Cow genome map
Conread name: | Ss1.1-Pig3-SRG8022E11.3 |
Conread position: | 141-758 |
Cow position: | chrX:25453184-25453788 (view UCSC Genome Browser custom track) |
Alignm length: | 629 |
Alignm identity: | 473 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 200, 17 |
Conread position: | 151-763 |
Cow position: | chrX:19018247-19017616 (view UCSC Genome Browser custom track) |
Alignm length: | 649 |
Alignm identity: | 480 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 9, 55 |
Conread position: | 152-766 |
Cow position: | chrX:18814182-18814800 (view UCSC Genome Browser custom track) |
Alignm length: | 635 |
Alignm identity: | 465 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 62, 84 |
Conread position: | 155-367 |
Cow position: | chrX:12826763-12826977 (view UCSC Genome Browser custom track) |
Alignm length: | 217 |
Alignm identity: | 156 |
Alignm E-value: | 3e-30 |
Alignm gaps (pig, cow): | 5, 74 |
Conread position: | 157-725 |
Cow position: | chrX:4597710-4597113 (view UCSC Genome Browser custom track) |
Alignm length: | 611 |
Alignm identity: | 439 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 54, 77 |
Conread position: | 157-766 |
Cow position: | chrX:16816681-16817265 (view UCSC Genome Browser custom track) |
Alignm length: | 622 |
Alignm identity: | 447 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 35, 86 |
Conread position: | 158-320 |
Cow position: | chrX:37956373-37956531 (view UCSC Genome Browser custom track) |
Alignm length: | 165 |
Alignm identity: | 125 |
Alignm E-value: | 2e-24 |
Alignm gaps (pig, cow): | 89, 28 |
Conread position: | 158-329 |
Cow position: | chrX:24952540-24952372 (view UCSC Genome Browser custom track) |
Alignm length: | 175 |
Alignm identity: | 129 |
Alignm E-value: | 1e-23 |
Alignm gaps (pig, cow): | 54, 68 |
Conread position: | 158-413 |
Cow position: | chrX:30729396-30729141 (view UCSC Genome Browser custom track) |
Alignm length: | 260 |
Alignm identity: | 171 |
Alignm E-value: | 4e-22 |
Alignm gaps (pig, cow): | 52, 72 |
Conread position: | 158-416 |
Cow position: | chrX:4631655-4631395 (view UCSC Genome Browser custom track) |
Alignm length: | 266 |
Alignm identity: | 206 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 93, 77 |
Conread position: | 158-418 |
Cow position: | chrX:24285973-24286236 (view UCSC Genome Browser custom track) |
Alignm length: | 268 |
Alignm identity: | 195 |
Alignm E-value: | 8.99999e-40 |
Alignm gaps (pig, cow): | 53, 78 |
Conread position: | 158-577 |
Cow position: | chrX:10311763-10312171 (view UCSC Genome Browser custom track) |
Alignm length: | 432 |
Alignm identity: | 309 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 53, 78 |
Conread position: | 158-605 |
Cow position: | chrX:41660194-41660610 (view UCSC Genome Browser custom track) |
Alignm length: | 459 |
Alignm identity: | 315 |
Alignm E-value: | 6e-36 |
Alignm gaps (pig, cow): | 51, 72 |
Conread position: | 158-628 |
Cow position: | chrX:8558446-8557980 (view UCSC Genome Browser custom track) |
Alignm length: | 482 |
Alignm identity: | 358 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 54, 47 |
Conread position: | 158-766 |
Cow position: | chrX:20504732-20505329 (view UCSC Genome Browser custom track) |
Alignm length: | 627 |
Alignm identity: | 472 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 52, 78 |
Conread position: | 158-766 |
Cow position: | chrX:21816282-21816889 (view UCSC Genome Browser custom track) |
Alignm length: | 631 |
Alignm identity: | 476 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 54, 95 |
Conread position: | 158-767 |
Cow position: | chrX:11675081-11675701 (view UCSC Genome Browser custom track) |
Alignm length: | 630 |
Alignm identity: | 481 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 52, 78 |
Conread position: | 158-767 |
Cow position: | chrX:24201198-24201782 (view UCSC Genome Browser custom track) |
Alignm length: | 617 |
Alignm identity: | 424 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 53, 24 |
Conread position: | 158-780 |
Cow position: | chrX:2147361-2147946 (view UCSC Genome Browser custom track) |
Alignm length: | 629 |
Alignm identity: | 466 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 54, 39 |
Conread position: | 159-754 |
Cow position: | chrX:12689069-12688464 (view UCSC Genome Browser custom track) |
Alignm length: | 620 |
Alignm identity: | 432 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 55, 317 |
Conread position: | 159-764 |
Cow position: | chrX:23254188-23253594 (view UCSC Genome Browser custom track) |
Alignm length: | 624 |
Alignm identity: | 451 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 77 |
Conread position: | 159-766 |
Cow position: | chrX:2186270-2186881 (view UCSC Genome Browser custom track) |
Alignm length: | 639 |
Alignm identity: | 469 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 43, 84 |
Conread position: | 163-390 |
Cow position: | chrX:19818857-19818629 (view UCSC Genome Browser custom track) |
Alignm length: | 229 |
Alignm identity: | 149 |
Alignm E-value: | 1e-22 |
Alignm gaps (pig, cow): | 50, 0 |
Conread position: | 193-740 |
Cow position: | chrX:21886064-21885501 (view UCSC Genome Browser custom track) |
Alignm length: | 578 |
Alignm identity: | 405 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 19, 9 |
Conread position: | 216-725 |
Cow position: | chrX:956556-957073 (view UCSC Genome Browser custom track) |
Alignm length: | 530 |
Alignm identity: | 391 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 37, 19 |
Conread position: | 218-717 |
Cow position: | chrX:43647686-43647182 (view UCSC Genome Browser custom track) |
Alignm length: | 524 |
Alignm identity: | 368 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 36, 17 |
Conread position: | 241-580 |
Cow position: | chrX:1426859-1427188 (view UCSC Genome Browser custom track) |
Alignm length: | 349 |
Alignm identity: | 244 |
Alignm E-value: | 2e-38 |
Alignm gaps (pig, cow): | 13, 150 |
Conread position: | 243-653 |
Cow position: | chrX:25106314-25106738 (view UCSC Genome Browser custom track) |
Alignm length: | 432 |
Alignm identity: | 315 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 176, 10 |
Conread position: | 248-765 |
Cow position: | chrX:9910646-9910135 (view UCSC Genome Browser custom track) |
Alignm length: | 535 |
Alignm identity: | 386 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 103, 37 |
Conread position: | 255-641 |
Cow position: | chrX:31816806-31817179 (view UCSC Genome Browser custom track) |
Alignm length: | 396 |
Alignm identity: | 283 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 244, 11 |
Conread position: | 275-558 |
Cow position: | chrX:18517921-18518225 (view UCSC Genome Browser custom track) |
Alignm length: | 305 |
Alignm identity: | 217 |
Alignm E-value: | 3e-39 |
Alignm gaps (pig, cow): | 115, 0 |
Conread position: | 275-766 |
Cow position: | chrX:4590087-4590572 (view UCSC Genome Browser custom track) |
Alignm length: | 505 |
Alignm identity: | 373 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 17, 6 |
Conread position: | 286-510 |
Cow position: | chrX:19217181-19216945 (view UCSC Genome Browser custom track) |
Alignm length: | 237 |
Alignm identity: | 169 |
Alignm E-value: | 3e-30 |
Alignm gaps (pig, cow): | 67, 0 |
Conread position: | 296-682 |
Cow position: | chrX:28938949-28939322 (view UCSC Genome Browser custom track) |
Alignm length: | 398 |
Alignm identity: | 289 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 117, 199 |
Conread position: | 299-535 |
Cow position: | chrX:9051276-9051033 (view UCSC Genome Browser custom track) |
Alignm length: | 244 |
Alignm identity: | 163 |
Alignm E-value: | 1e-23 |
Alignm gaps (pig, cow): | 57, 0 |
Conread position: | 302-766 |
Cow position: | chrX:40353471-40353932 (view UCSC Genome Browser custom track) |
Alignm length: | 481 |
Alignm identity: | 352 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 118, 47 |
Conread position: | 323-752 |
Cow position: | chrX:37956753-37957174 (view UCSC Genome Browser custom track) |
Alignm length: | 447 |
Alignm identity: | 315 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 97, 47 |
Conread position: | 329-603 |
Cow position: | chrX:13060743-13061002 (view UCSC Genome Browser custom track) |
Alignm length: | 279 |
Alignm identity: | 197 |
Alignm E-value: | 3e-29 |
Alignm gaps (pig, cow): | 48, 55 |
Conread position: | 338-766 |
Cow position: | chrX:24952176-24951723 (view UCSC Genome Browser custom track) |
Alignm length: | 468 |
Alignm identity: | 330 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 52, 135 |
Conread position: | 344-763 |
Cow position: | chrX:27458532-27458117 (view UCSC Genome Browser custom track) |
Alignm length: | 435 |
Alignm identity: | 323 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 35, 93 |
Conread position: | 344-766 |
Cow position: | chrX:37980580-37981007 (view UCSC Genome Browser custom track) |
Alignm length: | 440 |
Alignm identity: | 306 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 47, 205 |
Conread position: | 352-766 |
Cow position: | chrX:19127430-19127019 (view UCSC Genome Browser custom track) |
Alignm length: | 429 |
Alignm identity: | 321 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 38, 186 |
Conread position: | 369-766 |
Cow position: | chrX:6471929-6472334 (view UCSC Genome Browser custom track) |
Alignm length: | 415 |
Alignm identity: | 304 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 29, 24 |
Conread position: | 370-704 |
Cow position: | chrX:2700880-2700544 (view UCSC Genome Browser custom track) |
Alignm length: | 350 |
Alignm identity: | 246 |
Alignm E-value: | 8e-39 |
Alignm gaps (pig, cow): | 50, 17 |
Conread position: | 374-685 |
Cow position: | chrX:24194015-24194319 (view UCSC Genome Browser custom track) |
Alignm length: | 322 |
Alignm identity: | 218 |
Alignm E-value: | 6e-26 |
Alignm gaps (pig, cow): | 46, 12 |
Conread position: | 374-730 |
Cow position: | chrX:25921559-25921214 (view UCSC Genome Browser custom track) |
Alignm length: | 372 |
Alignm identity: | 271 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 22, 64 |
Conread position: | 376-758 |
Cow position: | chrX:37364647-37365015 (view UCSC Genome Browser custom track) |
Alignm length: | 394 |
Alignm identity: | 261 |
Alignm E-value: | 2e-27 |
Alignm gaps (pig, cow): | 44, 62 |
Conread position: | 378-774 |
Cow position: | chrX:24886551-24886163 (view UCSC Genome Browser custom track) |
Alignm length: | 405 |
Alignm identity: | 265 |
Alignm E-value: | 1e-31 |
Alignm gaps (pig, cow): | 42, 120 |
Conread position: | 380-750 |
Cow position: | chrX:10462560-10462913 (view UCSC Genome Browser custom track) |
Alignm length: | 374 |
Alignm identity: | 246 |
Alignm E-value: | 3e-31 |
Alignm gaps (pig, cow): | 117, 20 |
Conread position: | 383-757 |
Cow position: | chrX:4625142-4625528 (view UCSC Genome Browser custom track) |
Alignm length: | 394 |
Alignm identity: | 298 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 37, 162 |
Conread position: | 383-766 |
Cow position: | chrX:11982838-11983208 (view UCSC Genome Browser custom track) |
Alignm length: | 400 |
Alignm identity: | 292 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 37, 112 |
Conread position: | 387-706 |
Cow position: | chrX:32546133-32546467 (view UCSC Genome Browser custom track) |
Alignm length: | 340 |
Alignm identity: | 232 |
Alignm E-value: | 4e-32 |
Alignm gaps (pig, cow): | 35, 158 |
Conread position: | 388-765 |
Cow position: | chrX:18700119-18699735 (view UCSC Genome Browser custom track) |
Alignm length: | 392 |
Alignm identity: | 286 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 24 |
Conread position: | 389-767 |
Cow position: | chrX:37138032-37137645 (view UCSC Genome Browser custom track) |
Alignm length: | 399 |
Alignm identity: | 268 |
Alignm E-value: | 5e-35 |
Alignm gaps (pig, cow): | 31, 77 |
Conread position: | 416-767 |
Cow position: | chrX:13403470-13403124 (view UCSC Genome Browser custom track) |
Alignm length: | 359 |
Alignm identity: | 265 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 87, 122 |
Conread position: | 418-754 |
Cow position: | chrX:4631096-4630764 (view UCSC Genome Browser custom track) |
Alignm length: | 343 |
Alignm identity: | 256 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 86, 17 |
Conread position: | 421-578 |
Cow position: | chrX:25653394-25653544 (view UCSC Genome Browser custom track) |
Alignm length: | 159 |
Alignm identity: | 122 |
Alignm E-value: | 5e-25 |
Alignm gaps (pig, cow): | 78, 111 |
Conread position: | 423-768 |
Cow position: | chrX:10534364-10534705 (view UCSC Genome Browser custom track) |
Alignm length: | 359 |
Alignm identity: | 250 |
Alignm E-value: | 2e-35 |
Alignm gaps (pig, cow): | 76, 8 |
Conread position: | 424-766 |
Cow position: | chrX:4601358-4601030 (view UCSC Genome Browser custom track) |
Alignm length: | 350 |
Alignm identity: | 256 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 78, 36 |
Conread position: | 440-758 |
Cow position: | chrX:40698541-40698837 (view UCSC Genome Browser custom track) |
Alignm length: | 326 |
Alignm identity: | 234 |
Alignm E-value: | 5e-34 |
Alignm gaps (pig, cow): | 14, 38 |
Conread position: | 447-758 |
Cow position: | chrX:37236321-37236618 (view UCSC Genome Browser custom track) |
Alignm length: | 321 |
Alignm identity: | 242 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 144, 40 |
Conread position: | 449-766 |
Cow position: | chrX:4440165-4440475 (view UCSC Genome Browser custom track) |
Alignm length: | 328 |
Alignm identity: | 247 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 143, 38 |
Conread position: | 474-780 |
Cow position: | chrX:1330463-1330159 (view UCSC Genome Browser custom track) |
Alignm length: | 314 |
Alignm identity: | 235 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 27, 65 |
Conread position: | 481-761 |
Cow position: | chrX:4019590-4019302 (view UCSC Genome Browser custom track) |
Alignm length: | 295 |
Alignm identity: | 206 |
Alignm E-value: | 4e-33 |
Alignm gaps (pig, cow): | 21, 53 |
Conread position: | 500-765 |
Cow position: | chrX:20957928-20958201 (view UCSC Genome Browser custom track) |
Alignm length: | 282 |
Alignm identity: | 203 |
Alignm E-value: | 2e-34 |
Alignm gaps (pig, cow): | 101, 30 |
Conread position: | 500-766 |
Cow position: | chrX:32456147-32456388 (view UCSC Genome Browser custom track) |
Alignm length: | 270 |
Alignm identity: | 192 |
Alignm E-value: | 1e-23 |
Alignm gaps (pig, cow): | 92, 31 |
Conread position: | 502-755 |
Cow position: | chrX:37749012-37749270 (view UCSC Genome Browser custom track) |
Alignm length: | 265 |
Alignm identity: | 193 |
Alignm E-value: | 6e-37 |
Alignm gaps (pig, cow): | 90, 35 |
Conread position: | 506-766 |
Cow position: | chrX:5956968-5956714 (view UCSC Genome Browser custom track) |
Alignm length: | 266 |
Alignm identity: | 204 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 86, 21 |
Conread position: | 537-766 |
Cow position: | chrX:6672170-6672403 (view UCSC Genome Browser custom track) |
Alignm length: | 239 |
Alignm identity: | 190 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 55, 22 |
Conread position: | 542-706 |
Cow position: | chrX:4948101-4947933 (view UCSC Genome Browser custom track) |
Alignm length: | 172 |
Alignm identity: | 136 |
Alignm E-value: | 4e-32 |
Alignm gaps (pig, cow): | 50, 122 |
Conread position: | 543-766 |
Cow position: | chrX:34100417-34100631 (view UCSC Genome Browser custom track) |
Alignm length: | 226 |
Alignm identity: | 164 |
Alignm E-value: | 8e-29 |
Alignm gaps (pig, cow): | 47, 67 |
Conread position: | 544-766 |
Cow position: | chrX:35552746-35552963 (view UCSC Genome Browser custom track) |
Alignm length: | 228 |
Alignm identity: | 179 |
Alignm E-value: | 3.99931e-42 |
Alignm gaps (pig, cow): | 43, 22 |
Conread position: | 544-767 |
Cow position: | chrX:18518438-18518662 (view UCSC Genome Browser custom track) |
Alignm length: | 228 |
Alignm identity: | 186 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 48, 25 |
Conread position: | 544-780 |
Cow position: | chrX:11851368-11851139 (view UCSC Genome Browser custom track) |
Alignm length: | 239 |
Alignm identity: | 177 |
Alignm E-value: | 2e-37 |
Alignm gaps (pig, cow): | 48, 38 |
Conread position: | 566-761 |
Cow position: | chrX:40350322-40350517 (view UCSC Genome Browser custom track) |
Alignm length: | 205 |
Alignm identity: | 159 |
Alignm E-value: | 1e-32 |
Alignm gaps (pig, cow): | 23, 116 |
Conread position: | 568-758 |
Cow position: | chrX:1427692-1427890 (view UCSC Genome Browser custom track) |
Alignm length: | 201 |
Alignm identity: | 159 |
Alignm E-value: | 2e-38 |
Alignm gaps (pig, cow): | 24, 144 |
Conread position: | 568-768 |
Cow position: | chrX:19391840-19391648 (view UCSC Genome Browser custom track) |
Alignm length: | 204 |
Alignm identity: | 165 |
Alignm E-value: | 3e-39 |
Alignm gaps (pig, cow): | 24, 16 |
Conread position: | 570-765 |
Cow position: | chrX:30784978-30785179 (view UCSC Genome Browser custom track) |
Alignm length: | 206 |
Alignm identity: | 150 |
Alignm E-value: | 2e-26 |
Alignm gaps (pig, cow): | 44, 100 |
Conread position: | 601-766 |
Cow position: | chrX:25653542-25653709 (view UCSC Genome Browser custom track) |
Alignm length: | 169 |
Alignm identity: | 133 |
Alignm E-value: | 1e-33 |
Alignm gaps (pig, cow): | 13, 134 |
Conread position: | 608-757 |
Cow position: | chrX:34035609-34035757 (view UCSC Genome Browser custom track) |
Alignm length: | 151 |
Alignm identity: | 111 |
Alignm E-value: | 1e-21 |
Alignm gaps (pig, cow): | 102, 110 |
Conread position: | 610-767 |
Cow position: | chrX:24286529-24286681 (view UCSC Genome Browser custom track) |
Alignm length: | 158 |
Alignm identity: | 129 |
Alignm E-value: | 2e-34 |
Alignm gaps (pig, cow): | 66, 0 |
Conread position: | 617-752 |
Cow position: | chrX:30729307-30729173 (view UCSC Genome Browser custom track) |
Alignm length: | 136 |
Alignm identity: | 108 |
Alignm E-value: | 7e-28 |
Alignm gaps (pig, cow): | 116, 0 |
Conread position: | 617-766 |
Cow position: | chrX:503087-502939 (view UCSC Genome Browser custom track) |
Alignm length: | 150 |
Alignm identity: | 120 |
Alignm E-value: | 1e-32 |
Alignm gaps (pig, cow): | 116, 0 |
Conread position: | 631-765 |
Cow position: | chrX:19216433-19216301 (view UCSC Genome Browser custom track) |
Alignm length: | 135 |
Alignm identity: | 104 |
Alignm E-value: | 1e-23 |
Alignm gaps (pig, cow): | 54, 0 |
Conread position: | 631-766 |
Cow position: | chrX:8557702-8557569 (view UCSC Genome Browser custom track) |
Alignm length: | 137 |
Alignm identity: | 107 |
Alignm E-value: | 1e-23 |
Alignm gaps (pig, cow): | 77, 87 |
Show alignments to all cow chromosomes.