Cow genome map

Conread name: Ss1.1-Pig3-SRG8022E11.3

Conread position: 141-758
Cow position: chrX:25453184-25453788 (view UCSC Genome Browser custom track)
Alignm length: 629
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 17

Conread position: 151-763
Cow position: chrX:19018247-19017616 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 55

Conread position: 152-766
Cow position: chrX:18814182-18814800 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 84

Conread position: 155-367
Cow position: chrX:12826763-12826977 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 156
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 5, 74

Conread position: 157-725
Cow position: chrX:4597710-4597113 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 77

Conread position: 157-766
Cow position: chrX:16816681-16817265 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 86

Conread position: 158-320
Cow position: chrX:37956373-37956531 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 125
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 89, 28

Conread position: 158-329
Cow position: chrX:24952540-24952372 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 129
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 54, 68

Conread position: 158-413
Cow position: chrX:30729396-30729141 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 171
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 52, 72

Conread position: 158-416
Cow position: chrX:4631655-4631395 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 77

Conread position: 158-418
Cow position: chrX:24285973-24286236 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 195
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 53, 78

Conread position: 158-577
Cow position: chrX:10311763-10312171 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 78

Conread position: 158-605
Cow position: chrX:41660194-41660610 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 315
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 51, 72

Conread position: 158-628
Cow position: chrX:8558446-8557980 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 47

Conread position: 158-766
Cow position: chrX:20504732-20505329 (view UCSC Genome Browser custom track)
Alignm length: 627
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 78

Conread position: 158-766
Cow position: chrX:21816282-21816889 (view UCSC Genome Browser custom track)
Alignm length: 631
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 95

Conread position: 158-767
Cow position: chrX:11675081-11675701 (view UCSC Genome Browser custom track)
Alignm length: 630
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 78

Conread position: 158-767
Cow position: chrX:24201198-24201782 (view UCSC Genome Browser custom track)
Alignm length: 617
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 24

Conread position: 158-780
Cow position: chrX:2147361-2147946 (view UCSC Genome Browser custom track)
Alignm length: 629
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 39

Conread position: 159-754
Cow position: chrX:12689069-12688464 (view UCSC Genome Browser custom track)
Alignm length: 620
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 317

Conread position: 159-764
Cow position: chrX:23254188-23253594 (view UCSC Genome Browser custom track)
Alignm length: 624
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 77

Conread position: 159-766
Cow position: chrX:2186270-2186881 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 84

Conread position: 163-390
Cow position: chrX:19818857-19818629 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 149
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 50, 0

Conread position: 193-740
Cow position: chrX:21886064-21885501 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 9

Conread position: 216-725
Cow position: chrX:956556-957073 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 19

Conread position: 218-717
Cow position: chrX:43647686-43647182 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 17

Conread position: 241-580
Cow position: chrX:1426859-1427188 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 244
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 13, 150

Conread position: 243-653
Cow position: chrX:25106314-25106738 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 10

Conread position: 248-765
Cow position: chrX:9910646-9910135 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 37

Conread position: 255-641
Cow position: chrX:31816806-31817179 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 244, 11

Conread position: 275-558
Cow position: chrX:18517921-18518225 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 217
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 115, 0

Conread position: 275-766
Cow position: chrX:4590087-4590572 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 6

Conread position: 286-510
Cow position: chrX:19217181-19216945 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 169
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 67, 0

Conread position: 296-682
Cow position: chrX:28938949-28939322 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 199

Conread position: 299-535
Cow position: chrX:9051276-9051033 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 163
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 57, 0

Conread position: 302-766
Cow position: chrX:40353471-40353932 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 47

Conread position: 323-752
Cow position: chrX:37956753-37957174 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 47

Conread position: 329-603
Cow position: chrX:13060743-13061002 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 197
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 48, 55

Conread position: 338-766
Cow position: chrX:24952176-24951723 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 330
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 52, 135

Conread position: 344-763
Cow position: chrX:27458532-27458117 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 93

Conread position: 344-766
Cow position: chrX:37980580-37981007 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 205

Conread position: 352-766
Cow position: chrX:19127430-19127019 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 186

Conread position: 369-766
Cow position: chrX:6471929-6472334 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 24

Conread position: 370-704
Cow position: chrX:2700880-2700544 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 246
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 50, 17

Conread position: 374-685
Cow position: chrX:24194015-24194319 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 218
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 46, 12

Conread position: 374-730
Cow position: chrX:25921559-25921214 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 271
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 22, 64

Conread position: 376-758
Cow position: chrX:37364647-37365015 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 261
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 44, 62

Conread position: 378-774
Cow position: chrX:24886551-24886163 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 265
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 42, 120

Conread position: 380-750
Cow position: chrX:10462560-10462913 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 246
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 117, 20

Conread position: 383-757
Cow position: chrX:4625142-4625528 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 162

Conread position: 383-766
Cow position: chrX:11982838-11983208 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 112

Conread position: 387-706
Cow position: chrX:32546133-32546467 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 232
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 35, 158

Conread position: 388-765
Cow position: chrX:18700119-18699735 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 24

Conread position: 389-767
Cow position: chrX:37138032-37137645 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 268
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 31, 77

Conread position: 416-767
Cow position: chrX:13403470-13403124 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 122

Conread position: 418-754
Cow position: chrX:4631096-4630764 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 17

Conread position: 421-578
Cow position: chrX:25653394-25653544 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 122
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 78, 111

Conread position: 423-768
Cow position: chrX:10534364-10534705 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 250
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 76, 8

Conread position: 424-766
Cow position: chrX:4601358-4601030 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 36

Conread position: 440-758
Cow position: chrX:40698541-40698837 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 234
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 14, 38

Conread position: 447-758
Cow position: chrX:37236321-37236618 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 40

Conread position: 449-766
Cow position: chrX:4440165-4440475 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 38

Conread position: 474-780
Cow position: chrX:1330463-1330159 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 65

Conread position: 481-761
Cow position: chrX:4019590-4019302 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 206
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 21, 53

Conread position: 500-765
Cow position: chrX:20957928-20958201 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 203
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 101, 30

Conread position: 500-766
Cow position: chrX:32456147-32456388 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 192
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 92, 31

Conread position: 502-755
Cow position: chrX:37749012-37749270 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 193
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 90, 35

Conread position: 506-766
Cow position: chrX:5956968-5956714 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 21

Conread position: 537-766
Cow position: chrX:6672170-6672403 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 22

Conread position: 542-706
Cow position: chrX:4948101-4947933 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 136
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 50, 122

Conread position: 543-766
Cow position: chrX:34100417-34100631 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 164
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 47, 67

Conread position: 544-766
Cow position: chrX:35552746-35552963 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 179
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 43, 22

Conread position: 544-767
Cow position: chrX:18518438-18518662 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 25

Conread position: 544-780
Cow position: chrX:11851368-11851139 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 177
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 48, 38

Conread position: 566-761
Cow position: chrX:40350322-40350517 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 159
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 23, 116

Conread position: 568-758
Cow position: chrX:1427692-1427890 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 159
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 24, 144

Conread position: 568-768
Cow position: chrX:19391840-19391648 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 165
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 24, 16

Conread position: 570-765
Cow position: chrX:30784978-30785179 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 150
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 44, 100

Conread position: 601-766
Cow position: chrX:25653542-25653709 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 133
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 13, 134

Conread position: 608-757
Cow position: chrX:34035609-34035757 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 111
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 102, 110

Conread position: 610-767
Cow position: chrX:24286529-24286681 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 129
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 66, 0

Conread position: 617-752
Cow position: chrX:30729307-30729173 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 108
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 116, 0

Conread position: 617-766
Cow position: chrX:503087-502939 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 120
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 116, 0

Conread position: 631-765
Cow position: chrX:19216433-19216301 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 104
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 54, 0

Conread position: 631-766
Cow position: chrX:8557702-8557569 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 107
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 77, 87

Show alignments to all cow chromosomes.