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 36

Conread position: 493-748
Cow position: chr9:45140597-45140339 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 43

Conread position: 505-766
Cow position: chr9:1517594-1517854 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 199
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 17, 98

Conread position: 507-637
Cow position: chr9:31089932-31089807 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 101
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 30, 0

Conread position: 522-767
Cow position: chr9:23294316-23294075 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 186
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 18, 46

Conread position: 535-766
Cow position: chr9:15282839-15282607 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 179
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 57, 166

Conread position: 543-685
Cow position: chr9:25634652-25634515 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 111
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 68, 41

Conread position: 547-726
Cow position: chr9:19081946-19082127 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 149
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 42, 99

Conread position: 549-766
Cow position: chr9:39994110-39994331 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 173
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 43, 24

Conread position: 551-764
Cow position: chr9:64606088-64606302 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 157
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 65, 15

Conread position: 553-769
Cow position: chr9:62721192-62721411 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 162
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 39, 185

Conread position: 561-766
Cow position: chr9:55203021-55203225 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 153
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 35, 18

Conread position: 564-728
Cow position: chr9:59114089-59113912 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 131
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 28, 0

Conread position: 565-754
Cow position: chr9:19119586-19119768 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 144
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 26, 42

Conread position: 569-710
Cow position: chr9:14373748-14373599 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 118
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 22, 38

Conread position: 571-758
Cow position: chr9:33326234-33326054 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 141
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 20, 39

Conread position: 572-766
Cow position: chr9:40923021-40923222 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 154
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 22, 168

Conread position: 573-725
Cow position: chr9:42366454-42366297 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 125
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 19, 96

Conread position: 582-766
Cow position: chr9:35795046-35794862 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 144
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 25, 43

Conread position: 589-749
Cow position: chr9:26033672-26033830 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 127
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 17, 139

Conread position: 589-765
Cow position: chr9:56795114-56795286 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 139
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 17, 72

Conread position: 605-766
Cow position: chr9:416872-416713 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 123
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 77, 0

Conread position: 610-758
Cow position: chr9:8779658-8779798 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 114
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 32, 0

Conread position: 610-766
Cow position: chr9:5622457-5622612 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 118
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 122, 0

Conread position: 610-766
Cow position: chr9:20394649-20394802 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 100, 30

Conread position: 614-766
Cow position: chr9:48076142-48076295 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 115
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 145, 0

Conread position: 626-766
Cow position: chr9:35527059-35526920 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 111
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 107, 0

Conread position: 639-767
Cow position: chr9:37301901-37301774 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 104
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 94, 0

Show alignments to all cow chromosomes.