Non-Coding RNA Search

Cow genome map


           Conread name:
           Ss1.1-Pig3-SRG8022G19.5
        

               Conread position:
               92-333
               

               Cow position:
               chr11:63166530-63166292 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               182
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               79, 19
               

               Conread position:
               94-365
               

               Cow position:
               chr11:26277456-26277190 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               185
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               19, 34
               

               Conread position:
               94-366
               

               Cow position:
               chr11:37991913-37991642 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               190, 122
               

               Conread position:
               94-513
               

               Cow position:
               chr11:42358761-42359167 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               271
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               121, 82
               

               Conread position:
               97-460
               

               Cow position:
               chr11:32431774-32432141 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               238
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               121, 30
               

               Conread position:
               99-317
               

               Cow position:
               chr11:64352078-64351862 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               158
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               115, 24
               

               Conread position:
               105-480
               

               Cow position:
               chr11:2309520-2309893 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               247
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               257, 100
               

               Conread position:
               105-622
               

               Cow position:
               chr11:27248140-27248654 (view UCSC Genome Browser custom track)
               

               Alignm length:
               529
               

               Alignm identity:
               372
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               254, 38
               

               Conread position:
               111-305
               

               Cow position:
               chr11:53147892-53147705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               144
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               65, 19
               

               Conread position:
               111-515
               

               Cow position:
               chr11:10213908-10213507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 19
               

               Conread position:
               116-461
               

               Cow position:
               chr11:70609443-70609789 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               236
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               104, 14
               

               Conread position:
               118-328
               

               Cow position:
               chr11:32218345-32218131 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               12, 55
               

               Conread position:
               119-660
               

               Cow position:
               chr11:70383040-70382480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               565
               

               Alignm identity:
               355
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               53, 103
               

               Conread position:
               121-347
               

               Cow position:
               chr11:64047977-64048204 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               159
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               51, 102
               

               Conread position:
               124-459
               

               Cow position:
               chr11:59156208-59155878 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               225
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               90, 44
               

               Conread position:
               124-478
               

               Cow position:
               chr11:37160456-37160807 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               229
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               149, 20
               

               Conread position:
               125-507
               

               Cow position:
               chr11:6835192-6835580 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               257
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               84, 18
               

               Conread position:
               126-444
               

               Cow position:
               chr11:49105722-49106041 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               220
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               64, 50
               

               Conread position:
               128-470
               

               Cow position:
               chr11:67303349-67303003 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               223
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               80, 18
               

               Conread position:
               129-513
               

               Cow position:
               chr11:35684836-35684448 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 285
               

               Conread position:
               130-328
               

               Cow position:
               chr11:13942476-13942676 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               144
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               42, 92
               

               Conread position:
               130-417
               

               Cow position:
               chr11:38843229-38843521 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               192
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               42, 274
               

               Conread position:
               130-506
               

               Cow position:
               chr11:73774393-73774778 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               239
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               42, 99
               

               Conread position:
               130-513
               

               Cow position:
               chr11:44036381-44036772 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               266
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               50, 219
               

               Conread position:
               130-628
               

               Cow position:
               chr11:8525437-8524946 (view UCSC Genome Browser custom track)
               

               Alignm length:
               507
               

               Alignm identity:
               330
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               222, 41
               

               Conread position:
               130-659
               

               Cow position:
               chr11:65827063-65826550 (view UCSC Genome Browser custom track)
               

               Alignm length:
               542
               

               Alignm identity:
               344
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               92, 47
               

               Conread position:
               132-453
               

               Cow position:
               chr11:77241047-77241365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               224
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               33, 87
               

               Conread position:
               133-328
               

               Cow position:
               chr11:39162945-39163143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               146
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               134-580
               

               Cow position:
               chr11:39654031-39653586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               74, 42
               

               Conread position:
               135-479
               

               Cow position:
               chr11:57946271-57945920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               228
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               8, 82
               

               Conread position:
               135-657
               

               Cow position:
               chr11:19487801-19487276 (view UCSC Genome Browser custom track)
               

               Alignm length:
               536
               

               Alignm identity:
               337
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               79, 33
               

               Conread position:
               139-411
               

               Cow position:
               chr11:31900723-31900998 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               196
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               38, 113
               

               Conread position:
               139-642
               

               Cow position:
               chr11:42292160-42291653 (view UCSC Genome Browser custom track)
               

               Alignm length:
               518
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 78
               

               Conread position:
               142-342
               

               Cow position:
               chr11:17891671-17891870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               145
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               52, 73
               

               Conread position:
               143-361
               

               Cow position:
               chr11:49679465-49679243 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               145-315
               

               Cow position:
               chr11:27326168-27326338 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               133
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               64, 29
               

               Conread position:
               145-492
               

               Cow position:
               chr11:6154096-6154440 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               218, 41
               

               Conread position:
               145-509
               

               Cow position:
               chr11:39140398-39140030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               245
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               79, 285
               

               Conread position:
               145-623
               

               Cow position:
               chr11:86926237-86925796 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               310
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               42, 26
               

               Conread position:
               146-299
               

               Cow position:
               chr11:10101443-10101596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               119
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               62, 25
               

               Conread position:
               146-367
               

               Cow position:
               chr11:84924410-84924191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               153
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               123, 34
               

               Conread position:
               146-395
               

               Cow position:
               chr11:46770770-46770522 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               79, 25
               

               Conread position:
               146-644
               

               Cow position:
               chr11:49152626-49153128 (view UCSC Genome Browser custom track)
               

               Alignm length:
               517
               

               Alignm identity:
               329
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               73, 133
               

               Conread position:
               147-328
               

               Cow position:
               chr11:2911135-2910958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               139
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               62, 24
               

               Conread position:
               147-366
               

               Cow position:
               chr11:30879363-30879585 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               163
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               40, 24
               

               Conread position:
               147-366
               

               Cow position:
               chr11:60302272-60302057 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               71, 27
               

               Conread position:
               147-415
               

               Cow position:
               chr11:19238471-19238201 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               187
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               73, 24
               

               Conread position:
               147-460
               

               Cow position:
               chr11:6156861-6156555 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               213
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               71, 24
               

               Conread position:
               147-506
               

               Cow position:
               chr11:16226391-16226746 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               253
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               67, 24
               

               Conread position:
               147-513
               

               Cow position:
               chr11:70619740-70620097 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               256
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               62, 74
               

               Conread position:
               147-565
               

               Cow position:
               chr11:37974611-37975043 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               288
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               63, 24
               

               Conread position:
               147-649
               

               Cow position:
               chr11:45277470-45276955 (view UCSC Genome Browser custom track)
               

               Alignm length:
               524
               

               Alignm identity:
               343
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               183, 27
               

               Conread position:
               148-328
               

               Cow position:
               chr11:18086652-18086476 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               131
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               66, 72
               

               Conread position:
               148-335
               

               Cow position:
               chr11:47566268-47566079 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               133
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               148-366
               

               Cow position:
               chr11:6639198-6639412 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               67, 23
               

               Conread position:
               148-366
               

               Cow position:
               chr11:10875708-10875928 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               64, 73
               

               Conread position:
               148-480
               

               Cow position:
               chr11:11752829-11752497 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               218
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               66, 33
               

               Conread position:
               149-366
               

               Cow position:
               chr11:37292542-37292762 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               152
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               22, 68
               

               Conread position:
               150-294
               

               Cow position:
               chr11:12762561-12762417 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               112
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               59, 21
               

               Conread position:
               150-509
               

               Cow position:
               chr11:68131022-68131387 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               231
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               22, 117
               

               Conread position:
               150-509
               

               Cow position:
               chr11:80761691-80761329 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               244
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               70, 21
               

               Conread position:
               150-662
               

               Cow position:
               chr11:21894465-21893939 (view UCSC Genome Browser custom track)
               

               Alignm length:
               539
               

               Alignm identity:
               355
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               59, 21
               

               Conread position:
               152-432
               

               Cow position:
               chr11:81066891-81066615 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               195
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               62, 24
               

               Conread position:
               152-465
               

               Cow position:
               chr11:1485670-1485354 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               226
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               61, 19
               

               Conread position:
               152-509
               

               Cow position:
               chr11:29489111-29489469 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               238
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               20, 99
               

               Conread position:
               153-328
               

               Cow position:
               chr11:39644974-39645148 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               125
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               61, 84
               

               Conread position:
               153-358
               

               Cow position:
               chr11:19098852-19098644 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               142
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               19, 106
               

               Conread position:
               153-421
               

               Cow position:
               chr11:38828903-38829168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               184
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               62, 21
               

               Conread position:
               153-471
               

               Cow position:
               chr11:28348969-28348646 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               208
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               55, 249
               

               Conread position:
               154-326
               

               Cow position:
               chr11:12528903-12528741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               130
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               154-328
               

               Cow position:
               chr11:56751689-56751521 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               133
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               60, 46
               

               Conread position:
               154-509
               

               Cow position:
               chr11:4732031-4732391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               245
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               59, 17
               

               Conread position:
               154-642
               

               Cow position:
               chr11:17860461-17859967 (view UCSC Genome Browser custom track)
               

               Alignm length:
               503
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 22
               

               Conread position:
               155-449
               

               Cow position:
               chr11:39654509-39654211 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               201
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               53, 16
               

               Conread position:
               155-455
               

               Cow position:
               chr11:29014088-29014375 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               203
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               241, 73
               

               Conread position:
               155-460
               

               Cow position:
               chr11:79995126-79994821 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               197
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               63, 16
               

               Conread position:
               155-476
               

               Cow position:
               chr11:62979171-62979506 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               238
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               68, 16
               

               Conread position:
               155-499
               

               Cow position:
               chr11:955058-955407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               246
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               62, 16
               

               Conread position:
               155-563
               

               Cow position:
               chr11:28643774-28644195 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 102
               

               Conread position:
               155-567
               

               Cow position:
               chr11:43897829-43898250 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 16
               

               Conread position:
               155-664
               

               Cow position:
               chr11:8495731-8496244 (view UCSC Genome Browser custom track)
               

               Alignm length:
               527
               

               Alignm identity:
               338
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               59, 16
               

               Conread position:
               156-449
               

               Cow position:
               chr11:58947500-58947201 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               195
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               52, 73
               

               Conread position:
               156-476
               

               Cow position:
               chr11:10076468-10076784 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               222
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               58, 104
               

               Conread position:
               157-470
               

               Cow position:
               chr11:15372089-15372406 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               206
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               51, 14
               

               Conread position:
               157-505
               

               Cow position:
               chr11:72314239-72314589 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               226
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               17, 307
               

               Conread position:
               157-506
               

               Cow position:
               chr11:84724347-84724700 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               240
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               57, 14
               

               Conread position:
               158-326
               

               Cow position:
               chr11:52464139-52464303 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               129
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               117, 13
               

               Conread position:
               158-328
               

               Cow position:
               chr11:70399556-70399724 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               124
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               158-340
               

               Cow position:
               chr11:40281773-40281587 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               133
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               158-383
               

               Cow position:
               chr11:70459270-70459490 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               162
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               51, 63
               

               Conread position:
               158-455
               

               Cow position:
               chr11:67951264-67950977 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               218
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               56, 13
               

               Conread position:
               158-622
               

               Cow position:
               chr11:63065350-63065818 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 13
               

               Conread position:
               159-318
               

               Cow position:
               chr11:2821232-2821384 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               122
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               51, 12
               

               Conread position:
               159-348
               

               Cow position:
               chr11:78480492-78480683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               156
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               53, 12
               

               Conread position:
               159-400
               

               Cow position:
               chr11:35363193-35363439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               188
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               55, 12
               

               Conread position:
               159-424
               

               Cow position:
               chr11:10800586-10800852 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               183
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               67, 12
               

               Conread position:
               159-474
               

               Cow position:
               chr11:2535336-2535661 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               211
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               49, 12
               

               Conread position:
               159-509
               

               Cow position:
               chr11:33350004-33349652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               248
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               49, 12
               

               Conread position:
               159-627
               

               Cow position:
               chr11:13061525-13061083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               472
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 32
               

               Conread position:
               159-644
               

               Cow position:
               chr11:42083181-42083641 (view UCSC Genome Browser custom track)
               

               Alignm length:
               489
               

               Alignm identity:
               322
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               168, 12
               

               Conread position:
               159-659
               

               Cow position:
               chr11:5328493-5328987 (view UCSC Genome Browser custom track)
               

               Alignm length:
               510
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               196, 12
               

               Conread position:
               159-660
               

               Cow position:
               chr11:55744171-55744673 (view UCSC Genome Browser custom track)
               

               Alignm length:
               515
               

               Alignm identity:
               329
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               56, 12
               

               Conread position:
               159-748
               

               Cow position:
               chr11:36182386-36182984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               611
               

               Alignm identity:
               397
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 12
               

               Conread position:
               160-273
               

               Cow position:
               chr11:19890580-19890693 (view UCSC Genome Browser custom track)
               

               Alignm length:
               116
               

               Alignm identity:
               94
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               19, 61
               

               Conread position:
               160-426
               

               Cow position:
               chr11:62019900-62019626 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               190
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               54, 11
               

               Conread position:
               160-451
               

               Cow position:
               chr11:58103075-58102784 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               205
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               53, 27
               

               Conread position:
               160-453
               

               Cow position:
               chr11:41269734-41269435 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               203
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               48, 11
               

               Conread position:
               160-563
               

               Cow position:
               chr11:2092046-2092435 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               275
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               233, 11
               

               Conread position:
               160-653
               

               Cow position:
               chr11:23251903-23251403 (view UCSC Genome Browser custom track)
               

               Alignm length:
               511
               

               Alignm identity:
               327
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               170, 17
               

               Conread position:
               160-658
               

               Cow position:
               chr11:85723399-85723894 (view UCSC Genome Browser custom track)
               

               Alignm length:
               511
               

               Alignm identity:
               334
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               60, 55
               

               Conread position:
               161-322
               

               Cow position:
               chr11:48484425-48484263 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               120
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               31, 60
               

               Conread position:
               161-389
               

               Cow position:
               chr11:10294297-10294514 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               161-447
               

               Cow position:
               chr11:56886478-56886188 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               196
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               47, 10
               

               Conread position:
               161-449
               

               Cow position:
               chr11:77011432-77011138 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               199
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               13, 80
               

               Conread position:
               161-452
               

               Cow position:
               chr11:65857557-65857852 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               203
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               57, 10
               

               Conread position:
               161-563
               

               Cow position:
               chr11:44576040-44575645 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               278
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               28, 136
               

               Conread position:
               162-306
               

               Cow position:
               chr11:71391905-71391765 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               115
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               162-307
               

               Cow position:
               chr11:3797110-3797256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               110
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               60, 9
               

               Conread position:
               162-317
               

               Cow position:
               chr11:6644921-6645075 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               117
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               56, 9
               

               Conread position:
               162-318
               

               Cow position:
               chr11:6633089-6633240 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               117
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               53, 15
               

               Conread position:
               162-325
               

               Cow position:
               chr11:16547300-16547138 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               122
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               47, 9
               

               Conread position:
               162-326
               

               Cow position:
               chr11:7120324-7120160 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               117
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               56, 9
               

               Conread position:
               162-326
               

               Cow position:
               chr11:81279197-81279361 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               122
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               47, 9
               

               Conread position:
               162-326
               

               Cow position:
               chr11:81551483-81551322 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               122
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               52, 9
               

               Conread position:
               162-328
               

               Cow position:
               chr11:10545690-10545856 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               132
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               46, 9
               

               Conread position:
               162-328
               

               Cow position:
               chr11:23572369-23572199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               129
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               41, 9
               

               Conread position:
               162-330
               

               Cow position:
               chr11:63149725-63149558 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               120
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               64, 9
               

               Conread position:
               162-339
               

               Cow position:
               chr11:49873126-49873302 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               58, 9
               

               Conread position:
               162-340
               

               Cow position:
               chr11:40402132-40401953 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               129
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               47, 9
               

               Conread position:
               162-341
               

               Cow position:
               chr11:75286707-75286529 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               135
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               52, 9
               

               Conread position:
               162-348
               

               Cow position:
               chr11:3303537-3303719 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               145
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               56, 9
               

               Conread position:
               162-350
               

               Cow position:
               chr11:3238950-3239139 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               131
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               56, 9
               

               Conread position:
               162-350
               

               Cow position:
               chr11:40138926-40138737 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               135
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               46, 9
               

               Conread position:
               162-350
               

               Cow position:
               chr11:64382298-64382487 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               66, 9
               

               Conread position:
               162-365
               

               Cow position:
               chr11:37118185-37118390 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               162
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               58, 9
               

               Conread position:
               162-366
               

               Cow position:
               chr11:21472626-21472420 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               147
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               47, 9
               

               Conread position:
               162-366
               

               Cow position:
               chr11:30000311-30000517 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               46, 9
               

               Conread position:
               162-366
               

               Cow position:
               chr11:37995429-37995227 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               122, 9
               

               Conread position:
               162-367
               

               Cow position:
               chr11:24967166-24967357 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               151
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               52, 9
               

               Conread position:
               162-367
               

               Cow position:
               chr11:71705702-71705496 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               143
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               168, 9
               

               Conread position:
               162-370
               

               Cow position:
               chr11:84774818-84775012 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               168, 9
               

               Conread position:
               162-394
               

               Cow position:
               chr11:31437298-31437060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               163
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               52, 9
               

               Conread position:
               162-394
               

               Cow position:
               chr11:41809776-41809546 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               167
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               174, 9
               

               Conread position:
               162-399
               

               Cow position:
               chr11:50111892-50112129 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               187
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               47, 9
               

               Conread position:
               162-400
               

               Cow position:
               chr11:71846648-71846405 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               188
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               49, 9
               

               Conread position:
               162-411
               

               Cow position:
               chr11:26256695-26256454 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               168
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               85, 9
               

               Conread position:
               162-416
               

               Cow position:
               chr11:41577304-41577058 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               182
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               188, 9
               

               Conread position:
               162-420
               

               Cow position:
               chr11:5425261-5425523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               46, 9
               

               Conread position:
               162-420
               

               Cow position:
               chr11:42411208-42411470 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               46, 9
               

               Conread position:
               162-424
               

               Cow position:
               chr11:39032786-39033052 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               181
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               56, 9
               

               Conread position:
               162-431
               

               Cow position:
               chr11:12177557-12177284 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               184
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               59, 9
               

               Conread position:
               162-432
               

               Cow position:
               chr11:44356251-44355976 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               184
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               46, 9
               

               Conread position:
               162-432
               

               Cow position:
               chr11:50497193-50497464 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               182
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               46, 9
               

               Conread position:
               162-432
               

               Cow position:
               chr11:57760501-57760774 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               188
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               46, 9
               

               Conread position:
               162-432
               

               Cow position:
               chr11:61891648-61891922 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               186
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               46, 9
               

               Conread position:
               162-432
               

               Cow position:
               chr11:72016253-72015979 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               190
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               46, 12
               

               Conread position:
               162-443
               

               Cow position:
               chr11:25319751-25320039 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               212
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 9
               

               Conread position:
               162-447
               

               Cow position:
               chr11:61876467-61876753 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               168, 9
               

               Conread position:
               162-449
               

               Cow position:
               chr11:1133634-1133343 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               188
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               46, 9
               

               Conread position:
               162-449
               

               Cow position:
               chr11:7555592-7555883 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               191
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               46, 9
               

               Conread position:
               162-449
               

               Cow position:
               chr11:11230904-11230616 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               196
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               46, 9
               

               Conread position:
               162-449
               

               Cow position:
               chr11:12372738-12373029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               193
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               46, 9
               

               Conread position:
               162-449
               

               Cow position:
               chr11:15048107-15048398 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               197
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               46, 9
               

               Conread position:
               162-449
               

               Cow position:
               chr11:17077712-17078003 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               193
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               46, 9
               

               Conread position:
               162-449
               

               Cow position:
               chr11:20730577-20730289 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               190
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               47, 9
               

               Conread position:
               162-449
               

               Cow position:
               chr11:23979540-23979831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               200
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               46, 9
               

               Conread position:
               162-449
               

               Cow position:
               chr11:24145819-24146111 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               201
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               46, 9
               

               Conread position:
               162-449
               

               Cow position:
               chr11:38021306-38021015 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               190
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               52, 12
               

               Conread position:
               162-449
               

               Cow position:
               chr11:38818848-38818557 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               194
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               46, 9
               

               Conread position:
               162-449
               

               Cow position:
               chr11:41040995-41040704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               193
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               46, 9
               

               Conread position:
               162-449
               

               Cow position:
               chr11:41261818-41262109 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               195
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               46, 12
               

               Conread position:
               162-449
               

               Cow position:
               chr11:41422132-41421841 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               196
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               46, 9
               

               Conread position:
               162-449
               

               Cow position:
               chr11:47572874-47572583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               197
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               46, 9
               

               Conread position:
               162-449
               

               Cow position:
               chr11:47846640-47846930 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               198
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               46, 9
               

               Conread position:
               162-449
               

               Cow position:
               chr11:48109560-48109850 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               195
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               46, 9
               

               Conread position:
               162-449
               

               Cow position:
               chr11:48885350-48885641 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               194
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               46, 9
               

               Conread position:
               162-449
               

               Cow position:
               chr11:54303208-54303499 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               196
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               46, 9
               

               Conread position:
               162-449
               

               Cow position:
               chr11:56827251-56827542 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               196
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               46, 12
               

               Conread position:
               162-449
               

               Cow position:
               chr11:61059910-61059619 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               195
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               46, 9
               

               Conread position:
               162-449
               

               Cow position:
               chr11:66893339-66893048 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               192
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               46, 9
               

               Conread position:
               162-449
               

               Cow position:
               chr11:75222593-75222880 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               196
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               46, 9
               

               Conread position:
               162-449
               

               Cow position:
               chr11:75285021-75284732 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               197
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               65, 9
               

               Conread position:
               162-449
               

               Cow position:
               chr11:81360087-81360376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               196
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               46, 9
               

               Conread position:
               162-450
               

               Cow position:
               chr11:10948772-10948480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               194
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               56, 9
               

               Conread position:
               162-453
               

               Cow position:
               chr11:4597217-4597515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               199
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               46, 9
               

               Conread position:
               162-453
               

               Cow position:
               chr11:47655442-47655739 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               197
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               52, 9
               

               Conread position:
               162-453
               

               Cow position:
               chr11:74389704-74390001 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               201
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               46, 9
               

               Conread position:
               162-454
               

               Cow position:
               chr11:15560060-15559764 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               192
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               46, 9
               

               Conread position:
               162-454
               

               Cow position:
               chr11:33146796-33146500 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               194
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               46, 12
               

               Conread position:
               162-454
               

               Cow position:
               chr11:41163980-41163684 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               195
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               46, 9
               

               Conread position:
               162-454
               

               Cow position:
               chr11:41234140-41233844 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               196
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               46, 9
               

               Conread position:
               162-454
               

               Cow position:
               chr11:46142339-46142042 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               197
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               46, 12
               

               Conread position:
               162-454
               

               Cow position:
               chr11:57253974-57254270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               196
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               46, 9
               

               Conread position:
               162-455
               

               Cow position:
               chr11:17112926-17112637 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               217
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               46, 9
               

               Conread position:
               162-459
               

               Cow position:
               chr11:37068603-37068318 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               206
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               28, 9
               

               Conread position:
               162-463
               

               Cow position:
               chr11:50197744-50197430 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               233
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               60, 9
               

               Conread position:
               162-464
               

               Cow position:
               chr11:41239571-41239265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               216
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               168, 9
               

               Conread position:
               162-465
               

               Cow position:
               chr11:6594547-6594247 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               211
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               168, 9
               

               Conread position:
               162-470
               

               Cow position:
               chr11:2772986-2773298 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               208
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               46, 9
               

               Conread position:
               162-470
               

               Cow position:
               chr11:5278845-5278533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               205
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               46, 9
               

               Conread position:
               162-470
               

               Cow position:
               chr11:5895253-5894941 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               203
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               46, 9
               

               Conread position:
               162-470
               

               Cow position:
               chr11:16088697-16089009 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               204
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               46, 9
               

               Conread position:
               162-470
               

               Cow position:
               chr11:17549808-17550120 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               204
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               46, 9
               

               Conread position:
               162-470
               

               Cow position:
               chr11:18097868-18097556 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               203
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               46, 9
               

               Conread position:
               162-470
               

               Cow position:
               chr11:23773904-23774216 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               210
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               46, 9
               

               Conread position:
               162-470
               

               Cow position:
               chr11:24136848-24137160 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               204
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               47, 9
               

               Conread position:
               162-470
               

               Cow position:
               chr11:24334412-24334724 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               207
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               46, 9
               

               Conread position:
               162-470
               

               Cow position:
               chr11:41161847-41161535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               204
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               46, 9
               

               Conread position:
               162-470
               

               Cow position:
               chr11:52895705-52896015 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               203
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               46, 9
               

               Conread position:
               162-470
               

               Cow position:
               chr11:54580520-54580832 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               204
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               46, 9
               

               Conread position:
               162-470
               

               Cow position:
               chr11:63185849-63185537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               208
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               46, 9
               

               Conread position:
               162-470
               

               Cow position:
               chr11:72050641-72050953 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               212
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               46, 9
               

               Conread position:
               162-471
               

               Cow position:
               chr11:66529883-66529570 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               208
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               46, 9
               

               Conread position:
               162-474
               

               Cow position:
               chr11:2422117-2422432 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               215
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               47, 9
               

               Conread position:
               162-474
               

               Cow position:
               chr11:5224806-5225122 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               199
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               46, 9
               

               Conread position:
               162-474
               

               Cow position:
               chr11:21929472-21929155 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               203
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               58, 9
               

               Conread position:
               162-474
               

               Cow position:
               chr11:34278732-34279048 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               210
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               47, 9
               

               Conread position:
               162-474
               

               Cow position:
               chr11:36167108-36166794 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               206
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               46, 9
               

               Conread position:
               162-474
               

               Cow position:
               chr11:36198723-36199039 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               207
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               52, 9
               

               Conread position:
               162-474
               

               Cow position:
               chr11:38573835-38573517 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               208
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               46, 9
               

               Conread position:
               162-474
               

               Cow position:
               chr11:38599074-38598758 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               210
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               47, 9
               

               Conread position:
               162-474
               

               Cow position:
               chr11:44514713-44514397 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               208
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               47, 9
               

               Conread position:
               162-474
               

               Cow position:
               chr11:56051455-56051772 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               209
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               46, 9
               

               Conread position:
               162-474
               

               Cow position:
               chr11:58137361-58137677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               202
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               46, 9
               

               Conread position:
               162-474
               

               Cow position:
               chr11:58883884-58883561 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               211
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               46, 9
               

               Conread position:
               162-474
               

               Cow position:
               chr11:60629240-60628924 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               212
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               46, 9
               

               Conread position:
               162-474
               

               Cow position:
               chr11:67454588-67454903 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               209
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               47, 9
               

               Conread position:
               162-474
               

               Cow position:
               chr11:84184431-84184748 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               212
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               46, 12
               

               Conread position:
               162-474
               

               Cow position:
               chr11:84967757-84968073 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               206
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               46, 9
               

               Conread position:
               162-475
               

               Cow position:
               chr11:8339704-8339391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               218
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               47, 9
               

               Conread position:
               162-477
               

               Cow position:
               chr11:29614996-29615307 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               205
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               47, 9
               

               Conread position:
               162-479
               

               Cow position:
               chr11:9235516-9235193 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               214
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               47, 9
               

               Conread position:
               162-479
               

               Cow position:
               chr11:21626036-21625715 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               207
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               47, 9
               

               Conread position:
               162-479
               

               Cow position:
               chr11:24045304-24044983 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               217
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               46, 9
               

               Conread position:
               162-479
               

               Cow position:
               chr11:30088526-30088847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               213
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               46, 12
               

               Conread position:
               162-479
               

               Cow position:
               chr11:33012591-33012915 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               207
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               64, 9
               

               Conread position:
               162-479
               

               Cow position:
               chr11:44834303-44834624 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               207
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               45, 9
               

               Conread position:
               162-481
               

               Cow position:
               chr11:35141686-35141363 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               213
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               47, 9
               

               Conread position:
               162-486
               

               Cow position:
               chr11:28620270-28620598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               187
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               46, 12
               

               Conread position:
               162-490
               

               Cow position:
               chr11:81174591-81174915 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               236
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               52, 9
               

               Conread position:
               162-506
               

               Cow position:
               chr11:64082222-64082573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               202
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               46, 9
               

               Conread position:
               162-507
               

               Cow position:
               chr11:33294091-33293732 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               249
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               46, 9
               

               Conread position:
               162-509
               

               Cow position:
               chr11:4323067-4323407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               242
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               47, 9
               

               Conread position:
               162-509
               

               Cow position:
               chr11:32749808-32750159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               240
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               46, 9
               

               Conread position:
               162-509
               

               Cow position:
               chr11:40467423-40467075 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               248
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               47, 9
               

               Conread position:
               162-509
               

               Cow position:
               chr11:41812211-41811866 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               246
               

               Alignm E-value:
               7.9874e-44
               

               Alignm gaps (pig, cow):
               47, 9
               

               Conread position:
               162-509
               

               Cow position:
               chr11:80788210-80787858 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               240
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               47, 9
               

               Conread position:
               162-509
               

               Cow position:
               chr11:87147567-87147216 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               231
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               47, 9
               

               Conread position:
               162-511
               

               Cow position:
               chr11:44234058-44234406 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 9
               

               Conread position:
               162-512
               

               Cow position:
               chr11:40793000-40792653 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               235
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               47, 9
               

               Conread position:
               162-512
               

               Cow position:
               chr11:76114353-76114698 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               240
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               21, 9
               

               Conread position:
               162-513
               

               Cow position:
               chr11:1849463-1849118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               250
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               56, 9
               

               Conread position:
               162-513
               

               Cow position:
               chr11:27939187-27939536 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               237
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               60, 9
               

               Conread position:
               162-513
               

               Cow position:
               chr11:77751065-77750719 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               245
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               179, 9
               

               Conread position:
               162-515
               

               Cow position:
               chr11:30120962-30120607 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               252
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               55, 9
               

               Conread position:
               162-516
               

               Cow position:
               chr11:37278498-37278168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               234
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               162-523
               

               Cow position:
               chr11:61454834-61454454 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               263
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               53, 9
               

               Conread position:
               162-524
               

               Cow position:
               chr11:34962763-34963133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               259
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               52, 9
               

               Conread position:
               162-526
               

               Cow position:
               chr11:48271896-48272266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 9
               

               Conread position:
               162-526
               

               Cow position:
               chr11:81576053-81575684 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               231
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               10, 127
               

               Conread position:
               162-538
               

               Cow position:
               chr11:32595167-32595534 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               265
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               58, 9
               

               Conread position:
               162-551
               

               Cow position:
               chr11:20601940-20602313 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               267
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               60, 9
               

               Conread position:
               162-561
               

               Cow position:
               chr11:1071393-1070985 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 9
               

               Conread position:
               162-562
               

               Cow position:
               chr11:15285917-15285508 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 9
               

               Conread position:
               162-563
               

               Cow position:
               chr11:54334033-54334436 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               280
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               14, 60
               

               Conread position:
               162-565
               

               Cow position:
               chr11:58990211-58990601 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               270
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               51, 9
               

               Conread position:
               162-565
               

               Cow position:
               chr11:67746978-67747393 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 9
               

               Conread position:
               162-589
               

               Cow position:
               chr11:33413934-33414372 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 9
               

               Conread position:
               162-600
               

               Cow position:
               chr11:3393509-3393069 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 9
               

               Conread position:
               162-600
               

               Cow position:
               chr11:26067479-26067040 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               287
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               52, 9
               

               Conread position:
               162-600
               

               Cow position:
               chr11:71868903-71868458 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               299
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               48, 9
               

               Conread position:
               162-619
               

               Cow position:
               chr11:3780724-3780252 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               317
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               47, 9
               

               Conread position:
               162-625
               

               Cow position:
               chr11:4674751-4674275 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               313
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               47, 59
               

               Conread position:
               162-627
               

               Cow position:
               chr11:67345944-67345488 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               304
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               58, 9
               

               Conread position:
               162-627
               

               Cow position:
               chr11:70484161-70483680 (view UCSC Genome Browser custom track)
               

               Alignm length:
               485
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 9
               

               Conread position:
               162-627
               

               Cow position:
               chr11:77705465-77705921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               304
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               60, 14
               

               Conread position:
               162-628
               

               Cow position:
               chr11:10095043-10095515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 9
               

               Conread position:
               162-628
               

               Cow position:
               chr11:36981267-36981737 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               309
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               46, 59
               

               Conread position:
               162-638
               

               Cow position:
               chr11:26535475-26535966 (view UCSC Genome Browser custom track)
               

               Alignm length:
               499
               

               Alignm identity:
               323
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               14, 19
               

               Conread position:
               162-647
               

               Cow position:
               chr11:4206999-4207502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               511
               

               Alignm identity:
               324
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               58, 9
               

               Conread position:
               162-649
               

               Cow position:
               chr11:40818944-40818439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               516
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 9
               

               Conread position:
               162-655
               

               Cow position:
               chr11:80923635-80923127 (view UCSC Genome Browser custom track)
               

               Alignm length:
               517
               

               Alignm identity:
               357
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 12
               

               Conread position:
               162-657
               

               Cow position:
               chr11:15503802-15504312 (view UCSC Genome Browser custom track)
               

               Alignm length:
               519
               

               Alignm identity:
               334
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               58, 9
               

               Conread position:
               162-657
               

               Cow position:
               chr11:52297523-52297025 (view UCSC Genome Browser custom track)
               

               Alignm length:
               507
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 9
               

               Conread position:
               162-660
               

               Cow position:
               chr11:48672409-48672920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               527
               

               Alignm identity:
               350
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               168, 9
               

               Conread position:
               162-660
               

               Cow position:
               chr11:54856335-54856811 (view UCSC Genome Browser custom track)
               

               Alignm length:
               504
               

               Alignm identity:
               318
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               46, 9
               

               Conread position:
               162-667
               

               Cow position:
               chr11:40458821-40459318 (view UCSC Genome Browser custom track)
               

               Alignm length:
               517
               

               Alignm identity:
               327
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               53, 9
               

               Conread position:
               162-672
               

               Cow position:
               chr11:1486168-1485652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               537
               

               Alignm identity:
               351
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               53, 9
               

               Conread position:
               162-683
               

               Cow position:
               chr11:27497170-27497702 (view UCSC Genome Browser custom track)
               

               Alignm length:
               537
               

               Alignm identity:
               241
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               46, 9
               

               Conread position:
               163-291
               

               Cow position:
               chr11:67847989-67847860 (view UCSC Genome Browser custom track)
               

               Alignm length:
               131
               

               Alignm identity:
               101
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               51, 63
               

               Conread position:
               163-305
               

               Cow position:
               chr11:27907253-27907392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               108
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               59, 120
               

               Conread position:
               163-328
               

               Cow position:
               chr11:35506576-35506737 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               121
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               59, 108
               

               Conread position:
               163-328
               

               Cow position:
               chr11:55117174-55117339 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               142
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               46, 8
               

               Conread position:
               163-331
               

               Cow position:
               chr11:68570971-68570807 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               134
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               55, 96
               

               Conread position:
               163-334
               

               Cow position:
               chr11:53307260-53307085 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               128
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               51, 156
               

               Conread position:
               163-364
               

               Cow position:
               chr11:6620591-6620385 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               147
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               163-364
               

               Cow position:
               chr11:35238529-35238734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               163-366
               

               Cow position:
               chr11:53719646-53719845 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               137, 0
               

               Conread position:
               163-401
               

               Cow position:
               chr11:46451319-46451548 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               166
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               166, 75
               

               Conread position:
               163-412
               

               Cow position:
               chr11:51756016-51756261 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               177
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               35, 58
               

               Conread position:
               163-413
               

               Cow position:
               chr11:65694135-65693886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               178
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               183, 8
               

               Conread position:
               163-416
               

               Cow position:
               chr11:41599026-41598768 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               191
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               57, 8
               

               Conread position:
               163-420
               

               Cow position:
               chr11:28597274-28597020 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               182
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               74, 24
               

               Conread position:
               163-442
               

               Cow position:
               chr11:62750049-62749774 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               212
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               195, 0
               

               Conread position:
               163-443
               

               Cow position:
               chr11:3704021-3704287 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               202
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               233, 127
               

               Conread position:
               163-444
               

               Cow position:
               chr11:9837399-9837114 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               201
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               20, 8
               

               Conread position:
               163-449
               

               Cow position:
               chr11:56623072-56623363 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               195
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               45, 66
               

               Conread position:
               163-470
               

               Cow position:
               chr11:68136843-68137155 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               204
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               45, 66
               

               Conread position:
               163-471
               

               Cow position:
               chr11:69332438-69332127 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               206
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               45, 13
               

               Conread position:
               163-474
               

               Cow position:
               chr11:15496037-15496353 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               208
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               45, 66
               

               Conread position:
               163-480
               

               Cow position:
               chr11:27386638-27386319 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               222
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               59, 8
               

               Conread position:
               163-509
               

               Cow position:
               chr11:21437330-21437674 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               215
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               167, 8
               

               Conread position:
               163-509
               

               Cow position:
               chr11:36848643-36848965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               234
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               167, 52
               

               Conread position:
               163-512
               

               Cow position:
               chr11:36986663-36987001 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               251
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               57, 8
               

               Conread position:
               163-513
               

               Cow position:
               chr11:46746336-46746686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               249
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               22, 14
               

               Conread position:
               163-513
               

               Cow position:
               chr11:73924858-73924509 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 110
               

               Conread position:
               163-516
               

               Cow position:
               chr11:58588044-58588400 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 214
               

               Conread position:
               163-565
               

               Cow position:
               chr11:23232812-23232412 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               274
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               59, 24
               

               Conread position:
               163-616
               

               Cow position:
               chr11:39499077-39499515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               313
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               59, 93
               

               Conread position:
               163-627
               

               Cow position:
               chr11:35579953-35580432 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 422
               

               Conread position:
               163-627
               

               Cow position:
               chr11:43361099-43360616 (view UCSC Genome Browser custom track)
               

               Alignm length:
               497
               

               Alignm identity:
               331
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               68, 8
               

               Conread position:
               163-627
               

               Cow position:
               chr11:50153116-50152642 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 8
               

               Conread position:
               163-638
               

               Cow position:
               chr11:64043950-64044399 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               325
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               195, 8
               

               Conread position:
               163-653
               

               Cow position:
               chr11:53778314-53778817 (view UCSC Genome Browser custom track)
               

               Alignm length:
               507
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 8
               

               Conread position:
               163-655
               

               Cow position:
               chr11:44031700-44032204 (view UCSC Genome Browser custom track)
               

               Alignm length:
               512
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 423
               

               Conread position:
               163-657
               

               Cow position:
               chr11:18698574-18699071 (view UCSC Genome Browser custom track)
               

               Alignm length:
               505
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 261
               

               Conread position:
               164-328
               

               Cow position:
               chr11:18140943-18141105 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               127
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               130, 52
               

               Conread position:
               164-335
               

               Cow position:
               chr11:40250899-40250731 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               132
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               50, 56
               

               Conread position:
               164-367
               

               Cow position:
               chr11:62376736-62376533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               155
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               7, 57
               

               Conread position:
               164-367
               

               Cow position:
               chr11:65970155-65970362 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               7, 52
               

               Conread position:
               164-407
               

               Cow position:
               chr11:73478325-73478567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               172
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               188, 55
               

               Conread position:
               164-432
               

               Cow position:
               chr11:3998880-3998606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               181
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               10, 240
               

               Conread position:
               164-454
               

               Cow position:
               chr11:43369696-43369402 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               198
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               44, 10
               

               Conread position:
               164-460
               

               Cow position:
               chr11:3175082-3175382 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               195
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               166, 7
               

               Conread position:
               164-469
               

               Cow position:
               chr11:4412318-4412013 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               227
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               50, 228
               

               Conread position:
               164-510
               

               Cow position:
               chr11:61427316-61427644 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               225
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               318, 83
               

               Conread position:
               164-638
               

               Cow position:
               chr11:64029554-64029085 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               309
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               167, 118
               

               Conread position:
               164-645
               

               Cow position:
               chr11:45282638-45283116 (view UCSC Genome Browser custom track)
               

               Alignm length:
               495
               

               Alignm identity:
               312
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               54, 112
               

               Conread position:
               164-665
               

               Cow position:
               chr11:14649611-14649100 (view UCSC Genome Browser custom track)
               

               Alignm length:
               523
               

               Alignm identity:
               337
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               45, 57
               

               Conread position:
               165-305
               

               Cow position:
               chr11:59959275-59959135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               112
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               49, 6
               

               Conread position:
               165-325
               

               Cow position:
               chr11:18912965-18913126 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               128
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               8, 56
               

               Conread position:
               165-328
               

               Cow position:
               chr11:18117989-18118154 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               120
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               165-328
               

               Cow position:
               chr11:36315301-36315465 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               120
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               7, 145
               

               Conread position:
               165-332
               

               Cow position:
               chr11:25745023-25745187 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               123
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               9, 67
               

               Conread position:
               165-337
               

               Cow position:
               chr11:14259315-14259143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               124
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               9, 46
               

               Conread position:
               165-352
               

               Cow position:
               chr11:74746470-74746661 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               165-365
               

               Cow position:
               chr11:4384326-4384522 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               147
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               11, 58
               

               Conread position:
               165-365
               

               Cow position:
               chr11:19787849-19788038 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               145
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               50, 6
               

               Conread position:
               165-366
               

               Cow position:
               chr11:4474775-4474573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               144
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               7, 139
               

               Conread position:
               165-366
               

               Cow position:
               chr11:55347966-55348168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               148
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               44, 6
               

               Conread position:
               165-366
               

               Cow position:
               chr11:58600564-58600766 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               141
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               65, 12
               

               Conread position:
               165-411
               

               Cow position:
               chr11:7298682-7298438 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               169
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               7, 57
               

               Conread position:
               165-415
               

               Cow position:
               chr11:34412800-34413054 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               185
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               55, 6
               

               Conread position:
               165-415
               

               Cow position:
               chr11:53313865-53313617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               172
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               61, 6
               

               Conread position:
               165-420
               

               Cow position:
               chr11:32076441-32076181 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               7, 238
               

               Conread position:
               165-425
               

               Cow position:
               chr11:63157210-63156943 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               184
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               52, 6
               

               Conread position:
               165-427
               

               Cow position:
               chr11:58123571-58123832 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               9, 138
               

               Conread position:
               165-428
               

               Cow position:
               chr11:36459517-36459783 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               177
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               66, 224
               

               Conread position:
               165-450
               

               Cow position:
               chr11:66943257-66942975 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               196
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               7, 58
               

               Conread position:
               165-459
               

               Cow position:
               chr11:53452642-53452346 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               208
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               53, 6
               

               Conread position:
               165-471
               

               Cow position:
               chr11:53130516-53130824 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               222
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               49, 6
               

               Conread position:
               165-477
               

               Cow position:
               chr11:68631994-68631675 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               214
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               7, 209
               

               Conread position:
               165-480
               

               Cow position:
               chr11:22342104-22341783 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               207
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               7, 216
               

               Conread position:
               165-482
               

               Cow position:
               chr11:37284994-37284670 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               205
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               7, 239
               

               Conread position:
               165-506
               

               Cow position:
               chr11:21856660-21857009 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               227
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               11, 244
               

               Conread position:
               165-509
               

               Cow position:
               chr11:3719955-3720302 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               234
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               53, 6
               

               Conread position:
               165-509
               

               Cow position:
               chr11:8563449-8563100 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               231
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               7, 235
               

               Conread position:
               165-509
               

               Cow position:
               chr11:8564274-8563914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               236
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               7, 272
               

               Conread position:
               165-509
               

               Cow position:
               chr11:26483420-26483760 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               243
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               7, 102
               

               Conread position:
               165-509
               

               Cow position:
               chr11:33600987-33600637 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               222
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               7, 208
               

               Conread position:
               165-509
               

               Cow position:
               chr11:36309709-36309364 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               228
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               29, 64
               

               Conread position:
               165-513
               

               Cow position:
               chr11:17278960-17278623 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               244
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               11, 56
               

               Conread position:
               165-515
               

               Cow position:
               chr11:36202934-36203292 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               227
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               11, 101
               

               Conread position:
               165-516
               

               Cow position:
               chr11:33256020-33255655 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               228
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               7, 75
               

               Conread position:
               165-517
               

               Cow position:
               chr11:3833647-3833306 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               244
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               7, 58
               

               Conread position:
               165-562
               

               Cow position:
               chr11:39115198-39115590 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 22
               

               Conread position:
               165-565
               

               Cow position:
               chr11:7924885-7924484 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               278
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               50, 11
               

               Conread position:
               165-625
               

               Cow position:
               chr11:32198641-32199112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               319
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               8, 144
               

               Conread position:
               165-627
               

               Cow position:
               chr11:38638826-38639270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               204, 6
               

               Conread position:
               165-630
               

               Cow position:
               chr11:63469586-63470031 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               314
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               207, 119
               

               Conread position:
               165-659
               

               Cow position:
               chr11:15467170-15467647 (view UCSC Genome Browser custom track)
               

               Alignm length:
               499
               

               Alignm identity:
               320
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               7, 135
               

               Conread position:
               165-659
               

               Cow position:
               chr11:83357096-83357602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               517
               

               Alignm identity:
               337
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               44, 6
               

               Conread position:
               165-660
               

               Cow position:
               chr11:46329200-46329702 (view UCSC Genome Browser custom track)
               

               Alignm length:
               516
               

               Alignm identity:
               332
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               7, 102
               

               Conread position:
               165-661
               

               Cow position:
               chr11:14361950-14361447 (view UCSC Genome Browser custom track)
               

               Alignm length:
               513
               

               Alignm identity:
               311
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               7, 252
               

               Conread position:
               165-663
               

               Cow position:
               chr11:42836259-42835746 (view UCSC Genome Browser custom track)
               

               Alignm length:
               523
               

               Alignm identity:
               337
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               52, 6
               

               Conread position:
               165-669
               

               Cow position:
               chr11:31413151-31413666 (view UCSC Genome Browser custom track)
               

               Alignm length:
               528
               

               Alignm identity:
               336
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               7, 127
               

               Conread position:
               165-677
               

               Cow position:
               chr11:34615969-34616483 (view UCSC Genome Browser custom track)
               

               Alignm length:
               531
               

               Alignm identity:
               342
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               7, 113
               

               Conread position:
               165-721
               

               Cow position:
               chr11:77759056-77758507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               573
               

               Alignm identity:
               365
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               42, 6
               

               Conread position:
               166-328
               

               Cow position:
               chr11:29608467-29608304 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               123
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               166-431
               

               Cow position:
               chr11:69992555-69992286 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               183
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               42, 63
               

               Conread position:
               167-512
               

               Cow position:
               chr11:77766896-77766543 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               234
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               15, 69
               

               Conread position:
               167-529
               

               Cow position:
               chr11:70273006-70273378 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               253
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               162, 133
               

               Conread position:
               169-327
               

               Cow position:
               chr11:49074587-49074428 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               123
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               51, 91
               

               Conread position:
               169-350
               

               Cow position:
               chr11:64087740-64087920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               45, 52
               

               Conread position:
               169-396
               

               Cow position:
               chr11:7315420-7315191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               166
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               53, 105
               

               Conread position:
               169-497
               

               Cow position:
               chr11:65430771-65431091 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               192, 46
               

               Conread position:
               169-507
               

               Cow position:
               chr11:13190926-13191281 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               239
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               169-510
               

               Cow position:
               chr11:5032071-5031726 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               230
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               5, 255
               

               Conread position:
               169-529
               

               Cow position:
               chr11:81337266-81336913 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               242
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               53, 161
               

               Conread position:
               169-599
               

               Cow position:
               chr11:80820292-80819876 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               294
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               43, 52
               

               Conread position:
               170-327
               

               Cow position:
               chr11:49056883-49057039 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               119
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               45, 143
               

               Conread position:
               170-328
               

               Cow position:
               chr11:68750941-68750783 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               114
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               52, 15
               

               Conread position:
               170-331
               

               Cow position:
               chr11:12555710-12555552 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               120
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               170-395
               

               Cow position:
               chr11:3769582-3769355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               163
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               50, 132
               

               Conread position:
               170-421
               

               Cow position:
               chr11:74929488-74929745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               183
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               44, 50
               

               Conread position:
               170-443
               

               Cow position:
               chr11:64334565-64334834 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               196
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               52, 108
               

               Conread position:
               170-447
               

               Cow position:
               chr11:43913930-43914202 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               193
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               161, 101
               

               Conread position:
               170-454
               

               Cow position:
               chr11:17968868-17968588 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 54
               

               Conread position:
               170-504
               

               Cow position:
               chr11:16910661-16910315 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               239
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               31, 242
               

               Conread position:
               170-506
               

               Cow position:
               chr11:28848269-28847933 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               222
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               56, 88
               

               Conread position:
               170-509
               

               Cow position:
               chr11:5197370-5197026 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               229
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               44, 51
               

               Conread position:
               170-513
               

               Cow position:
               chr11:18572511-18572853 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               229
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               59, 132
               

               Conread position:
               170-513
               

               Cow position:
               chr11:56518605-56518257 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               240
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               45, 297
               

               Conread position:
               170-520
               

               Cow position:
               chr11:59702192-59702546 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               250
               

               Alignm E-value:
               7.9874e-44
               

               Alignm gaps (pig, cow):
               43, 50
               

               Conread position:
               170-611
               

               Cow position:
               chr11:87155220-87155676 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               302
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               48, 75
               

               Conread position:
               170-639
               

               Cow position:
               chr11:46748161-46747676 (view UCSC Genome Browser custom track)
               

               Alignm length:
               488
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 161
               

               Conread position:
               170-660
               

               Cow position:
               chr11:5418556-5418058 (view UCSC Genome Browser custom track)
               

               Alignm length:
               506
               

               Alignm identity:
               316
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               42, 50
               

               Conread position:
               170-679
               

               Cow position:
               chr11:50236261-50235770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               520
               

               Alignm identity:
               325
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               50, 120
               

               Conread position:
               170-679
               

               Cow position:
               chr11:59902598-59903115 (view UCSC Genome Browser custom track)
               

               Alignm length:
               523
               

               Alignm identity:
               329
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               160, 46
               

               Conread position:
               170-687
               

               Cow position:
               chr11:25791985-25791460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               534
               

               Alignm identity:
               344
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               48, 133
               

               Conread position:
               171-424
               

               Cow position:
               chr11:21621088-21621348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               176
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               46, 211
               

               Conread position:
               172-455
               

               Cow position:
               chr11:41983737-41983462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               195
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               50, 111
               

               Conread position:
               173-326
               

               Cow position:
               chr11:16900975-16901129 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               112
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               173-326
               

               Cow position:
               chr11:76768076-76768229 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               117
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               41, 48
               

               Conread position:
               173-327
               

               Cow position:
               chr11:32254605-32254458 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               118
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               49, 101
               

               Conread position:
               173-328
               

               Cow position:
               chr11:70838592-70838439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               120
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               45, 127
               

               Conread position:
               173-333
               

               Cow position:
               chr11:6046860-6046700 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               119
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               41, 47
               

               Conread position:
               173-335
               

               Cow position:
               chr11:64845357-64845518 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               118
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               55, 9
               

               Conread position:
               173-347
               

               Cow position:
               chr11:53262481-53262657 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               131
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               38, 63
               

               Conread position:
               173-352
               

               Cow position:
               chr11:62821623-62821442 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               125
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               173-366
               

               Cow position:
               chr11:36899575-36899381 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               134
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               41, 53
               

               Conread position:
               173-383
               

               Cow position:
               chr11:70303797-70304006 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               159
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               157, 32
               

               Conread position:
               173-395
               

               Cow position:
               chr11:7248166-7247947 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               163
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               36, 48
               

               Conread position:
               173-420
               

               Cow position:
               chr11:13247408-13247156 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               168
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               35, 229
               

               Conread position:
               173-424
               

               Cow position:
               chr11:36193011-36193267 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               45, 207
               

               Conread position:
               173-432
               

               Cow position:
               chr11:39078400-39078136 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               178
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               35, 56
               

               Conread position:
               173-432
               

               Cow position:
               chr11:39799600-39799864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               177
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               35, 56
               

               Conread position:
               173-449
               

               Cow position:
               chr11:17078625-17078906 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               187
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               35, 56
               

               Conread position:
               173-449
               

               Cow position:
               chr11:35206811-35206530 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               184
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               35, 229
               

               Conread position:
               173-449
               

               Cow position:
               chr11:60945701-60945982 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               188
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               35, 207
               

               Conread position:
               173-454
               

               Cow position:
               chr11:41260269-41259983 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               184
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               47, 235
               

               Conread position:
               173-454
               

               Cow position:
               chr11:52179975-52180261 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               191
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               35, 56
               

               Conread position:
               173-470
               

               Cow position:
               chr11:13015167-13014864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               198
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               35, 56
               

               Conread position:
               173-470
               

               Cow position:
               chr11:24731641-24731941 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               197
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               54, 36
               

               Conread position:
               173-470
               

               Cow position:
               chr11:32030803-32031104 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               200
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               35, 56
               

               Conread position:
               173-496
               

               Cow position:
               chr11:27944273-27944601 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               187
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               35, 56
               

               Conread position:
               173-509
               

               Cow position:
               chr11:25386781-25387117 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               243
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               49, 79
               

               Conread position:
               173-509
               

               Cow position:
               chr11:43593703-43594044 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               231
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               45, 120
               

               Conread position:
               173-509
               

               Cow position:
               chr11:61202872-61203214 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               224
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               8, 181
               

               Conread position:
               173-511
               

               Cow position:
               chr11:76606400-76606723 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               227
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               196, 50
               

               Conread position:
               173-512
               

               Cow position:
               chr11:64090375-64090045 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               243
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               36, 6
               

               Conread position:
               173-562
               

               Cow position:
               chr11:44637050-44636648 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 48
               

               Conread position:
               173-562
               

               Cow position:
               chr11:62151171-62150787 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               264
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               49, 112
               

               Conread position:
               173-563
               

               Cow position:
               chr11:951979-952374 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 189
               

               Conread position:
               173-622
               

               Cow position:
               chr11:866007-866446 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 191
               

               Conread position:
               173-623
               

               Cow position:
               chr11:17321372-17321807 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               298
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               421, 32
               

               Conread position:
               173-643
               

               Cow position:
               chr11:40892-41357 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               320
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               36, 48
               

               Conread position:
               173-660
               

               Cow position:
               chr11:8988519-8988026 (view UCSC Genome Browser custom track)
               

               Alignm length:
               506
               

               Alignm identity:
               329
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               41, 48
               

               Conread position:
               174-509
               

               Cow position:
               chr11:12316375-12316036 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               214
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               44, 285
               

               Conread position:
               174-563
               

               Cow position:
               chr11:63847563-63847952 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               271
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               193, 47
               

               Conread position:
               174-647
               

               Cow position:
               chr11:83323289-83323768 (view UCSC Genome Browser custom track)
               

               Alignm length:
               497
               

               Alignm identity:
               328
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               184, 5
               

               Conread position:
               174-656
               

               Cow position:
               chr11:62490145-62490620 (view UCSC Genome Browser custom track)
               

               Alignm length:
               494
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 127
               

               Conread position:
               175-328
               

               Cow position:
               chr11:23418740-23418894 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               112
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               175-328
               

               Cow position:
               chr11:25808046-25807892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               118
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               175-336
               

               Cow position:
               chr11:46592039-46592193 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               121
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               33, 45
               

               Conread position:
               175-361
               

               Cow position:
               chr11:75510520-75510335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               148
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               49, 40
               

               Conread position:
               175-364
               

               Cow position:
               chr11:12111755-12111567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               138
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               47, 126
               

               Conread position:
               175-415
               

               Cow position:
               chr11:10991992-10992236 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               34, 114
               

               Conread position:
               175-431
               

               Cow position:
               chr11:46473971-46473710 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               51, 10
               

               Conread position:
               175-455
               

               Cow position:
               chr11:32609704-32609993 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               200
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               47, 240
               

               Conread position:
               175-455
               

               Cow position:
               chr11:47165424-47165146 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               201
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               39, 45
               

               Conread position:
               175-480
               

               Cow position:
               chr11:18389144-18388853 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               212
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               118, 41
               

               Conread position:
               175-509
               

               Cow position:
               chr11:18526180-18525848 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               216
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               33, 46
               

               Conread position:
               175-622
               

               Cow position:
               chr11:24601679-24602123 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 187
               

               Conread position:
               175-631
               

               Cow position:
               chr11:73354343-73353892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               298
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               42, 110
               

               Conread position:
               175-644
               

               Cow position:
               chr11:6580526-6581022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               499
               

               Alignm identity:
               321
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               53, 41
               

               Conread position:
               175-658
               

               Cow position:
               chr11:1625504-1625020 (view UCSC Genome Browser custom track)
               

               Alignm length:
               497
               

               Alignm identity:
               319
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               15, 110
               

               Conread position:
               175-669
               

               Cow position:
               chr11:42016926-42016426 (view UCSC Genome Browser custom track)
               

               Alignm length:
               513
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 87
               

               Conread position:
               176-319
               

               Cow position:
               chr11:57111594-57111455 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               111
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               38, 44
               

               Conread position:
               176-326
               

               Cow position:
               chr11:12175115-12174964 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               112
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               10, 74
               

               Conread position:
               176-328
               

               Cow position:
               chr11:32067318-32067175 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               116
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               176-328
               

               Cow position:
               chr11:60398813-60398658 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               113
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               176-330
               

               Cow position:
               chr11:39193124-39192969 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               112
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               176-364
               

               Cow position:
               chr11:16795438-16795252 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               39, 62
               

               Conread position:
               176-366
               

               Cow position:
               chr11:29947213-29947029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               145
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               46, 107
               

               Conread position:
               176-370
               

               Cow position:
               chr11:60470467-60470269 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               143
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               7, 95
               

               Conread position:
               176-375
               

               Cow position:
               chr11:35881624-35881825 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               144
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               12, 108
               

               Conread position:
               176-405
               

               Cow position:
               chr11:34121466-34121708 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               166
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               13, 175
               

               Conread position:
               176-405
               

               Cow position:
               chr11:46398841-46399070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               46, 40
               

               Conread position:
               176-411
               

               Cow position:
               chr11:58614374-58614615 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               174, 43
               

               Conread position:
               176-449
               

               Cow position:
               chr11:40398307-40398029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               189
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               32, 53
               

               Conread position:
               176-481
               

               Cow position:
               chr11:16251536-16251223 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 127
               

               Conread position:
               176-489
               

               Cow position:
               chr11:44642572-44642256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               226
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               44, 39
               

               Conread position:
               176-509
               

               Cow position:
               chr11:4436046-4436368 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               234
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               34, 45
               

               Conread position:
               176-511
               

               Cow position:
               chr11:35874267-35873952 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               235
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               242, 38
               

               Conread position:
               176-517
               

               Cow position:
               chr11:65987944-65988281 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               236
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               38, 44
               

               Conread position:
               176-525
               

               Cow position:
               chr11:23138348-23137990 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               246
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               7, 45
               

               Conread position:
               176-526
               

               Cow position:
               chr11:41271852-41272203 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               234
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               50, 11
               

               Conread position:
               176-542
               

               Cow position:
               chr11:56654262-56654634 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               253
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               74, 40
               

               Conread position:
               176-554
               

               Cow position:
               chr11:8841027-8840655 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               264
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               51, 179
               

               Conread position:
               176-572
               

               Cow position:
               chr11:70745822-70745418 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               259
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               99, 33
               

               Conread position:
               176-607
               

               Cow position:
               chr11:49935030-49934592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               292
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               13, 102
               

               Conread position:
               176-607
               

               Cow position:
               chr11:68207122-68206695 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               290
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               301, 43
               
UCSC Genome Browser
               Conread position:
               176-627
               

               Cow position:
               chr11:49148763-49149217 (view  custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               297
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               38, 44
               
UCSC Genome Browser
               
               
               
Conread position: 176-638

               
               
               
Cow position: chr11:48932869-48932407 (view  custom track)

               
               
               
Alignm length: 475

               
               
               
Alignm identity: 310

               
               
               
Alignm E-value: 5e-39

               
               
               
Alignm gaps (pig, cow): 38, 44
UCSC Genome Browser
               
               
               
Conread position: 176-644

               
               
               
Cow position: chr11:43646703-43646242 (view  custom track)

               
               
               
Alignm length: 482

               
               
               
Alignm identity: 309

               
               
               
Alignm E-value: 5e-30

               
               
               
Alignm gaps (pig, cow): 46, 13

               
               
               Conread position:176-652
               
               
               Cow position:chr11:11125376-11125862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 101

               
               
               Conread position:176-654
               
               
               Cow position:chr11:74316420-74316902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 44

               
               
               Conread position:176-657
               
               
               Cow position:chr11:20761559-20762054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 107

               
               
               Conread position:176-660
               
               
               Cow position:chr11:13499728-13500214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:327
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):45, 97

               
               
               Conread position:176-665
               
               
               Cow position:chr11:30191883-30192391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 151

               
               
               Conread position:177-312
               
               
               Cow position:chr11:37547199-37547063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):37, 44

               
               
               Conread position:177-328
               
               
               Cow position:chr11:9234343-9234491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):32, 25

               
               
               Conread position:177-328
               
               
               Cow position:chr11:47104554-47104401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:177-328
               
               
               Cow position:chr11:80809932-80809780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:177-352
               
               
               Cow position:chr11:40609006-40608831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):32, 44

               
               
               Conread position:177-455
               
               
               Cow position:chr11:47586631-47586355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):41, 82

               
               
               Conread position:177-525
               
               
               Cow position:chr11:34112988-34113330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):43, 75

               
               
               Conread position:177-616
               
               
               Cow position:chr11:63518728-63519154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:288
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):11, 109

               
               
               Conread position:177-627
               
               
               Cow position:chr11:48474423-48474880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:308
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):32, 44

               
               
               Conread position:178-328
               
               
               Cow position:chr11:60512501-60512650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):36, 42

               
               
               Conread position:178-334
               
               
               Cow position:chr11:85271982-85271827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):36, 42

               
               
               Conread position:178-627
               
               
               Cow position:chr11:13043420-13042977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:291
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):153, 7

               
               
               Conread position:178-656
               
               
               Cow position:chr11:81300897-81300420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:321
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):31, 43

               
               
               Conread position:178-660
               
               
               Cow position:chr11:30708219-30708710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:334
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):36, 42

               
               
               Conread position:179-328
               
               
               Cow position:chr11:72789838-72789694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):35, 41

               
               
               Conread position:179-348
               
               
               Cow position:chr11:64932579-64932416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):35, 41

               
               
               Conread position:179-366
               
               
               Cow position:chr11:25646150-25645962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):35, 47

               
               
               Conread position:179-367
               
               
               Cow position:chr11:84891035-84890847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):35, 41

               
               
               Conread position:179-477
               
               
               Cow position:chr11:37347192-37347495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:214
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):34, 23

               
               
               Conread position:179-513
               
               
               Cow position:chr11:23128819-23128487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 26

               
               
               Conread position:179-564
               
               
               Cow position:chr11:65409441-65409050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:258
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):32, 42

               
               
               Conread position:179-565
               
               
               Cow position:chr11:7589907-7590298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:268
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):41, 235

               
               
               Conread position:179-604
               
               
               Cow position:chr11:38235960-38236404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:286
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):36, 123

               
               
               Conread position:179-612
               
               
               Cow position:chr11:59463915-59463485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:271
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):158, 37

               
               
               Conread position:179-619
               
               
               Cow position:chr11:18244225-18243781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 230

               
               
               Conread position:179-622
               
               
               Cow position:chr11:76369805-76369353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:301
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):36, 114

               
               
               Conread position:179-673
               
               
               Cow position:chr11:6234162-6233660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:326
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):31, 42

               
               
               Conread position:180-386
               
               
               Cow position:chr11:29802841-29802646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:180-627
               
               
               Cow position:chr11:17083580-17083142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 81

               
               
               Conread position:180-660
               
               
               Cow position:chr11:84385925-84385436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:331
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):122, 9

               
               
               Conread position:181-455
               
               
               Cow position:chr11:77207767-77208037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):41, 102

               
               
               Conread position:181-627
               
               
               Cow position:chr11:80564023-80564468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:303
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):42, 135

               
               
               Conread position:182-325
               
               
               Cow position:chr11:10127894-10127754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:182-328
               
               
               Cow position:chr11:35282843-35282988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):32, 7

               
               
               Conread position:182-395
               
               
               Cow position:chr11:67931775-67931556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):29, 39

               
               
               Conread position:182-417
               
               
               Cow position:chr11:25165165-25165399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:186
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):185, 37

               
               
               Conread position:182-512
               
               
               Cow position:chr11:33754181-33753857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):7, 102

               
               
               Conread position:182-513
               
               
               Cow position:chr11:69119019-69119346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 168

               
               
               Conread position:182-659
               
               
               Cow position:chr11:30165227-30165710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:319
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):18, 43

               
               
               Conread position:182-664
               
               
               Cow position:chr11:2788099-2788606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:342
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):27, 39

               
               
               Conread position:183-322
               
               
               Cow position:chr11:17514980-17515120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):35, 81

               
               
               Conread position:183-328
               
               
               Cow position:chr11:70163620-70163768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:183-328
               
               
               Cow position:chr11:80520688-80520835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:183-330
               
               
               Cow position:chr11:63920567-63920421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):31, 37

               
               
               Conread position:183-335
               
               
               Cow position:chr11:56892540-56892691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:183-335
               
               
               Cow position:chr11:73474053-73473900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:183-336
               
               
               Cow position:chr11:30466894-30466745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:183-350
               
               
               Cow position:chr11:31873289-31873455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):147, 33

               
               
               Conread position:183-364
               
               
               Cow position:chr11:3282779-3282951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:183-365
               
               
               Cow position:chr11:37563190-37563364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):37, 32

               
               
               Conread position:183-367
               
               
               Cow position:chr11:8828908-8828725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):43, 95

               
               
               Conread position:183-367
               
               
               Cow position:chr11:38193872-38194057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:183-375
               
               
               Cow position:chr11:85189664-85189471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):6, 178

               
               
               Conread position:183-386
               
               
               Cow position:chr11:30172099-30172293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:183-406
               
               
               Cow position:chr11:39057359-39057576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):37, 32

               
               
               Conread position:183-410
               
               
               Cow position:chr11:19508017-19508246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:184
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):39, 91

               
               
               Conread position:183-413
               
               
               Cow position:chr11:11534181-11533955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:183-417
               
               
               Cow position:chr11:48650515-48650752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):147, 36

               
               
               Conread position:183-417
               
               
               Cow position:chr11:58459851-58460070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):211, 32

               
               
               Conread position:183-435
               
               
               Cow position:chr11:53142492-53142246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):31, 38

               
               
               Conread position:183-449
               
               
               Cow position:chr11:9222005-9221737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):26, 38

               
               
               Conread position:183-451
               
               
               Cow position:chr11:18484439-18484178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):42, 91

               
               
               Conread position:183-455
               
               
               Cow position:chr11:30110692-30110957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):172, 31

               
               
               Conread position:183-455
               
               
               Cow position:chr11:62965833-62965553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):39, 118

               
               
               Conread position:183-455
               
               
               Cow position:chr11:81614911-81614645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):159, 75

               
               
               Conread position:183-461
               
               
               Cow position:chr11:7334001-7333719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):35, 103

               
               
               Conread position:183-476
               
               
               Cow position:chr11:14308359-14308655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):28, 37

               
               
               Conread position:183-507
               
               
               Cow position:chr11:1668395-1668717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):26, 103

               
               
               Conread position:183-509
               
               
               Cow position:chr11:42003233-42002899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:232
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):151, 23

               
               
               Conread position:183-509
               
               
               Cow position:chr11:46580087-46580406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):27, 38

               
               
               Conread position:183-512
               
               
               Cow position:chr11:10620605-10620276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 76

               
               
               Conread position:183-513
               
               
               Cow position:chr11:43430726-43430404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:231
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):39, 78

               
               
               Conread position:183-525
               
               
               Cow position:chr11:22978136-22977809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:239
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):211, 32

               
               
               Conread position:183-525
               
               
               Cow position:chr11:42519465-42519798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):160, 25

               
               
               Conread position:183-542
               
               
               Cow position:chr11:80530091-80530437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):26, 38

               
               
               Conread position:183-591
               
               
               Cow position:chr11:67804473-67804881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:282
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):147, 34

               
               
               Conread position:183-626
               
               
               Cow position:chr11:55761600-55762027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:295
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):31, 37

               
               
               Conread position:183-627
               
               
               Cow position:chr11:34467317-34467733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:300
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):6, 96

               
               
               Conread position:183-644
               
               
               Cow position:chr11:67600488-67600966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 366

               
               
               Conread position:183-644
               
               
               Cow position:chr11:83043640-83043179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 100

               
               
               Conread position:183-645
               
               
               Cow position:chr11:21844412-21843950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 32

               
               
               Conread position:183-656
               
               
               Cow position:chr11:55333628-55334118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:327
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):6, 242

               
               
               Conread position:183-660
               
               
               Cow position:chr11:77745533-77745044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:335
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):30, 94

               
               
               Conread position:183-664
               
               
               Cow position:chr11:21549216-21549694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:313
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):26, 38

               
               
               Conread position:184-323
               
               
               Cow position:chr11:2281565-2281435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:184-364
               
               
               Cow position:chr11:30475721-30475903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):30, 36

               
               
               Conread position:184-366
               
               
               Cow position:chr11:31885239-31885420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):35, 101

               
               
               Conread position:184-444
               
               
               Cow position:chr11:75748157-75748418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):30, 36

               
               
               Conread position:184-513
               
               
               Cow position:chr11:1362759-1362415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:240
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:184-525
               
               
               Cow position:chr11:34830058-34829721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:236
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):31, 105

               
               
               Conread position:184-528
               
               
               Cow position:chr11:32377909-32378253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:243
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):38, 99

               
               
               Conread position:184-600
               
               
               Cow position:chr11:45646869-45646448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 31

               
               
               Conread position:184-722
               
               
               Cow position:chr11:34120920-34121462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:556
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 14

               
               
               Conread position:185-327
               
               
               Cow position:chr11:18891003-18891145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:185-328
               
               
               Cow position:chr11:32194445-32194297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:185-367
               
               
               Cow position:chr11:51044214-51044028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:185-367
               
               
               Cow position:chr11:79019793-79019620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):24, 36

               
               
               Conread position:185-398
               
               
               Cow position:chr11:35276023-35276238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):37, 145

               
               
               Conread position:185-416
               
               
               Cow position:chr11:71309806-71309575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):24, 36

               
               
               Conread position:185-417
               
               
               Cow position:chr11:40396050-40396281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):158, 34

               
               
               Conread position:185-417
               
               
               Cow position:chr11:48901355-48901123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):37, 101

               
               
               Conread position:185-424
               
               
               Cow position:chr11:17192559-17192318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):26, 36

               
               
               Conread position:185-469
               
               
               Cow position:chr11:25332006-25331732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):29, 35

               
               
               Conread position:185-482
               
               
               Cow position:chr11:30199681-30199378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):33, 187

               
               
               Conread position:185-513
               
               
               Cow position:chr11:31352848-31352499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:245
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):153, 34

               
               
               Conread position:185-622
               
               
               Cow position:chr11:51688003-51687559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:294
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):33, 81

               
               
               Conread position:186-317
               
               
               Cow position:chr11:67345325-67345198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):28, 34

               
               
               Conread position:186-327
               
               
               Cow position:chr11:61846282-61846139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:186-336
               
               
               Cow position:chr11:57481141-57480996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:186-455
               
               
               Cow position:chr11:48697171-48697443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):36, 100

               
               
               Conread position:186-506
               
               
               Cow position:chr11:38641602-38641928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):40, 217

               
               
               Conread position:186-513
               
               
               Cow position:chr11:8428218-8428564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:245
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):34, 29

               
               
               Conread position:186-526
               
               
               Cow position:chr11:33341422-33341079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 63

               
               
               Conread position:186-625
               
               
               Cow position:chr11:81137945-81138381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:291
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):53, 107

               
               
               Conread position:186-655
               
               
               Cow position:chr11:35348034-35347554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:310
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):34, 239

               
               
               Conread position:187-328
               
               
               Cow position:chr11:39034179-39034313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):35, 86

               
               
               Conread position:187-329
               
               
               Cow position:chr11:18371715-18371580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:187-333
               
               
               Cow position:chr11:36125399-36125547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):27, 39

               
               
               Conread position:187-345
               
               
               Cow position:chr11:57499089-57498928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):35, 120

               
               
               Conread position:187-348
               
               
               Cow position:chr11:17036827-17036665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):28, 33

               
               
               Conread position:187-395
               
               
               Cow position:chr11:21798676-21798875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):143, 88

               
               
               Conread position:187-443
               
               
               Cow position:chr11:75355334-75355593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):31, 90

               
               
               Conread position:187-475
               
               
               Cow position:chr11:15632831-15632539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:215
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):168, 29

               
               
               Conread position:187-503
               
               
               Cow position:chr11:42793246-42792930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 17

               
               
               Conread position:187-508
               
               
               Cow position:chr11:62155355-62155686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:237
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):144, 29

               
               
               Conread position:187-513
               
               
               Cow position:chr11:377926-377589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:235
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):30, 315

               
               
               Conread position:187-513
               
               
               Cow position:chr11:21497265-21497575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):33, 28

               
               
               Conread position:187-627
               
               
               Cow position:chr11:68910123-68909682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:296
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):33, 100

               
               
               Conread position:187-642
               
               
               Cow position:chr11:259454-258987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:307
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):21, 34

               
               
               Conread position:188-328
               
               
               Cow position:chr11:81922606-81922749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:188-336
               
               
               Cow position:chr11:62738941-62739091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:188-395
               
               
               Cow position:chr11:43524348-43524554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):20, 33

               
               
               Conread position:188-450
               
               
               Cow position:chr11:7536523-7536254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):20, 33

               
               
               Conread position:188-465
               
               
               Cow position:chr11:71455513-71455800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):32, 245

               
               
               Conread position:188-480
               
               
               Cow position:chr11:18210623-18210328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:203
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):34, 231

               
               
               Conread position:188-509
               
               
               Cow position:chr11:79728948-79728619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 223

               
               
               Conread position:188-639
               
               
               Cow position:chr11:6400346-6399881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 123

               
               
               Conread position:188-644
               
               
               Cow position:chr11:45632039-45631592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:296
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):23, 33

               
               
               Conread position:188-645
               
               
               Cow position:chr11:52381145-52380683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:308
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):33, 98

               
               
               Conread position:188-674
               
               
               Cow position:chr11:30354793-30355258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 32

               
               
               Conread position:188-747
               
               
               Cow position:chr11:17831502-17830926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:583
               
               
               Alignm identity:362
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):34, 241

               
               
               Conread position:189-315
               
               
               Cow position:chr11:10839439-10839315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):109, 15

               
               
               Conread position:189-328
               
               
               Cow position:chr11:41315587-41315452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):25, 31

               
               
               Conread position:189-330
               
               
               Cow position:chr11:39223891-39223749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:189-367
               
               
               Cow position:chr11:51144444-51144618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):31, 26

               
               
               Conread position:189-383
               
               
               Cow position:chr11:38010085-38009888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):29, 96

               
               
               Conread position:189-402
               
               
               Cow position:chr11:16000655-16000869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):25, 13

               
               
               Conread position:189-455
               
               
               Cow position:chr11:8105509-8105780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):20, 32

               
               
               Conread position:189-512
               
               
               Cow position:chr11:30912265-30911952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):25, 31

               
               
               Conread position:189-516
               
               
               Cow position:chr11:11232728-11232400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:240
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):33, 84

               
               
               Conread position:189-660
               
               
               Cow position:chr11:47193250-47193699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:308
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):25, 32

               
               
               Conread position:189-670
               
               
               Cow position:chr11:53773399-53773893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 32

               
               
               Conread position:190-328
               
               
               Cow position:chr11:32071877-32072012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:190-348
               
               
               Cow position:chr11:5790188-5790029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):19, 100

               
               
               Conread position:190-566
               
               
               Cow position:chr11:56821528-56821142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:250
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):140, 349

               
               
               Conread position:191-327
               
               
               Cow position:chr11:82345484-82345348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):24, 29

               
               
               Conread position:191-418
               
               
               Cow position:chr11:50951279-50951513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:191-508
               
               
               Cow position:chr11:5227010-5226683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):139, 24

               
               
               Conread position:191-526
               
               
               Cow position:chr11:50778098-50778433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 233

               
               
               Conread position:191-617
               
               
               Cow position:chr11:62663504-62663081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:292
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):31, 212

               
               
               Conread position:191-654
               
               
               Cow position:chr11:66041002-66041473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:314
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):29, 24

               
               
               Conread position:192-318
               
               
               Cow position:chr11:83924970-83925096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):30, 99

               
               
               Conread position:192-370
               
               
               Cow position:chr11:7415116-7414944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):22, 28

               
               
               Conread position:192-513
               
               
               Cow position:chr11:24937392-24937718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 28

               
               
               Conread position:192-625
               
               
               Cow position:chr11:19247466-19247036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:294
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):30, 92

               
               
               Conread position:192-662
               
               
               Cow position:chr11:44222630-44223087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:317
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):22, 28

               
               
               Conread position:193-480
               
               
               Cow position:chr11:38810620-38810329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):28, 217

               
               
               Conread position:193-565
               
               
               Cow position:chr11:45898325-45897947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:260
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):27, 45

               
               
               Conread position:194-395
               
               
               Cow position:chr11:25336807-25337011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):136, 158

               
               
               Conread position:194-542
               
               
               Cow position:chr11:8148152-8147820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:234
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):158, 21

               
               
               Conread position:194-558
               
               
               Cow position:chr11:34032464-34032108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:252
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):136, 25

               
               
               Conread position:194-566
               
               
               Cow position:chr11:63482694-63482320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:247
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):21, 82

               
               
               Conread position:194-644
               
               
               Cow position:chr11:62574267-62573840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:288
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):32, 89

               
               
               Conread position:196-366
               
               
               Cow position:chr11:62045132-62045298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):17, 25

               
               
               Conread position:197-366
               
               
               Cow position:chr11:15608558-15608389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):18, 23

               
               
               Conread position:197-620
               
               
               Cow position:chr11:36799561-36799143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:283
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):138, 22

               
               
               Conread position:198-651
               
               
               Cow position:chr11:27746653-27747113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 215

               
               
               Conread position:198-661
               
               
               Cow position:chr11:36194028-36194500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:300
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):20, 70

               
               
               Conread position:199-513
               
               
               Cow position:chr11:3233816-3234128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):21, 223

               
               
               Conread position:201-438
               
               
               Cow position:chr11:30764218-30764460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):14, 207

               
               
               Conread position:201-478
               
               
               Cow position:chr11:27681238-27681519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):154, 18

               
               
               Conread position:201-509
               
               
               Cow position:chr11:29916276-29916590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):8, 20

               
               
               Conread position:201-513
               
               
               Cow position:chr11:22499612-22499314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:210
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:201-513
               
               
               Cow position:chr11:70836629-70836323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):21, 64

               
               
               Conread position:201-657
               
               
               Cow position:chr11:83397643-83398106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:299
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):17, 60

               
               
               Conread position:201-662
               
               
               Cow position:chr11:31227733-31228156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:309
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):14, 72

               
               
               Conread position:202-322
               
               
               Cow position:chr11:28843194-28843316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:202-328
               
               
               Cow position:chr11:70205787-70205907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:101
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:202-509
               
               
               Cow position:chr11:31525604-31525927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):6, 19

               
               
               Conread position:202-514
               
               
               Cow position:chr11:47544867-47545185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 284

               
               
               Conread position:202-619
               
               
               Cow position:chr11:81162691-81162284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 18

               
               
               Conread position:202-654
               
               
               Cow position:chr11:2917837-2917395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 13

               
               
               Conread position:203-455
               
               
               Cow position:chr11:63516563-63516822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:204-642
               
               
               Cow position:chr11:66188578-66188135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:302
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):29, 15

               
               
               Conread position:204-646
               
               
               Cow position:chr11:36647102-36647517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:293
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):11, 169

               
               
               Conread position:206-626
               
               
               Cow position:chr11:30639206-30638782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:278
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):14, 177

               
               
               Conread position:206-644
               
               
               Cow position:chr11:16342497-16342060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:206-669
               
               
               Cow position:chr11:75480283-75479815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:313
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):15, 74

               
               
               Conread position:207-509
               
               
               Cow position:chr11:81281691-81282006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):143, 12

               
               
               Conread position:208-431
               
               
               Cow position:chr11:63520520-63520745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):159, 11

               
               
               Conread position:208-454
               
               
               Cow position:chr11:2050327-2050580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):122, 11

               
               
               Conread position:208-509
               
               
               Cow position:chr11:3726033-3726337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):122, 11

               
               
               Conread position:208-627
               
               
               Cow position:chr11:35154080-35153649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:291
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):147, 11

               
               
               Conread position:208-627
               
               
               Cow position:chr11:45872571-45872139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:286
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):122, 11

               
               
               Conread position:208-638
               
               
               Cow position:chr11:72870670-72871079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:293
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):14, 69

               
               
               Conread position:208-656
               
               
               Cow position:chr11:56728694-56729137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:302
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):122, 11

               
               
               Conread position:209-454
               
               
               Cow position:chr11:18707065-18706821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):160, 10

               
               
               Conread position:209-654
               
               
               Cow position:chr11:20238421-20238873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 10

               
               
               Conread position:210-395
               
               
               Cow position:chr11:21819695-21819510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):142, 9

               
               
               Conread position:210-618
               
               
               Cow position:chr11:48544190-48544598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:285
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):10, 64

               
               
               Conread position:210-660
               
               
               Cow position:chr11:2907776-2907328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:318
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):33, 9

               
               
               Conread position:212-455
               
               
               Cow position:chr11:62808897-62808657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):122, 7

               
               
               Conread position:213-347
               
               
               Cow position:chr11:64405585-64405451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:216-512
               
               
               Cow position:chr11:18341284-18340989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:201
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):145, 116

               
               
               Conread position:217-626
               
               
               Cow position:chr11:29960059-29960462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:284
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):20, 62

               
               
               Conread position:219-342
               
               
               Cow position:chr11:34692272-34692395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:96
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:219-435
               
               
               Cow position:chr11:41438467-41438248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):111, 71

               
               
               Conread position:219-467
               
               
               Cow position:chr11:5677478-5677730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):118, 207

               
               
               Conread position:219-509
               
               
               Cow position:chr11:57725071-57724776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):111, 191

               
               
               Conread position:219-565
               
               
               Cow position:chr11:30924910-30925264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):116, 65

               
               
               Conread position:219-589
               
               
               Cow position:chr11:82940860-82940492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:263
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):115, 46

               
               
               Conread position:219-627
               
               
               Cow position:chr11:77319181-77319583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:283
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):131, 53

               
               
               Conread position:219-638
               
               
               Cow position:chr11:65157650-65157223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:280
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):133, 34

               
               
               Conread position:219-644
               
               
               Cow position:chr11:15016803-15017246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:294
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):136, 54

               
               
               Conread position:219-655
               
               
               Cow position:chr11:47899034-47899448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 187

               
               
               Conread position:219-659
               
               
               Cow position:chr11:2083905-2084349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:291
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):90, 54

               
               
               Conread position:221-509
               
               
               Cow position:chr11:17495986-17495693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):109, 37

               
               
               Conread position:222-563
               
               
               Cow position:chr11:36659052-36658716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:227
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):145, 60

               
               
               Conread position:222-659
               
               
               Cow position:chr11:62239510-62239944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:287
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):133, 32

               
               
               Conread position:223-665
               
               
               Cow position:chr11:27405307-27404863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 134

               
               
               Conread position:224-395
               
               
               Cow position:chr11:59473146-59473320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:226-430
               
               
               Cow position:chr11:30866907-30867111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):141, 15

               
               
               Conread position:226-512
               
               
               Cow position:chr11:23385480-23385191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):104, 49

               
               
               Conread position:226-538
               
               
               Cow position:chr11:10687123-10686810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):104, 125

               
               
               Conread position:227-459
               
               
               Cow position:chr11:7444805-7445040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):103, 66

               
               
               Conread position:227-505
               
               
               Cow position:chr11:71071661-71071381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):103, 62

               
               
               Conread position:227-527
               
               
               Cow position:chr11:14094659-14094353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):37, 77

               
               
               Conread position:227-600
               
               
               Cow position:chr11:11469868-11469508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:260
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):142, 55

               
               
               Conread position:227-662
               
               
               Cow position:chr11:62620150-62620582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 56

               
               
               Conread position:227-680
               
               
               Cow position:chr11:5961078-5961527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:305
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):74, 56

               
               
               Conread position:228-600
               
               
               Cow position:chr11:36112184-36112563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:261
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):58, 196

               
               
               Conread position:228-658
               
               
               Cow position:chr11:65762830-65762384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:304
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):139, 61

               
               
               Conread position:229-451
               
               
               Cow position:chr11:2514825-2514603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):132, 119

               
               
               Conread position:229-525
               
               
               Cow position:chr11:42044223-42043931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):101, 122

               
               
               Conread position:229-613
               
               
               Cow position:chr11:32436096-32436497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:265
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):102, 221

               
               
               Conread position:229-664
               
               
               Cow position:chr11:33348417-33347991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:288
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):101, 46

               
               
               Conread position:230-618
               
               
               Cow position:chr11:21728499-21728126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:259
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):185, 45

               
               
               Conread position:231-488
               
               
               Cow position:chr11:61246687-61246431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):99, 8

               
               
               Conread position:234-480
               
               
               Cow position:chr11:18591661-18591414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):135, 35

               
               
               Conread position:236-395
               
               
               Cow position:chr11:10364422-10364260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):59, 136

               
               
               Conread position:236-660
               
               
               Cow position:chr11:19593593-19594025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:281
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):94, 117

               
               
               Conread position:237-537
               
               
               Cow position:chr11:69810679-69810979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):152, 121

               
               
               Conread position:238-624
               
               
               Cow position:chr11:81406381-81405999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:262
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):124, 47

               
               
               Conread position:238-638
               
               
               Cow position:chr11:19501001-19500622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:264
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):158, 34

               
               
               Conread position:239-317
               
               
               Cow position:chr11:2576377-2576299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:79
               
               
               Alignm identity:72
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:239-516
               
               
               Cow position:chr11:23586413-23586694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):110, 15

               
               
               Conread position:239-660
               
               
               Cow position:chr11:17660872-17661270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:289
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):134, 32

               
               
               Conread position:239-671
               
               
               Cow position:chr11:39462395-39462833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:291
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):71, 128

               
               
               Conread position:240-561
               
               
               Cow position:chr11:2925512-2925195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):117, 109

               
               
               Conread position:240-632
               
               
               Cow position:chr11:34145138-34144743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:254
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):127, 89

               
               
               Conread position:241-660
               
               
               Cow position:chr11:42884991-42884583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:275
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):89, 58

               
               
               Conread position:242-683
               
               
               Cow position:chr11:15772942-15772484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:297
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):83, 191

               
               
               Conread position:243-529
               
               
               Cow position:chr11:61859118-61858834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):100, 111

               
               
               Conread position:245-492
               
               
               Cow position:chr11:79985897-79986147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):85, 56

               
               
               Conread position:245-620
               
               
               Cow position:chr11:11557952-11558336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:263
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):123, 42

               
               
               Conread position:248-421
               
               
               Cow position:chr11:1599173-1599338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:253-389
               
               
               Cow position:chr11:16843214-16843075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):104, 88

               
               
               Conread position:253-394
               
               
               Cow position:chr11:83033909-83033767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:253-512
               
               
               Cow position:chr11:61958958-61958692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:253-565
               
               
               Cow position:chr11:36238573-36238887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):109, 16

               
               
               Conread position:253-627
               
               
               Cow position:chr11:65607902-65607520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):114, 160

               
               
               Conread position:254-671
               
               
               Cow position:chr11:71493068-71492641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:282
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):64, 155

               
               
               Conread position:259-672
               
               
               Cow position:chr11:65058817-65058397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:265
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):71, 85

               
               
               Conread position:260-532
               
               
               Cow position:chr11:72375890-72375613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):89, 172

               
               
               Conread position:260-658
               
               
               Cow position:chr11:19592199-19591796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:276
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):69, 152

               
               
               Conread position:260-660
               
               
               Cow position:chr11:27913073-27913492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:267
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):70, 15

               
               
               Conread position:261-442
               
               
               Cow position:chr11:47850826-47851008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):100, 17

               
               
               Conread position:265-513
               
               
               Cow position:chr11:49231677-49231926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):71, 85

               
               
               Conread position:268-652
               
               
               Cow position:chr11:63434252-63433872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):84, 144

               
               
               Conread position:269-644
               
               
               Cow position:chr11:47639223-47638836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:249
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):61, 46

               
               
               Conread position:270-657
               
               
               Cow position:chr11:17508754-17508348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:260
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):60, 144

               
               
               Conread position:270-660
               
               
               Cow position:chr11:13592542-13592939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:265
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):60, 137

               
               
               Conread position:271-625
               
               
               Cow position:chr11:20684770-20684401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:242
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):59, 157

               
               
               Conread position:273-480
               
               
               Cow position:chr11:2811921-2811710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:273-525
               
               
               Cow position:chr11:63909850-63909602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):17, 109

               
               
               Conread position:275-662
               
               
               Cow position:chr11:34646402-34646805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 84

               
               
               Conread position:276-459
               
               
               Cow position:chr11:8936673-8936491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):120, 95

               
               
               Conread position:281-513
               
               
               Cow position:chr11:30954815-30955053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:283-572
               
               
               Cow position:chr11:26845762-26845478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):114, 23

               
               
               Conread position:284-704
               
               
               Cow position:chr11:26144279-26143843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:292
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):46, 109

               
               
               Conread position:289-638
               
               
               Cow position:chr11:30830791-30830441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:237
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):79, 320

               
               
               Conread position:295-676
               
               
               Cow position:chr11:75874921-75874554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:242
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):123, 218

               
               
               Conread position:300-720
               
               
               Cow position:chr11:35213325-35212910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:275
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):97, 31

               
               
               Conread position:301-666
               
               
               Cow position:chr11:48295869-48296232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:248
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):56, 105

               
               
               Conread position:302-596
               
               
               Cow position:chr11:56187457-56187748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:200
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):67, 163

               
               
               Conread position:302-627
               
               
               Cow position:chr11:42296780-42296456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:218
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):67, 119

               
               
               Conread position:305-670
               
               
               Cow position:chr11:71390723-71390361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):61, 209

               
               
               Conread position:307-638
               
               
               Cow position:chr11:55494522-55494846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):61, 75

               
               
               Conread position:312-671
               
               
               Cow position:chr11:18851766-18852120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):232, 45

               
               
               Conread position:366-658
               
               
               Cow position:chr11:63999184-63998890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):31, 82

               
               
               Conread position:374-639
               
               
               Cow position:chr11:33409347-33409083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):23, 46

               
               
               Conread position:380-653
               
               
               Cow position:chr11:17721885-17721605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):17, 227
Show alignments to all cow chromosomes.
Conread position:	92-333
Cow position:	chr11:63166530-63166292 (view UCSC Genome Browser custom track)
Alignm length:	246
Alignm identity:	182
Alignm E-value:	4e-37
Alignm gaps (pig, cow):	79, 19
Conread position:	94-365
Cow position:	chr11:26277456-26277190 (view UCSC Genome Browser custom track)
Alignm length:	274
Alignm identity:	185
Alignm E-value:	4e-28
Alignm gaps (pig, cow):	19, 34
Conread position:	94-366
Cow position:	chr11:37991913-37991642 (view UCSC Genome Browser custom track)
Alignm length:	277
Alignm identity:	160
Alignm E-value:	1e-26
Alignm gaps (pig, cow):	190, 122
Conread position:	94-513
Cow position:	chr11:42358761-42359167 (view UCSC Genome Browser custom track)
Alignm length:	424
Alignm identity:	271
Alignm E-value:	2e-31
Alignm gaps (pig, cow):	121, 82
Conread position:	97-460
Cow position:	chr11:32431774-32432141 (view UCSC Genome Browser custom track)
Alignm length:	371
Alignm identity:	238
Alignm E-value:	2e-31
Alignm gaps (pig, cow):	121, 30
Conread position:	99-317
Cow position:	chr11:64352078-64351862 (view UCSC Genome Browser custom track)
Alignm length:	223
Alignm identity:	158
Alignm E-value:	1e-25
Alignm gaps (pig, cow):	115, 24
Conread position:	105-480
Cow position:	chr11:2309520-2309893 (view UCSC Genome Browser custom track)
Alignm length:	382
Alignm identity:	247
Alignm E-value:	2e-32
Alignm gaps (pig, cow):	257, 100
Conread position:	105-622
Cow position:	chr11:27248140-27248654 (view UCSC Genome Browser custom track)
Alignm length:	529
Alignm identity:	372
Alignm E-value:	0
Alignm gaps (pig, cow):	254, 38
Conread position:	111-305
Cow position:	chr11:53147892-53147705 (view UCSC Genome Browser custom track)
Alignm length:	198
Alignm identity:	144
Alignm E-value:	8e-24
Alignm gaps (pig, cow):	65, 19
Conread position:	111-515
Cow position:	chr11:10213908-10213507 (view UCSC Genome Browser custom track)
Alignm length:	414
Alignm identity:	287
Alignm E-value:	0
Alignm gaps (pig, cow):	148, 19
Conread position:	116-461
Cow position:	chr11:70609443-70609789 (view UCSC Genome Browser custom track)
Alignm length:	355
Alignm identity:	236
Alignm E-value:	2e-32
Alignm gaps (pig, cow):	104, 14
Conread position:	118-328
Cow position:	chr11:32218345-32218131 (view UCSC Genome Browser custom track)
Alignm length:	217
Alignm identity:	158
Alignm E-value:	2e-30
Alignm gaps (pig, cow):	12, 55
Conread position:	119-660
Cow position:	chr11:70383040-70382480 (view UCSC Genome Browser custom track)
Alignm length:	565
Alignm identity:	355
Alignm E-value:	4e-38
Alignm gaps (pig, cow):	53, 103
Conread position:	121-347
Cow position:	chr11:64047977-64048204 (view UCSC Genome Browser custom track)
Alignm length:	231
Alignm identity:	159
Alignm E-value:	3e-26
Alignm gaps (pig, cow):	51, 102
Conread position:	124-459
Cow position:	chr11:59156208-59155878 (view UCSC Genome Browser custom track)
Alignm length:	344
Alignm identity:	225
Alignm E-value:	1e-26
Alignm gaps (pig, cow):	90, 44
Conread position:	124-478
Cow position:	chr11:37160456-37160807 (view UCSC Genome Browser custom track)
Alignm length:	363
Alignm identity:	229
Alignm E-value:	8e-23
Alignm gaps (pig, cow):	149, 20
Conread position:	125-507
Cow position:	chr11:6835192-6835580 (view UCSC Genome Browser custom track)
Alignm length:	393
Alignm identity:	257
Alignm E-value:	3e-36
Alignm gaps (pig, cow):	84, 18
Conread position:	126-444
Cow position:	chr11:49105722-49106041 (view UCSC Genome Browser custom track)
Alignm length:	329
Alignm identity:	220
Alignm E-value:	2e-29
Alignm gaps (pig, cow):	64, 50
Conread position:	128-470
Cow position:	chr11:67303349-67303003 (view UCSC Genome Browser custom track)
Alignm length:	352
Alignm identity:	223
Alignm E-value:	8e-23
Alignm gaps (pig, cow):	80, 18
Conread position:	129-513
Cow position:	chr11:35684836-35684448 (view UCSC Genome Browser custom track)
Alignm length:	396
Alignm identity:	284
Alignm E-value:	0
Alignm gaps (pig, cow):	11, 285