• Home
• Research
• Resources
• Publications
• About
• People
• Events
• Jobs
• News
• Contact

Cow genome map

           
Conread name:
           
Ss1.1-Pig3-SRG8022G19.5
        

               
Conread position:
               
92-566
               

               
Cow position:
               
chrX:17631130-17630656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
48, 20
               

               
Conread position:
               
99-328
               

               
Cow position:
               
chrX:10415839-10415619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
119, 44
               

               
Conread position:
               
99-330
               

               
Cow position:
               
chrX:6659053-6659289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
73, 158
               

               
Conread position:
               
99-627
               

               
Cow position:
               
chrX:15007473-15006943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
27, 168
               

               
Conread position:
               
99-660
               

               
Cow position:
               
chrX:38218396-38218961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
580
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
24, 74
               

               
Conread position:
               
100-569
               

               
Cow position:
               
chrX:37232093-37232553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 31
               

               
Conread position:
               
105-421
               

               
Cow position:
               
chrX:36840560-36840875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
84, 71
               

               
Conread position:
               
105-455
               

               
Cow position:
               
chrX:15139855-15139508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
119, 32
               

               
Conread position:
               
105-649
               

               
Cow position:
               
chrX:35268583-35269094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
117, 60
               

               
Conread position:
               
111-526
               

               
Cow position:
               
chrX:7695457-7695859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
219, 13
               

               
Conread position:
               
118-638
               

               
Cow position:
               
chrX:38963812-38964324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
245, 12
               

               
Conread position:
               
120-470
               

               
Cow position:
               
chrX:27325079-27324727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
88, 17
               

               
Conread position:
               
120-509
               

               
Cow position:
               
chrX:2933426-2933816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
210, 51
               

               
Conread position:
               
124-307
               

               
Cow position:
               
chrX:22115570-22115391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
124-328
               

               
Cow position:
               
chrX:31556793-31556586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
20, 6
               

               
Conread position:
               
125-539
               

               
Cow position:
               
chrX:21063991-21064405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
5, 99
               

               
Conread position:
               
126-328
               

               
Cow position:
               
chrX:45787366-45787559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
83, 11
               

               
Conread position:
               
127-328
               

               
Cow position:
               
chrX:25302040-25301843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
98, 44
               

               
Conread position:
               
130-348
               

               
Cow position:
               
chrX:35409379-35409589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
41, 87
               

               
Conread position:
               
130-399
               

               
Cow position:
               
chrX:15485914-15485640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
79, 41
               

               
Conread position:
               
130-625
               

               
Cow position:
               
chrX:22074514-22075009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 47
               

               
Conread position:
               
131-429
               

               
Cow position:
               
chrX:11498910-11498608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
77, 40
               

               
Conread position:
               
131-523
               

               
Cow position:
               
chrX:917658-917261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 87
               

               
Conread position:
               
132-328
               

               
Cow position:
               
chrX:26883418-26883224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
86, 14
               

               
Conread position:
               
132-418
               

               
Cow position:
               
chrX:25281753-25281475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
89, 203
               

               
Conread position:
               
133-474
               

               
Cow position:
               
chrX:16084947-16084599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
39, 277
               

               
Conread position:
               
134-468
               

               
Cow position:
               
chrX:40647694-40648038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
37, 185
               

               
Conread position:
               
134-622
               

               
Cow position:
               
chrX:34238436-34238934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
42, 150
               

               
Conread position:
               
135-665
               

               
Cow position:
               
chrX:25816176-25815645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
87, 33
               

               
Conread position:
               
137-628
               

               
Cow position:
               
chrX:8730797-8731311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
35, 86
               

               
Conread position:
               
138-480
               

               
Cow position:
               
chrX:13785648-13785296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
51, 80
               

               
Conread position:
               
139-502
               

               
Cow position:
               
chrX:42507924-42507562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
76, 32
               

               
Conread position:
               
139-509
               

               
Cow position:
               
chrX:11844518-11844148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
191, 32
               

               
Conread position:
               
139-526
               

               
Cow position:
               
chrX:26441060-26440675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
34, 164
               

               
Conread position:
               
139-638
               

               
Cow position:
               
chrX:28632758-28632255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
76, 123
               

               
Conread position:
               
139-654
               

               
Cow position:
               
chrX:27442832-27442295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
75, 32
               

               
Conread position:
               
139-660
               

               
Cow position:
               
chrX:15147464-15146950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
190, 108
               

               
Conread position:
               
144-509
               

               
Cow position:
               
chrX:47344022-47344389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 27
               

               
Conread position:
               
144-660
               

               
Cow position:
               
chrX:9651317-9650781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
79, 27
               

               
Conread position:
               
144-686
               

               
Cow position:
               
chrX:27705321-27705863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
185, 27
               

               
Conread position:
               
145-571
               

               
Cow position:
               
chrX:17888678-17888262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
69, 76
               

               
Conread position:
               
146-627
               

               
Cow position:
               
chrX:32329891-32330387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
74, 37
               

               
Conread position:
               
147-328
               

               
Cow position:
               
chrX:39347055-39346874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
67, 24
               

               
Conread position:
               
147-328
               

               
Cow position:
               
chrX:46606779-46606601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
147-333
               

               
Cow position:
               
chrX:41192421-41192599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
147-336
               

               
Cow position:
               
chrX:2523999-2523809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
75, 24
               

               
Conread position:
               
147-342
               

               
Cow position:
               
chrX:488221-488413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
67, 24
               

               
Conread position:
               
147-443
               

               
Cow position:
               
chrX:48370827-48371118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
62, 24
               

               
Conread position:
               
147-459
               

               
Cow position:
               
chrX:34990772-34991079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
215, 27
               

               
Conread position:
               
147-460
               

               
Cow position:
               
chrX:9161319-9161625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
183, 24
               

               
Conread position:
               
148-367
               

               
Cow position:
               
chrX:41743644-41743859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
66, 72
               

               
Conread position:
               
148-395
               

               
Cow position:
               
chrX:43648013-43647768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
68, 112
               

               
Conread position:
               
148-513
               

               
Cow position:
               
chrX:5017675-5017324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
73, 39
               

               
Conread position:
               
149-479
               

               
Cow position:
               
chrX:14122019-14121685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
60, 22
               

               
Conread position:
               
149-508
               

               
Cow position:
               
chrX:2945137-2944772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
25, 224
               

               
Conread position:
               
149-513
               

               
Cow position:
               
chrX:33639704-33640072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
69, 32
               

               
Conread position:
               
149-565
               

               
Cow position:
               
chrX:24424657-24424247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
41, 73
               

               
Conread position:
               
150-417
               

               
Cow position:
               
chrX:14819443-14819721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
150-474
               

               
Cow position:
               
chrX:45425093-45424763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
24, 80
               

               
Conread position:
               
150-508
               

               
Cow position:
               
chrX:22821145-22821510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
22, 254
               

               
Conread position:
               
150-520
               

               
Cow position:
               
chrX:34401731-34402106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 21
               

               
Conread position:
               
150-655
               

               
Cow position:
               
chrX:4633121-4632612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 74
               

               
Conread position:
               
150-687
               

               
Cow position:
               
chrX:10412255-10411718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 68
               

               
Conread position:
               
151-673
               

               
Cow position:
               
chrX:32020388-32019875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
58, 70
               

               
Conread position:
               
154-649
               

               
Cow position:
               
chrX:23497925-23497459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
198, 17
               

               
Conread position:
               
155-325
               

               
Cow position:
               
chrX:45420936-45420764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
24, 16
               

               
Conread position:
               
155-327
               

               
Cow position:
               
chrX:8661499-8661669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
155-366
               

               
Cow position:
               
chrX:16529741-16529956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
155-475
               

               
Cow position:
               
chrX:27305665-27305989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
54, 19
               

               
Conread position:
               
155-513
               

               
Cow position:
               
chrX:30543543-30543187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
59, 16
               

               
Conread position:
               
155-563
               

               
Cow position:
               
chrX:40557937-40557524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 16
               

               
Conread position:
               
155-654
               

               
Cow position:
               
chrX:151640-152146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
58, 16
               

               
Conread position:
               
155-657
               

               
Cow position:
               
chrX:31949192-31948687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 16
               

               
Conread position:
               
155-660
               

               
Cow position:
               
chrX:754697-755191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
67, 16
               

               
Conread position:
               
155-661
               

               
Cow position:
               
chrX:41790701-41790176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
217, 16
               

               
Conread position:
               
156-328
               

               
Cow position:
               
chrX:30919653-30919480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
156-474
               

               
Cow position:
               
chrX:10428276-10428601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
16, 226
               

               
Conread position:
               
156-482
               

               
Cow position:
               
chrX:11691244-11691572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
174, 249
               

               
Conread position:
               
156-509
               

               
Cow position:
               
chrX:16289823-16289468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
70, 192
               

               
Conread position:
               
156-512
               

               
Cow position:
               
chrX:43527242-43527604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
64, 52
               

               
Conread position:
               
156-627
               

               
Cow position:
               
chrX:25035650-25035165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 258
               

               
Conread position:
               
158-335
               

               
Cow position:
               
chrX:17743802-17743979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
57, 32
               

               
Conread position:
               
158-476
               

               
Cow position:
               
chrX:7718595-7718909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 13
               

               
Conread position:
               
158-509
               

               
Cow position:
               
chrX:6655528-6655170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
14, 246
               

               
Conread position:
               
158-509
               

               
Cow position:
               
chrX:26531697-26532056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
14, 313
               

               
Conread position:
               
158-537
               

               
Cow position:
               
chrX:7496987-7497364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
190, 13
               

               
Conread position:
               
158-600
               

               
Cow position:
               
chrX:28866250-28865814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
48, 13
               

               
Conread position:
               
158-652
               

               
Cow position:
               
chrX:3654345-3654844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
64, 172
               

               
Conread position:
               
158-683
               

               
Cow position:
               
chrX:7178651-7179159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
159-326
               

               
Cow position:
               
chrX:5892971-5893138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
49, 12
               

               
Conread position:
               
159-326
               

               
Cow position:
               
chrX:14908759-14908924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
159-395
               

               
Cow position:
               
chrX:12115784-12116025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
49, 12
               

               
Conread position:
               
159-401
               

               
Cow position:
               
chrX:35388164-35387916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 12
               

               
Conread position:
               
159-462
               

               
Cow position:
               
chrX:28157228-28157544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
61, 12
               

               
Conread position:
               
159-492
               

               
Cow position:
               
chrX:38072028-38071690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
55, 12
               

               
Conread position:
               
159-510
               

               
Cow position:
               
chrX:19689961-19690309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
55, 12
               

               
Conread position:
               
159-523
               

               
Cow position:
               
chrX:41238620-41238248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
148, 12
               

               
Conread position:
               
159-525
               

               
Cow position:
               
chrX:39546230-39545870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
181, 12
               

               
Conread position:
               
159-662
               

               
Cow position:
               
chrX:33466360-33466868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
208, 15
               

               
Conread position:
               
160-329
               

               
Cow position:
               
chrX:501845-501674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
160-395
               

               
Cow position:
               
chrX:3396023-3395788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
16, 64
               

               
Conread position:
               
160-396
               

               
Cow position:
               
chrX:42587685-42587448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
61, 11
               

               
Conread position:
               
160-421
               

               
Cow position:
               
chrX:9227241-9226972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
32, 63
               

               
Conread position:
               
160-449
               

               
Cow position:
               
chrX:24757953-24757660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
48, 11
               

               
Conread position:
               
160-506
               

               
Cow position:
               
chrX:16734301-16734650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
93, 11
               

               
Conread position:
               
161-330
               

               
Cow position:
               
chrX:22873143-22873312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
50, 15
               

               
Conread position:
               
161-360
               

               
Cow position:
               
chrX:36778151-36778352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
63, 10
               

               
Conread position:
               
161-477
               

               
Cow position:
               
chrX:25713544-25713857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
10, 29
               

               
Conread position:
               
161-563
               

               
Cow position:
               
chrX:28878417-28878022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
56, 15
               

               
Conread position:
               
162-281
               

               
Cow position:
               
chrX:2351808-2351927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
48, 9
               

               
Conread position:
               
162-318
               

               
Cow position:
               
chrX:33205246-33205097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
56, 9
               

               
Conread position:
               
162-324
               

               
Cow position:
               
chrX:16531745-16531901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
162-325
               

               
Cow position:
               
chrX:27459001-27459165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
67, 9
               

               
Conread position:
               
162-326
               

               
Cow position:
               
chrX:4404281-4404445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-326
               

               
Cow position:
               
chrX:9154106-9154270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
46, 12
               

               
Conread position:
               
162-326
               

               
Cow position:
               
chrX:35803560-35803724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-326
               

               
Cow position:
               
chrX:45467474-45467309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
66, 9
               

               
Conread position:
               
162-327
               

               
Cow position:
               
chrX:32871040-32870876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
60, 9
               

               
Conread position:
               
162-328
               

               
Cow position:
               
chrX:7382069-7382231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
60, 9
               

               
Conread position:
               
162-328
               

               
Cow position:
               
chrX:18293675-18293838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
10, 60
               

               
Conread position:
               
162-328
               

               
Cow position:
               
chrX:23264694-23264525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
162-328
               

               
Cow position:
               
chrX:25283398-25283242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
59, 9
               

               
Conread position:
               
162-330
               

               
Cow position:
               
chrX:29925833-29925670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
52, 58
               

               
Conread position:
               
162-330
               

               
Cow position:
               
chrX:31373320-31373475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
52, 9
               

               
Conread position:
               
162-331
               

               
Cow position:
               
chrX:4123581-4123742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
56, 9
               

               
Conread position:
               
162-335
               

               
Cow position:
               
chrX:126538-126705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
56, 9
               

               
Conread position:
               
162-335
               

               
Cow position:
               
chrX:36692981-36693149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
63, 9
               

               
Conread position:
               
162-336
               

               
Cow position:
               
chrX:31473268-31473443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
58, 9
               

               
Conread position:
               
162-340
               

               
Cow position:
               
chrX:12018021-12018196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
51, 9
               

               
Conread position:
               
162-342
               

               
Cow position:
               
chrX:3161270-3161091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
56, 9
               

               
Conread position:
               
162-343
               

               
Cow position:
               
chrX:10916500-10916672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
60, 14
               

               
Conread position:
               
162-346
               

               
Cow position:
               
chrX:47608160-47608345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
47, 9
               

               
Conread position:
               
162-350
               

               
Cow position:
               
chrX:15531409-15531220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
47, 9
               

               
Conread position:
               
162-350
               

               
Cow position:
               
chrX:26759823-26759634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
47, 9
               

               
Conread position:
               
162-360
               

               
Cow position:
               
chrX:6012361-6012164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
58, 9
               

               
Conread position:
               
162-366
               

               
Cow position:
               
chrX:15346223-15346017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-367
               

               
Cow position:
               
chrX:7806123-7806329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
55, 9
               

               
Conread position:
               
162-367
               

               
Cow position:
               
chrX:17497842-17498032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
52, 9
               

               
Conread position:
               
162-367
               

               
Cow position:
               
chrX:32978511-32978310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
56, 97
               

               
Conread position:
               
162-370
               

               
Cow position:
               
chrX:15596784-15596994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
52, 9
               

               
Conread position:
               
162-383
               

               
Cow position:
               
chrX:33020232-33020451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
52, 9
               

               
Conread position:
               
162-394
               

               
Cow position:
               
chrX:4869289-4869526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
53, 12
               

               
Conread position:
               
162-394
               

               
Cow position:
               
chrX:23215853-23216090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
53, 12
               

               
Conread position:
               
162-417
               

               
Cow position:
               
chrX:28097871-28098115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
50, 9
               

               
Conread position:
               
162-417
               

               
Cow position:
               
chrX:30162743-30162999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
52, 9
               

               
Conread position:
               
162-420
               

               
Cow position:
               
chrX:15008686-15008426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-420
               

               
Cow position:
               
chrX:42086608-42086860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
53, 9
               

               
Conread position:
               
162-424
               

               
Cow position:
               
chrX:7755647-7755913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-432
               

               
Cow position:
               
chrX:10351607-10351880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-432
               

               
Cow position:
               
chrX:19333423-19333149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-432
               

               
Cow position:
               
chrX:34413522-34413796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-438
               

               
Cow position:
               
chrX:46382030-46381755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
52, 9
               

               
Conread position:
               
162-439
               

               
Cow position:
               
chrX:20582776-20583045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 9
               

               
Conread position:
               
162-447
               

               
Cow position:
               
chrX:20580006-20579716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
47, 9
               

               
Conread position:
               
162-448
               

               
Cow position:
               
chrX:16074322-16074612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-448
               

               
Cow position:
               
chrX:36820486-36820196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
46, 12
               

               
Conread position:
               
162-449
               

               
Cow position:
               
chrX:671263-670972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
56, 9
               

               
Conread position:
               
162-449
               

               
Cow position:
               
chrX:1576517-1576226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-449
               

               
Cow position:
               
chrX:4343495-4343786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
66, 9
               

               
Conread position:
               
162-449
               

               
Cow position:
               
chrX:5334074-5333785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-449
               

               
Cow position:
               
chrX:5423320-5423029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-449
               

               
Cow position:
               
chrX:5599232-5598941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-449
               

               
Cow position:
               
chrX:6196008-6195717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-449
               

               
Cow position:
               
chrX:9128802-9129093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-449
               

               
Cow position:
               
chrX:11715716-11715425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-449
               

               
Cow position:
               
chrX:12850878-12851169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
47, 9
               

               
Conread position:
               
162-449
               

               
Cow position:
               
chrX:14463059-14463350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
52, 9
               

               
Conread position:
               
162-449
               

               
Cow position:
               
chrX:19495214-19494923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-449
               

               
Cow position:
               
chrX:21768550-21768840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-449
               

               
Cow position:
               
chrX:22915212-22915503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-449
               

               
Cow position:
               
chrX:23235576-23235867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-449
               

               
Cow position:
               
chrX:24577819-24577528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-449
               

               
Cow position:
               
chrX:25276753-25276462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-449
               

               
Cow position:
               
chrX:25288933-25288642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
46, 12
               

               
Conread position:
               
162-449
               

               
Cow position:
               
chrX:27404200-27403909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-449
               

               
Cow position:
               
chrX:27469908-27469617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-449
               

               
Cow position:
               
chrX:27594434-27594145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-449
               

               
Cow position:
               
chrX:28555689-28555398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
46, 12
               

               
Conread position:
               
162-449
               

               
Cow position:
               
chrX:29226222-29226509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
46, 12
               

               
Conread position:
               
162-449
               

               
Cow position:
               
chrX:30021352-30021062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-449
               

               
Cow position:
               
chrX:30199246-30198955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-449
               

               
Cow position:
               
chrX:30752520-30752811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
46, 14
               

               
Conread position:
               
162-449
               

               
Cow position:
               
chrX:32039097-32038806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
46, 12
               

               
Conread position:
               
162-449
               

               
Cow position:
               
chrX:34175452-34175161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-449
               

               
Cow position:
               
chrX:37764451-37764160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-449
               

               
Cow position:
               
chrX:48165269-48165560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
53, 9
               

               
Conread position:
               
162-449
               

               
Cow position:
               
chrX:48328641-48328350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
46, 12
               

               
Conread position:
               
162-453
               

               
Cow position:
               
chrX:16478648-16478945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
46, 12
               

               
Conread position:
               
162-453
               

               
Cow position:
               
chrX:38439219-38439518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
50, 9
               

               
Conread position:
               
162-454
               

               
Cow position:
               
chrX:1975851-1975556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-454
               

               
Cow position:
               
chrX:3387852-3388148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
46, 12
               

               
Conread position:
               
162-454
               

               
Cow position:
               
chrX:10444669-10444372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
46, 67
               

               
Conread position:
               
162-454
               

               
Cow position:
               
chrX:10922825-10922529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-454
               

               
Cow position:
               
chrX:15781327-15781623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
46, 12
               

               
Conread position:
               
162-454
               

               
Cow position:
               
chrX:19774734-19774438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
46, 12
               

               
Conread position:
               
162-454
               

               
Cow position:
               
chrX:20099068-20099364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-454
               

               
Cow position:
               
chrX:30822330-30822626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-454
               

               
Cow position:
               
chrX:33983860-33983564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-454
               

               
Cow position:
               
chrX:34095307-34095603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-454
               

               
Cow position:
               
chrX:35497832-35498128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-455
               

               
Cow position:
               
chrX:11358319-11358024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-455
               

               
Cow position:
               
chrX:14924746-14925039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
47, 9
               

               
Conread position:
               
162-455
               

               
Cow position:
               
chrX:15329399-15329682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
51, 9
               

               
Conread position:
               
162-455
               

               
Cow position:
               
chrX:42994360-42994652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 9
               

               
Conread position:
               
162-456
               

               
Cow position:
               
chrX:43983917-43984217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
63, 9
               

               
Conread position:
               
162-457
               

               
Cow position:
               
chrX:42874724-42875024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 9
               

               
Conread position:
               
162-458
               

               
Cow position:
               
chrX:37497701-37497401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
58, 9
               

               
Conread position:
               
162-459
               

               
Cow position:
               
chrX:32743284-32743581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
66, 9
               

               
Conread position:
               
162-459
               

               
Cow position:
               
chrX:34754446-34754149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
66, 9
               

               
Conread position:
               
162-469
               

               
Cow position:
               
chrX:5288941-5288630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-469
               

               
Cow position:
               
chrX:10293416-10293105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-469
               

               
Cow position:
               
chrX:22815687-22815998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-470
               

               
Cow position:
               
chrX:5866892-5867203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-470
               

               
Cow position:
               
chrX:6566820-6567132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-470
               

               
Cow position:
               
chrX:7311739-7312051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
47, 9
               

               
Conread position:
               
162-470
               

               
Cow position:
               
chrX:7509883-7510194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-470
               

               
Cow position:
               
chrX:10495979-10496291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-470
               

               
Cow position:
               
chrX:12032717-12033029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
46, 12
               

               
Conread position:
               
162-470
               

               
Cow position:
               
chrX:13448016-13448328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-470
               

               
Cow position:
               
chrX:15505037-15505349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
56, 9
               

               
Conread position:
               
162-470
               

               
Cow position:
               
chrX:16285955-16286267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-470
               

               
Cow position:
               
chrX:19473415-19473102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
46, 12
               

               
Conread position:
               
162-470
               

               
Cow position:
               
chrX:23109505-23109815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-470
               

               
Cow position:
               
chrX:28058049-28057737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-470
               

               
Cow position:
               
chrX:30899641-30899329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-470
               

               
Cow position:
               
chrX:30981419-30981107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-470
               

               
Cow position:
               
chrX:31605430-31605742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-470
               

               
Cow position:
               
chrX:38014840-38015152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
46, 12
               

               
Conread position:
               
162-470
               

               
Cow position:
               
chrX:44168563-44168251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-471
               

               
Cow position:
               
chrX:36240141-36240454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
47, 9
               

               
Conread position:
               
162-471
               

               
Cow position:
               
chrX:38442708-38443021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
58, 9
               

               
Conread position:
               
162-472
               

               
Cow position:
               
chrX:24317812-24318119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
52, 9
               

               
Conread position:
               
162-473
               

               
Cow position:
               
chrX:27422535-27422221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-473
               

               
Cow position:
               
chrX:46425006-46424693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
168, 9
               

               
Conread position:
               
162-474
               

               
Cow position:
               
chrX:1749763-1749446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-474
               

               
Cow position:
               
chrX:1781651-1781969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
58, 12
               

               
Conread position:
               
162-474
               

               
Cow position:
               
chrX:2362245-2362562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-474
               

               
Cow position:
               
chrX:2580145-2580461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
58, 9
               

               
Conread position:
               
162-474
               

               
Cow position:
               
chrX:3157364-3157681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-474
               

               
Cow position:
               
chrX:4622208-4621892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
53, 9
               

               
Conread position:
               
162-474
               

               
Cow position:
               
chrX:5123615-5123299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
47, 9
               

               
Conread position:
               
162-474
               

               
Cow position:
               
chrX:5646358-5646041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-474
               

               
Cow position:
               
chrX:8530286-8530602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
47, 9
               

               
Conread position:
               
162-474
               

               
Cow position:
               
chrX:9018557-9018240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-474
               

               
Cow position:
               
chrX:9168868-9168554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
65, 12
               

               
Conread position:
               
162-474
               

               
Cow position:
               
chrX:11860496-11860179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
58, 9
               

               
Conread position:
               
162-474
               

               
Cow position:
               
chrX:18462229-18461914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
46, 12
               

               
Conread position:
               
162-474
               

               
Cow position:
               
chrX:20021309-20021625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
46, 12
               

               
Conread position:
               
162-474
               

               
Cow position:
               
chrX:22078073-22078389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
66, 9
               

               
Conread position:
               
162-474
               

               
Cow position:
               
chrX:22557247-22557564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-474
               

               
Cow position:
               
chrX:22608846-22608529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-474
               

               
Cow position:
               
chrX:23140056-23140371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
47, 9
               

               
Conread position:
               
162-474
               

               
Cow position:
               
chrX:24903830-24904147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-474
               

               
Cow position:
               
chrX:29356333-29356649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-474
               

               
Cow position:
               
chrX:30171964-30171648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-474
               

               
Cow position:
               
chrX:30538406-30538089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
46, 12
               

               
Conread position:
               
162-474
               

               
Cow position:
               
chrX:30686850-30686531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
47, 9
               

               
Conread position:
               
162-474
               

               
Cow position:
               
chrX:30816523-30816207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-474
               

               
Cow position:
               
chrX:34333454-34333138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-474
               

               
Cow position:
               
chrX:36730130-36730449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-474
               

               
Cow position:
               
chrX:37772688-37772370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-474
               

               
Cow position:
               
chrX:39549076-39549382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
45, 9
               

               
Conread position:
               
162-474
               

               
Cow position:
               
chrX:39667447-39667130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-474
               

               
Cow position:
               
chrX:41414038-41413721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-474
               

               
Cow position:
               
chrX:45263322-45263007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-475
               

               
Cow position:
               
chrX:17995205-17995522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
56, 9
               

               
Conread position:
               
162-475
               

               
Cow position:
               
chrX:42779380-42779063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
53, 9
               

               
Conread position:
               
162-476
               

               
Cow position:
               
chrX:19188682-19188991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
48, 9
               

               
Conread position:
               
162-476
               

               
Cow position:
               
chrX:27704507-27704189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-476
               

               
Cow position:
               
chrX:29844730-29844412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-479
               

               
Cow position:
               
chrX:11663924-11664245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-479
               

               
Cow position:
               
chrX:13396506-13396186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-479
               

               
Cow position:
               
chrX:13971481-13971160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
47, 9
               

               
Conread position:
               
162-479
               

               
Cow position:
               
chrX:16279395-16279716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
66, 9
               

               
Conread position:
               
162-479
               

               
Cow position:
               
chrX:17055315-17055636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
56, 9
               

               
Conread position:
               
162-479
               

               
Cow position:
               
chrX:17605815-17605494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-479
               

               
Cow position:
               
chrX:22772401-22772722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
64, 9
               

               
Conread position:
               
162-479
               

               
Cow position:
               
chrX:24769114-24768797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
168, 9
               

               
Conread position:
               
162-479
               

               
Cow position:
               
chrX:27627101-27627420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
47, 12
               

               
Conread position:
               
162-479
               

               
Cow position:
               
chrX:29169588-29169267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
47, 9
               

               
Conread position:
               
162-479
               

               
Cow position:
               
chrX:32010777-32011098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-479
               

               
Cow position:
               
chrX:35533597-35533918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
47, 9
               

               
Conread position:
               
162-479
               

               
Cow position:
               
chrX:36931064-36931380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
168, 9
               

               
Conread position:
               
162-479
               

               
Cow position:
               
chrX:42121049-42121370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
47, 12
               

               
Conread position:
               
162-480
               

               
Cow position:
               
chrX:24105372-24105688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
47, 9
               

               
Conread position:
               
162-480
               

               
Cow position:
               
chrX:34192426-34192734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
60, 9
               

               
Conread position:
               
162-481
               

               
Cow position:
               
chrX:19022563-19022240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-482
               

               
Cow position:
               
chrX:12776240-12775918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-484
               

               
Cow position:
               
chrX:35609732-35610060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 9
               

               
Conread position:
               
162-486
               

               
Cow position:
               
chrX:11314032-11313709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
115, 9
               

               
Conread position:
               
162-508
               

               
Cow position:
               
chrX:32171136-32170797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
50, 9
               

               
Conread position:
               
162-509
               

               
Cow position:
               
chrX:14221829-14222168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
70, 9
               

               
Conread position:
               
162-511
               

               
Cow position:
               
chrX:17725724-17726070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 9
               

               
Conread position:
               
162-512
               

               
Cow position:
               
chrX:18695175-18694835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
58, 9
               

               
Conread position:
               
162-512
               

               
Cow position:
               
chrX:23583304-23583657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
56, 9
               

               
Conread position:
               
162-513
               

               
Cow position:
               
chrX:45414554-45414207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
60, 12
               

               
Conread position:
               
162-514
               

               
Cow position:
               
chrX:40269222-40269590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 9
               

               
Conread position:
               
162-520
               

               
Cow position:
               
chrX:40481127-40480766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
15, 44
               

               
Conread position:
               
162-525
               

               
Cow position:
               
chrX:25337923-25338296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
15, 285
               

               
Conread position:
               
162-529
               

               
Cow position:
               
chrX:29289322-29289691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 9
               

               
Conread position:
               
162-559
               

               
Cow position:
               
chrX:38007022-38006623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 9
               

               
Conread position:
               
162-563
               

               
Cow position:
               
chrX:11718034-11717631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
179, 12
               

               
Conread position:
               
162-565
               

               
Cow position:
               
chrX:35224048-35224439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
149, 12
               

               
Conread position:
               
162-625
               

               
Cow position:
               
chrX:35273090-35273586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
162-626
               

               
Cow position:
               
chrX:22482943-22482474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 9
               

               
Conread position:
               
162-627
               

               
Cow position:
               
chrX:34554476-34554940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
176, 9
               

               
Conread position:
               
162-627
               

               
Cow position:
               
chrX:41122818-41123261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
52, 9
               

               
Conread position:
               
162-628
               

               
Cow position:
               
chrX:1055642-1055164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
168, 9
               

               
Conread position:
               
162-637
               

               
Cow position:
               
chrX:31489258-31489747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
53, 9
               

               
Conread position:
               
162-641
               

               
Cow position:
               
chrX:14884218-14883727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 415
               

               
Conread position:
               
162-643
               

               
Cow position:
               
chrX:37072152-37072618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 12
               

               
Conread position:
               
162-644
               

               
Cow position:
               
chrX:6544002-6544478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 9
               

               
Conread position:
               
162-644
               

               
Cow position:
               
chrX:34532277-34532754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 9
               

               
Conread position:
               
162-648
               

               
Cow position:
               
chrX:38094779-38094289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 9
               

               
Conread position:
               
162-654
               

               
Cow position:
               
chrX:30133578-30133078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
56, 9
               

               
Conread position:
               
162-655
               

               
Cow position:
               
chrX:46032972-46032484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
174, 9
               

               
Conread position:
               
162-656
               

               
Cow position:
               
chrX:23564051-23563545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 9
               

               
Conread position:
               
162-656
               

               
Cow position:
               
chrX:31250138-31250634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 9
               

               
Conread position:
               
162-656
               

               
Cow position:
               
chrX:31729204-31729681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
71, 9
               

               
Conread position:
               
162-661
               

               
Cow position:
               
chrX:10866121-10865620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
52, 9
               

               
Conread position:
               
162-663
               

               
Cow position:
               
chrX:22812808-22813323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
172, 9
               

               
Conread position:
               
162-665
               

               
Cow position:
               
chrX:34454415-34454913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
47, 9
               

               
Conread position:
               
162-665
               

               
Cow position:
               
chrX:41879185-41878683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 9
               

               
Conread position:
               
162-690
               

               
Cow position:
               
chrX:40183604-40183072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
60, 9
               

               
Conread position:
               
163-283
               

               
Cow position:
               
chrX:39556070-39555949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
59, 8
               

               
Conread position:
               
163-319
               

               
Cow position:
               
chrX:5856577-5856424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
163-327
               

               
Cow position:
               
chrX:47247163-47247005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
46, 58
               

               
Conread position:
               
163-330
               

               
Cow position:
               
chrX:4629945-4629775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
163-334
               

               
Cow position:
               
chrX:12852763-12852592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
163-334
               

               
Cow position:
               
chrX:33822847-33823017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
128, 99
               

               
Conread position:
               
163-335
               

               
Cow position:
               
chrX:160286-160118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
163-335
               

               
Cow position:
               
chrX:31260884-31260711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
19, 8
               

               
Conread position:
               
163-336
               

               
Cow position:
               
chrX:21795240-21795412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
9, 59
               

               
Conread position:
               
163-350
               

               
Cow position:
               
chrX:14846328-14846139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
163-352
               

               
Cow position:
               
chrX:27590295-27590103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
163-365
               

               
Cow position:
               
chrX:42590014-42589811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
9, 60
               

               
Conread position:
               
163-367
               

               
Cow position:
               
chrX:9997586-9997388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
51, 8
               

               
Conread position:
               
163-370
               

               
Cow position:
               
chrX:45693853-45694056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
55, 8
               

               
Conread position:
               
163-449
               

               
Cow position:
               
chrX:7486610-7486901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
46, 66
               

               
Conread position:
               
163-450
               

               
Cow position:
               
chrX:10095772-10096066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
52, 131
               

               
Conread position:
               
163-451
               

               
Cow position:
               
chrX:42462002-42461709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
21, 60
               

               
Conread position:
               
163-453
               

               
Cow position:
               
chrX:19015188-19015474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
59, 108
               

               
Conread position:
               
163-470
               

               
Cow position:
               
chrX:23703019-23702707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
45, 66
               

               
Conread position:
               
163-474
               

               
Cow position:
               
chrX:44557825-44558141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
46, 77
               

               
Conread position:
               
163-481
               

               
Cow position:
               
chrX:1810415-1810095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
51, 57
               

               
Conread position:
               
163-506
               

               
Cow position:
               
chrX:19290519-19290852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
167, 8
               

               
Conread position:
               
163-506
               

               
Cow position:
               
chrX:37416328-37415982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
51, 8
               

               
Conread position:
               
163-512
               

               
Cow position:
               
chrX:38936446-38936796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
13, 58
               

               
Conread position:
               
163-513
               

               
Cow position:
               
chrX:7571653-7572002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 8
               

               
Conread position:
               
163-513
               

               
Cow position:
               
chrX:17541711-17542058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
233, 8
               

               
Conread position:
               
163-525
               

               
Cow position:
               
chrX:7646005-7646360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
54, 8
               

               
Conread position:
               
163-616
               

               
Cow position:
               
chrX:8899770-8900224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
55, 257
               

               
Conread position:
               
163-627
               

               
Cow position:
               
chrX:20151596-20152064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
49, 58
               

               
Conread position:
               
163-628
               

               
Cow position:
               
chrX:31436226-31436686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 111
               

               
Conread position:
               
163-642
               

               
Cow position:
               
chrX:13912825-13913307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 125
               

               
Conread position:
               
163-644
               

               
Cow position:
               
chrX:31443075-31442606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 57
               

               
Conread position:
               
163-658
               

               
Cow position:
               
chrX:45430271-45429784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 8
               

               
Conread position:
               
163-660
               

               
Cow position:
               
chrX:34565044-34565534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
167, 8
               

               
Conread position:
               
163-662
               

               
Cow position:
               
chrX:5919217-5919736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
55, 34
               

               
Conread position:
               
164-326
               

               
Cow position:
               
chrX:37299342-37299506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
7, 56
               

               
Conread position:
               
164-335
               

               
Cow position:
               
chrX:17271543-17271370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
7, 53
               

               
Conread position:
               
164-341
               

               
Cow position:
               
chrX:20653139-20653318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
10, 142
               

               
Conread position:
               
164-349
               

               
Cow position:
               
chrX:20321021-20320834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
164-565
               

               
Cow position:
               
chrX:14599281-14599686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
51, 10
               

               
Conread position:
               
165-293
               

               
Cow position:
               
chrX:616657-616528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
57, 6
               

               
Conread position:
               
165-328
               

               
Cow position:
               
chrX:20878017-20877851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
7, 80
               

               
Conread position:
               
165-328
               

               
Cow position:
               
chrX:21255783-21255948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
7, 45
               

               
Conread position:
               
165-328
               

               
Cow position:
               
chrX:22811632-22811797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
165-328
               

               
Cow position:
               
chrX:32584067-32583901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
165-328
               

               
Cow position:
               
chrX:38151434-38151601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
165-330
               

               
Cow position:
               
chrX:20376716-20376875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
49, 9
               

               
Conread position:
               
165-353
               

               
Cow position:
               
chrX:16706548-16706740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
7, 149
               

               
Conread position:
               
165-363
               

               
Cow position:
               
chrX:25946088-25945889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
61, 6
               

               
Conread position:
               
165-364
               

               
Cow position:
               
chrX:24125325-24125124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
7, 63
               

               
Conread position:
               
165-366
               

               
Cow position:
               
chrX:38967396-38967594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
9, 111
               

               
Conread position:
               
165-367
               

               
Cow position:
               
chrX:23061200-23061393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
8, 57
               

               
Conread position:
               
165-370
               

               
Cow position:
               
chrX:25237924-25238128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
7, 29
               

               
Conread position:
               
165-390
               

               
Cow position:
               
chrX:32094704-32094471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
165-411
               

               
Cow position:
               
chrX:21665847-21665597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
7, 57
               

               
Conread position:
               
165-420
               

               
Cow position:
               
chrX:24587708-24587448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
7, 239
               

               
Conread position:
               
165-420
               

               
Cow position:
               
chrX:30143539-30143279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
7, 238
               

               
Conread position:
               
165-424
               

               
Cow position:
               
chrX:8782490-8782756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
7, 239
               

               
Conread position:
               
165-450
               

               
Cow position:
               
chrX:36250116-36249827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
11, 58
               

               
Conread position:
               
165-455
               

               
Cow position:
               
chrX:10306419-10306714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
57, 6
               

               
Conread position:
               
165-474
               

               
Cow position:
               
chrX:12347627-12347936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
44, 6
               

               
Conread position:
               
165-477
               

               
Cow position:
               
chrX:28105668-28105980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
24, 136
               

               
Conread position:
               
165-493
               

               
Cow position:
               
chrX:34270162-34270480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
165, 6
               

               
Conread position:
               
165-506
               

               
Cow position:
               
chrX:7053989-7053646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
8, 239
               

               
Conread position:
               
165-509
               

               
Cow position:
               
chrX:2467626-2467977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
7, 19
               

               
Conread position:
               
165-509
               

               
Cow position:
               
chrX:21833631-21833982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
7, 64
               

               
Conread position:
               
165-509
               

               
Cow position:
               
chrX:27498514-27498865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
7, 239
               

               
Conread position:
               
165-509
               

               
Cow position:
               
chrX:35240610-35240958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
7, 145
               

               
Conread position:
               
165-509
               

               
Cow position:
               
chrX:38102698-38102354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
7, 181
               

               
Conread position:
               
165-509
               

               
Cow position:
               
chrX:40544864-40544511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
7, 211
               

               
Conread position:
               
165-509
               

               
Cow position:
               
chrX:47967346-47967700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
21, 57
               

               
Conread position:
               
165-512
               

               
Cow position:
               
chrX:28134095-28134434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
48, 12
               

               
Conread position:
               
165-523
               

               
Cow position:
               
chrX:11082867-11082515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
14, 57
               

               
Conread position:
               
165-562
               

               
Cow position:
               
chrX:1616304-1615895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 314
               

               
Conread position:
               
165-563
               

               
Cow position:
               
chrX:878622-878228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
234, 6
               

               
Conread position:
               
165-566
               

               
Cow position:
               
chrX:7277676-7278059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
212, 6
               

               
Conread position:
               
165-566
               

               
Cow position:
               
chrX:42171550-42171148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 6
               

               
Conread position:
               
165-572
               

               
Cow position:
               
chrX:8796996-8797410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 55
               

               
Conread position:
               
165-619
               

               
Cow position:
               
chrX:31294794-31294361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
349, 54
               

               
Conread position:
               
165-619
               

               
Cow position:
               
chrX:34502669-34503137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 6
               

               
Conread position:
               
165-627
               

               
Cow position:
               
chrX:13868443-13868920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
49, 6
               

               
Conread position:
               
165-655
               

               
Cow position:
               
chrX:7351048-7351544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
57, 6
               

               
Conread position:
               
165-656
               

               
Cow position:
               
chrX:8925452-8925926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
44, 6
               

               
Conread position:
               
165-658
               

               
Cow position:
               
chrX:16762518-16763011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 103
               

               
Conread position:
               
165-660
               

               
Cow position:
               
chrX:41673849-41674346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
9, 58
               

               
Conread position:
               
165-662
               

               
Cow position:
               
chrX:27446437-27446933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
56, 6
               

               
Conread position:
               
166-339
               

               
Cow position:
               
chrX:29083871-29084044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
52, 61
               

               
Conread position:
               
166-655
               

               
Cow position:
               
chrX:4996358-4996832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
6, 69
               

               
Conread position:
               
167-326
               

               
Cow position:
               
chrX:30763671-30763517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
7, 37
               

               
Conread position:
               
168-326
               

               
Cow position:
               
chrX:29777792-29777951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
60, 114
               

               
Conread position:
               
169-326
               

               
Cow position:
               
chrX:22888409-22888569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
169-406
               

               
Cow position:
               
chrX:35041971-35042216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
169-474
               

               
Cow position:
               
chrX:9572275-9572585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
59, 46
               

               
Conread position:
               
169-474
               

               
Cow position:
               
chrX:9976188-9976498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
59, 46
               

               
Conread position:
               
170-305
               

               
Cow position:
               
chrX:5556078-5555945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
131, 103
               

               
Conread position:
               
170-328
               

               
Cow position:
               
chrX:46771219-46771060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
52, 113
               

               
Conread position:
               
170-335
               

               
Cow position:
               
chrX:26619610-26619446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
44, 50
               

               
Conread position:
               
170-348
               

               
Cow position:
               
chrX:48536913-48536734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
170-364
               

               
Cow position:
               
chrX:40452460-40452265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
170-366
               

               
Cow position:
               
chrX:42339183-42338996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
52, 113
               

               
Conread position:
               
170-476
               

               
Cow position:
               
chrX:37836339-37836646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
52, 132
               

               
Conread position:
               
170-509
               

               
Cow position:
               
chrX:37843473-37843810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
53, 106
               

               
Conread position:
               
170-512
               

               
Cow position:
               
chrX:47481551-47481892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
19, 116
               

               
Conread position:
               
170-513
               

               
Cow position:
               
chrX:42470184-42469844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
39, 51
               

               
Conread position:
               
170-627
               

               
Cow position:
               
chrX:27509267-27508808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
48, 113
               

               
Conread position:
               
170-638
               

               
Cow position:
               
chrX:28847126-28846666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
52, 117
               

               
Conread position:
               
170-639
               

               
Cow position:
               
chrX:26492755-26493235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
48, 257
               

               
Conread position:
               
170-647
               

               
Cow position:
               
chrX:20340138-20339656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 101
               

               
Conread position:
               
170-654
               

               
Cow position:
               
chrX:34441697-34441210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 50
               

               
Conread position:
               
170-656
               

               
Cow position:
               
chrX:15545650-15546127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 45
               

               
Conread position:
               
170-660
               

               
Cow position:
               
chrX:5638416-5637928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 50
               

               
Conread position:
               
170-660
               

               
Cow position:
               
chrX:27432166-27431675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 240
               

               
Conread position:
               
170-661
               

               
Cow position:
               
chrX:20887891-20887402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
44, 50
               

               
Conread position:
               
171-474
               

               
Cow position:
               
chrX:26275893-26276200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
44, 58
               

               
Conread position:
               
172-327
               

               
Cow position:
               
chrX:42500249-42500398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
173-303
               

               
Cow position:
               
chrX:32747414-32747547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
173-326
               

               
Cow position:
               
chrX:24735694-24735848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
173-328
               

               
Cow position:
               
chrX:18223169-18223324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
173-337
               

               
Cow position:
               
chrX:2559206-2559042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
48, 69
               

               
Conread position:
               
173-366
               

               
Cow position:
               
chrX:42855164-42855361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
173-415
               

               
Cow position:
               
chrX:11806261-11806013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
38, 48
               

               
Conread position:
               
173-422
               

               
Cow position:
               
chrX:33803257-33802998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
173-424
               

               
Cow position:
               
chrX:39559896-39559640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
157, 231
               

               
Conread position:
               
173-449
               

               
Cow position:
               
chrX:3658298-3658017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
35, 56
               

               
Conread position:
               
173-449
               

               
Cow position:
               
chrX:12001391-12001110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
35, 56
               

               
Conread position:
               
173-449
               

               
Cow position:
               
chrX:22856788-22857075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
35, 56
               

               
Conread position:
               
173-449
               

               
Cow position:
               
chrX:34285307-34285026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
35, 56
               

               
Conread position:
               
173-449
               

               
Cow position:
               
chrX:37061035-37060754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
35, 56
               

               
Conread position:
               
173-450
               

               
Cow position:
               
chrX:2963806-2964084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
45, 135
               

               
Conread position:
               
173-454
               

               
Cow position:
               
chrX:39520699-39520413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
35, 56
               

               
Conread position:
               
173-458
               

               
Cow position:
               
chrX:23572044-23571748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
53, 267
               

               
Conread position:
               
173-474
               

               
Cow position:
               
chrX:2664765-2665072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
35, 56
               

               
Conread position:
               
173-474
               

               
Cow position:
               
chrX:36479688-36479995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
35, 56
               

               
Conread position:
               
173-474
               

               
Cow position:
               
chrX:37958253-37958560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
35, 56
               

               
Conread position:
               
173-474
               

               
Cow position:
               
chrX:45903934-45904240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
53, 229
               

               
Conread position:
               
173-479
               

               
Cow position:
               
chrX:15438893-15438586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
157, 35
               

               
Conread position:
               
173-479
               

               
Cow position:
               
chrX:46579099-46578788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
35, 56
               

               
Conread position:
               
173-482
               

               
Cow position:
               
chrX:20742742-20743056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
45, 207
               

               
Conread position:
               
173-485
               

               
Cow position:
               
chrX:47362130-47361822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
45, 179
               

               
Conread position:
               
173-509
               

               
Cow position:
               
chrX:21593039-21593374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
41, 48
               

               
Conread position:
               
173-509
               

               
Cow position:
               
chrX:27106014-27106352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
55, 43
               

               
Conread position:
               
173-509
               

               
Cow position:
               
chrX:45404078-45403732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
173-572
               

               
Cow position:
               
chrX:5872069-5872478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
39, 48
               

               
Conread position:
               
173-590
               

               
Cow position:
               
chrX:12309633-12309205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 43
               

               
Conread position:
               
173-600
               

               
Cow position:
               
chrX:13648028-13647594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
49, 100
               

               
Conread position:
               
173-627
               

               
Cow position:
               
chrX:45501904-45502351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 48
               

               
Conread position:
               
173-652
               

               
Cow position:
               
chrX:23122140-23122637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
42, 363
               

               
Conread position:
               
173-655
               

               
Cow position:
               
chrX:11655842-11656322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 198
               

               
Conread position:
               
173-660
               

               
Cow position:
               
chrX:7721739-7722223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 5
               

               
Conread position:
               
174-411
               

               
Cow position:
               
chrX:678811-678576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
48, 143
               

               
Conread position:
               
174-449
               

               
Cow position:
               
chrX:43767780-43767500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
34, 55
               

               
Conread position:
               
174-470
               

               
Cow position:
               
chrX:20617040-20616739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
34, 55
               

               
Conread position:
               
174-509
               

               
Cow position:
               
chrX:48195284-48194942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
35, 47
               

               
Conread position:
               
174-655
               

               
Cow position:
               
chrX:12290493-12290962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 18
               

               
Conread position:
               
174-669
               

               
Cow position:
               
chrX:4269311-4268810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
41, 110
               

               
Conread position:
               
175-327
               

               
Cow position:
               
chrX:31338734-31338887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
175-417
               

               
Cow position:
               
chrX:10302094-10302339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
26, 48
               

               
Conread position:
               
175-422
               

               
Cow position:
               
chrX:35284375-35284626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
26, 104
               

               
Conread position:
               
175-513
               

               
Cow position:
               
chrX:11073433-11073094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 105
               

               
Conread position:
               
175-619
               

               
Cow position:
               
chrX:22821805-22822263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
43, 154
               

               
Conread position:
               
176-295
               

               
Cow position:
               
chrX:7710932-7710813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
38, 46
               

               
Conread position:
               
176-307
               

               
Cow position:
               
chrX:919532-919402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
38, 24
               

               
Conread position:
               
176-322
               

               
Cow position:
               
chrX:33538707-33538849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
45, 39
               

               
Conread position:
               
176-327
               

               
Cow position:
               
chrX:13429521-13429375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
176-328
               

               
Cow position:
               
chrX:6607180-6607331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
176-328
               

               
Cow position:
               
chrX:6643018-6643165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
10, 82
               

               
Conread position:
               
176-328
               

               
Cow position:
               
chrX:8558704-8558551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
176-328
               

               
Cow position:
               
chrX:30729647-30729492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
176-335
               

               
Cow position:
               
chrX:9837897-9838057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
176-335
               

               
Cow position:
               
chrX:19930416-19930570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
38, 9
               

               
Conread position:
               
176-336
               

               
Cow position:
               
chrX:29049729-29049880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
38, 46
               

               
Conread position:
               
176-348
               

               
Cow position:
               
chrX:11981890-11982061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
32, 44
               

               
Conread position:
               
176-367
               

               
Cow position:
               
chrX:28111265-28111454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
46, 110
               

               
Conread position:
               
176-415
               

               
Cow position:
               
chrX:38840647-38840890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
44, 39
               

               
Conread position:
               
176-427
               

               
Cow position:
               
chrX:25848678-25848922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
176-470
               

               
Cow position:
               
chrX:23827348-23827647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
32, 53
               

               
Conread position:
               
176-471
               

               
Cow position:
               
chrX:40788962-40789267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
176-480
               

               
Cow position:
               
chrX:24259819-24259517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
168, 38
               

               
Conread position:
               
176-481
               

               
Cow position:
               
chrX:27772197-27771901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
201, 40
               

               
Conread position:
               
176-509
               

               
Cow position:
               
chrX:48652968-48652628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
39, 209
               

               
Conread position:
               
176-512
               

               
Cow position:
               
chrX:9416934-9416588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
46, 102
               

               
Conread position:
               
176-528
               

               
Cow position:
               
chrX:47144847-47145195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
47, 7
               

               
Conread position:
               
176-627
               

               
Cow position:
               
chrX:21663068-21663511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
33, 45
               

               
Conread position:
               
176-658
               

               
Cow position:
               
chrX:9635422-9634948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
35, 45
               

               
Conread position:
               
177-329
               

               
Cow position:
               
chrX:13360292-13360445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
177-526
               

               
Cow position:
               
chrX:7508899-7509249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 72
               

               
Conread position:
               
177-619
               

               
Cow position:
               
chrX:17794745-17795188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 44
               

               
Conread position:
               
177-649
               

               
Cow position:
               
chrX:40035689-40035202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 17
               

               
Conread position:
               
177-660
               

               
Cow position:
               
chrX:42492750-42492269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
37, 23
               

               
Conread position:
               
178-386
               

               
Cow position:
               
chrX:44731355-44731568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
178-458
               

               
Cow position:
               
chrX:32128219-32127950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
165, 91
               

               
Conread position:
               
178-513
               

               
Cow position:
               
chrX:27680164-27680495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
182, 41
               

               
Conread position:
               
179-476
               

               
Cow position:
               
chrX:41167202-41166902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
35, 41
               

               
Conread position:
               
179-600
               

               
Cow position:
               
chrX:45967924-45968336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
42, 96
               

               
Conread position:
               
179-644
               

               
Cow position:
               
chrX:11939162-11938720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 37
               

               
Conread position:
               
179-659
               

               
Cow position:
               
chrX:9360645-9361132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
35, 42
               

               
Conread position:
               
179-659
               

               
Cow position:
               
chrX:40826985-40826500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
34, 74
               

               
Conread position:
               
179-660
               

               
Cow position:
               
chrX:48236574-48237066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
34, 15
               

               
Conread position:
               
180-335
               

               
Cow position:
               
chrX:3154483-3154329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
34, 40
               

               
Conread position:
               
180-513
               

               
Cow position:
               
chrX:32623346-32623668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
38, 15
               

               
Conread position:
               
181-479
               

               
Cow position:
               
chrX:21686378-21686681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
37, 166
               

               
Conread position:
               
181-512
               

               
Cow position:
               
chrX:37910217-37910541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
32, 23
               

               
Conread position:
               
181-631
               

               
Cow position:
               
chrX:27514632-27515079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
28, 40
               

               
Conread position:
               
182-330
               

               
Cow position:
               
chrX:33713776-33713624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
41, 132
               

               
Conread position:
               
182-335
               

               
Cow position:
               
chrX:17964757-17964604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
182-347
               

               
Cow position:
               
chrX:40365027-40364862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
36, 54
               

               
Conread position:
               
182-366
               

               
Cow position:
               
chrX:40116190-40116367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
182-393
               

               
Cow position:
               
chrX:10373072-10373292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
38, 177
               

               
Conread position:
               
182-405
               

               
Cow position:
               
chrX:25419396-25419168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
32, 38
               

               
Conread position:
               
182-411
               

               
Cow position:
               
chrX:8517641-8517863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
33, 53
               

               
Conread position:
               
182-423
               

               
Cow position:
               
chrX:16284182-16283936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
36, 100
               

               
Conread position:
               
182-509
               

               
Cow position:
               
chrX:15814862-15815177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
27, 39
               

               
Conread position:
               
182-512
               

               
Cow position:
               
chrX:6690483-6690164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
38, 33
               

               
Conread position:
               
182-523
               

               
Cow position:
               
chrX:27394249-27393919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
38, 33
               

               
Conread position:
               
182-565
               

               
Cow position:
               
chrX:20697843-20697457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
36, 90
               

               
Conread position:
               
182-619
               

               
Cow position:
               
chrX:46532744-46532282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 439
               

               
Conread position:
               
182-627
               

               
Cow position:
               
chrX:30421174-30420751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
33, 38
               

               
Conread position:
               
182-628
               

               
Cow position:
               
chrX:37119364-37119792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
33, 79
               

               
Conread position:
               
182-641
               

               
Cow position:
               
chrX:9252413-9251933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 85
               

               
Conread position:
               
183-319
               

               
Cow position:
               
chrX:33519383-33519520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
183-325
               

               
Cow position:
               
chrX:46984736-46984590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
37, 126
               

               
Conread position:
               
183-326
               

               
Cow position:
               
chrX:40540376-40540234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
183-328
               

               
Cow position:
               
chrX:6639890-6640033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
37, 92
               

               
Conread position:
               
183-328
               

               
Cow position:
               
chrX:25618146-25618000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
183-328
               

               
Cow position:
               
chrX:37067099-37067248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
183-328
               

               
Cow position:
               
chrX:47243513-47243366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
183-330
               

               
Cow position:
               
chrX:43049108-43049258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
183-334
               

               
Cow position:
               
chrX:15344508-15344659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
39, 66
               

               
Conread position:
               
183-335
               

               
Cow position:
               
chrX:7425230-7425384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
183-335
               

               
Cow position:
               
chrX:9538324-9538477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
38, 32
               

               
Conread position:
               
183-335
               

               
Cow position:
               
chrX:28579987-28580141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
183-347
               

               
Cow position:
               
chrX:2383255-2383416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
31, 37
               

               
Conread position:
               
183-347
               

               
Cow position:
               
chrX:25571230-25571069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
43, 102
               

               
Conread position:
               
183-366
               

               
Cow position:
               
chrX:2206778-2206604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
40, 100
               

               
Conread position:
               
183-366
               

               
Cow position:
               
chrX:31745281-31745096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
39, 121
               

               
Conread position:
               
183-373
               

               
Cow position:
               
chrX:42499263-42499071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
31, 38
               

               
Conread position:
               
183-414
               

               
Cow position:
               
chrX:41403741-41403979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
29, 16
               

               
Conread position:
               
183-414
               

               
Cow position:
               
chrX:41410289-41410527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
29, 16
               

               
Conread position:
               
183-415
               

               
Cow position:
               
chrX:2029156-2029391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
26, 37
               

               
Conread position:
               
183-415
               

               
Cow position:
               
chrX:39700993-39701223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
221, 170
               

               
Conread position:
               
183-417
               

               
Cow position:
               
chrX:8682164-8681925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
38, 78
               

               
Conread position:
               
183-418
               

               
Cow position:
               
chrX:7513282-7513513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
212, 39
               

               
Conread position:
               
183-419
               

               
Cow position:
               
chrX:33827256-33827013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
28, 43
               

               
Conread position:
               
183-452
               

               
Cow position:
               
chrX:9855066-9855334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
32, 187
               

               
Conread position:
               
183-455
               

               
Cow position:
               
chrX:23414602-23414329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
87, 36
               

               
Conread position:
               
183-455
               

               
Cow position:
               
chrX:23970155-23970418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
31, 37
               

               
Conread position:
               
183-459
               

               
Cow position:
               
chrX:6563278-6563567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
31, 38
               

               
Conread position:
               
183-472
               

               
Cow position:
               
chrX:9953907-9954195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
37, 32
               

               
Conread position:
               
183-479
               

               
Cow position:
               
chrX:39938751-39938460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
147, 22
               

               
Conread position:
               
183-480
               

               
Cow position:
               
chrX:20709836-20710138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
6, 261
               

               
Conread position:
               
183-480
               

               
Cow position:
               
chrX:26876115-26875817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
31, 37
               

               
Conread position:
               
183-497
               

               
Cow position:
               
chrX:46044810-46045126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
31, 38
               

               
Conread position:
               
183-512
               

               
Cow position:
               
chrX:21004450-21004780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
174, 19
               

               
Conread position:
               
183-513
               

               
Cow position:
               
chrX:4044084-4043770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
213, 115
               

               
Conread position:
               
183-513
               

               
Cow position:
               
chrX:39558582-39558252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
37, 92
               

               
Conread position:
               
183-514
               

               
Cow position:
               
chrX:619242-618904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 326
               

               
Conread position:
               
183-535
               

               
Cow position:
               
chrX:26625911-26625553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 179
               

               
Conread position:
               
183-552
               

               
Cow position:
               
chrX:1514638-1514286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
17, 103
               

               
Conread position:
               
183-563
               

               
Cow position:
               
chrX:41526755-41526377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
183, 33
               

               
Conread position:
               
183-567
               

               
Cow position:
               
chrX:23514252-23513862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 53
               

               
Conread position:
               
183-572
               

               
Cow position:
               
chrX:41884652-41884251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 183
               

               
Conread position:
               
183-581
               

               
Cow position:
               
chrX:33493541-33493943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 158
               

               
Conread position:
               
183-591
               

               
Cow position:
               
chrX:16416274-16416684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
147, 33
               

               
Conread position:
               
183-625
               

               
Cow position:
               
chrX:34543553-34544000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 38
               

               
Conread position:
               
183-627
               

               
Cow position:
               
chrX:38549214-38549662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 178
               

               
Conread position:
               
183-627
               

               
Cow position:
               
chrX:38642026-38642458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 32
               

               
Conread position:
               
183-627
               

               
Cow position:
               
chrX:42011046-42011477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
154, 178
               

               
Conread position:
               
183-652
               

               
Cow position:
               
chrX:33855467-33854985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
27, 38
               

               
Conread position:
               
183-654
               

               
Cow position:
               
chrX:44961513-44961997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
42, 119
               

               
Conread position:
               
183-655
               

               
Cow position:
               
chrX:38935047-38935526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
26, 38
               

               
Conread position:
               
183-657
               

               
Cow position:
               
chrX:22624247-22624707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
32, 62
               

               
Conread position:
               
183-666
               

               
Cow position:
               
chrX:12249571-12250071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
37, 80
               

               
Conread position:
               
184-512
               

               
Cow position:
               
chrX:32309873-32310201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
212, 163
               

               
Conread position:
               
184-638
               

               
Cow position:
               
chrX:9201314-9201770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 36
               

               
Conread position:
               
184-660
               

               
Cow position:
               
chrX:17231501-17231987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
25, 37
               

               
Conread position:
               
184-664
               

               
Cow position:
               
chrX:36975716-36976201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
38, 103
               

               
Conread position:
               
185-328
               

               
Cow position:
               
chrX:23017773-23017914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
185-328
               

               
Cow position:
               
chrX:45043326-45043470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
35, 19
               

               
Conread position:
               
185-328
               

               
Cow position:
               
chrX:46372975-46372833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
185-335
               

               
Cow position:
               
chrX:11561922-11562071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
185-335
               

               
Cow position:
               
chrX:27176552-27176397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
36, 120
               

               
Conread position:
               
185-342
               

               
Cow position:
               
chrX:10107207-10107051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
35, 30
               

               
Conread position:
               
185-370
               

               
Cow position:
               
chrX:877255-877074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
151, 99
               

               
Conread position:
               
185-384
               

               
Cow position:
               
chrX:45566398-45566604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
185-454
               

               
Cow position:
               
chrX:44053026-44053298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
35, 98
               

               
Conread position:
               
185-468
               

               
Cow position:
               
chrX:41198872-41199158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
24, 36
               

               
Conread position:
               
185-513
               

               
Cow position:
               
chrX:13382092-13382421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
36, 290
               

               
Conread position:
               
185-555
               

               
Cow position:
               
chrX:6278738-6278354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 36
               

               
Conread position:
               
185-660
               

               
Cow position:
               
chrX:30963104-30962625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
37, 85
               

               
Conread position:
               
185-668
               

               
Cow position:
               
chrX:48010362-48010865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
37, 339
               

               
Conread position:
               
186-405
               

               
Cow position:
               
chrX:18456161-18456390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
186-427
               

               
Cow position:
               
chrX:2648581-2648343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
28, 34
               

               
Conread position:
               
186-455
               

               
Cow position:
               
chrX:14900952-14900691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
28, 34
               

               
Conread position:
               
186-576
               

               
Cow position:
               
chrX:5900226-5900623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
32, 234
               

               
Conread position:
               
186-656
               

               
Cow position:
               
chrX:12980060-12979589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 10
               

               
Conread position:
               
187-367
               

               
Cow position:
               
chrX:37048811-37048630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
25, 144
               

               
Conread position:
               
187-387
               

               
Cow position:
               
chrX:33631946-33632139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
40, 150
               

               
Conread position:
               
187-405
               

               
Cow position:
               
chrX:1978275-1978500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
23, 65
               

               
Conread position:
               
187-455
               

               
Cow position:
               
chrX:35681115-35681381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
33, 65
               

               
Conread position:
               
187-514
               

               
Cow position:
               
chrX:3130351-3130670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
31, 119
               

               
Conread position:
               
187-563
               

               
Cow position:
               
chrX:37489500-37489872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
35, 96
               

               
Conread position:
               
187-610
               

               
Cow position:
               
chrX:21672321-21672761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 34
               

               
Conread position:
               
187-619
               

               
Cow position:
               
chrX:35542661-35543092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 34
               

               
Conread position:
               
187-626
               

               
Cow position:
               
chrX:42381330-42380897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
35, 111
               

               
Conread position:
               
187-627
               

               
Cow position:
               
chrX:17662827-17662405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 34
               

               
Conread position:
               
187-664
               

               
Cow position:
               
chrX:42247414-42246928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 112
               

               
Conread position:
               
188-330
               

               
Cow position:
               
chrX:19019339-19019200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
32, 8
               

               
Conread position:
               
188-334
               

               
Cow position:
               
chrX:18812029-18812168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
188-425
               

               
Cow position:
               
chrX:1728646-1728417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
208, 27
               

               
Conread position:
               
188-434
               

               
Cow position:
               
chrX:13265849-13265605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
34, 95
               

               
Conread position:
               
188-454
               

               
Cow position:
               
chrX:11746613-11746884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
26, 36
               

               
Conread position:
               
188-492
               

               
Cow position:
               
chrX:11589821-11589512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
27, 76
               

               
Conread position:
               
188-523
               

               
Cow position:
               
chrX:10959631-10959288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
31, 7
               

               
Conread position:
               
189-344
               

               
Cow position:
               
chrX:4482734-4482889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
33, 100
               

               
Conread position:
               
189-395
               

               
Cow position:
               
chrX:25411612-25411820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
149, 25
               

               
Conread position:
               
190-348
               

               
Cow position:
               
chrX:13245364-13245522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
32, 73
               

               
Conread position:
               
190-509
               

               
Cow position:
               
chrX:11856202-11856523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
32, 40
               

               
Conread position:
               
191-627
               

               
Cow position:
               
chrX:44396789-44397227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
72, 94
               

               
Conread position:
               
192-406
               

               
Cow position:
               
chrX:46315604-46315386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
158, 27
               

               
Conread position:
               
192-438
               

               
Cow position:
               
chrX:29509669-29509417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
23, 91
               

               
Conread position:
               
192-439
               

               
Cow position:
               
chrX:4750523-4750280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
163, 27
               

               
Conread position:
               
192-500
               

               
Cow position:
               
chrX:48800311-48800622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
26, 168
               

               
Conread position:
               
192-525
               

               
Cow position:
               
chrX:9041454-9041135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
22, 30
               

               
Conread position:
               
192-656
               

               
Cow position:
               
chrX:21642703-21642233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
22, 28
               

               
Conread position:
               
193-392
               

               
Cow position:
               
chrX:13191768-13191572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
33, 22
               

               
Conread position:
               
193-411
               

               
Cow position:
               
chrX:17042466-17042688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
34, 92
               

               
Conread position:
               
193-509
               

               
Cow position:
               
chrX:18651266-18650948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
157, 23
               

               
Conread position:
               
193-525
               

               
Cow position:
               
chrX:630532-630201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
18, 28
               

               
Conread position:
               
194-654
               

               
Cow position:
               
chrX:13177688-13177240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 91
               

               
Conread position:
               
195-316
               

               
Cow position:
               
chrX:29193786-29193903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
19, 25
               

               
Conread position:
               
196-642
               

               
Cow position:
               
chrX:37574635-37575047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 80
               

               
Conread position:
               
197-414
               

               
Cow position:
               
chrX:1503119-1503335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
17, 23
               

               
Conread position:
               
197-558
               

               
Cow position:
               
chrX:23091661-23092009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
17, 24
               

               
Conread position:
               
197-638
               

               
Cow position:
               
chrX:36283125-36283567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
25, 213
               

               
Conread position:
               
197-660
               

               
Cow position:
               
chrX:46073042-46072577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
23, 110
               

               
Conread position:
               
198-654
               

               
Cow position:
               
chrX:6413827-6414277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
17, 55
               

               
Conread position:
               
201-325
               

               
Cow position:
               
chrX:25036917-25036794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
19, 100
               

               
Conread position:
               
201-328
               

               
Cow position:
               
chrX:2186042-2186168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
24, 14
               

               
Conread position:
               
201-367
               

               
Cow position:
               
chrX:46430075-46429911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
19, 88
               

               
Conread position:
               
201-416
               

               
Cow position:
               
chrX:40567383-40567604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
19, 14
               

               
Conread position:
               
201-473
               

               
Cow position:
               
chrX:8070916-8070642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
129, 15
               

               
Conread position:
               
201-657
               

               
Cow position:
               
chrX:11633462-11633928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
26, 73
               

               
Conread position:
               
201-662
               

               
Cow position:
               
chrX:29602049-29601581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 100
               

               
Conread position:
               
204-411
               

               
Cow position:
               
chrX:19023225-19023439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
122, 15
               

               
Conread position:
               
205-328
               

               
Cow position:
               
chrX:47046733-47046607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
206-481
               

               
Cow position:
               
chrX:29876276-29876012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
175, 12
               

               
Conread position:
               
206-644
               

               
Cow position:
               
chrX:38852984-38853444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 85
               

               
Conread position:
               
206-657
               

               
Cow position:
               
chrX:8869620-8869157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 127
               

               
Conread position:
               
206-660
               

               
Cow position:
               
chrX:3579735-3580191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
124, 13
               

               
Conread position:
               
207-367
               

               
Cow position:
               
chrX:26285771-26285928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
126, 12
               

               
Conread position:
               
208-452
               

               
Cow position:
               
chrX:6234656-6234412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
122, 11
               

               
Conread position:
               
208-513
               

               
Cow position:
               
chrX:45845885-45846198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
12, 254
               

               
Conread position:
               
208-562
               

               
Cow position:
               
chrX:4826035-4825686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
153, 11
               

               
Conread position:
               
208-626
               

               
Cow position:
               
chrX:9425952-9425547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
12, 95
               

               
Conread position:
               
208-628
               

               
Cow position:
               
chrX:10831704-10831264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
159, 11
               

               
Conread position:
               
208-644
               

               
Cow position:
               
chrX:27174787-27175233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
126, 57
               

               
Conread position:
               
208-659
               

               
Cow position:
               
chrX:45110448-45110894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
144, 10
               

               
Conread position:
               
208-660
               

               
Cow position:
               
chrX:34411632-34412094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 107
               

               
Conread position:
               
208-661
               

               
Cow position:
               
chrX:32420011-32420461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
101, 11
               

               
Conread position:
               
209-459
               

               
Cow position:
               
chrX:36961428-36961684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
122, 208
               

               
Conread position:
               
209-509
               

               
Cow position:
               
chrX:841952-842250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
121, 10
               

               
Conread position:
               
209-643
               

               
Cow position:
               
chrX:29542428-29541996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 68
               

               
Conread position:
               
209-672
               

               
Cow position:
               
chrX:46587611-46588081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
131, 10
               

               
Conread position:
               
210-328
               

               
Cow position:
               
chrX:29770384-29770267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
211-514
               

               
Cow position:
               
chrX:45993013-45993328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
66, 118
               

               
Conread position:
               
213-644
               

               
Cow position:
               
chrX:37781321-37780879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 350
               

               
Conread position:
               
214-451
               

               
Cow position:
               
chrX:30833049-30832817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
8, 85
               

               
Conread position:
               
215-658
               

               
Cow position:
               
chrX:27145424-27145846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
31, 12
               

               
Conread position:
               
218-660
               

               
Cow position:
               
chrX:33000705-33001148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
132, 93
               

               
Conread position:
               
219-451
               

               
Cow position:
               
chrX:17908481-17908253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
133, 58
               

               
Conread position:
               
219-509
               

               
Cow position:
               
chrX:47301101-47300810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
113, 63
               

               
Conread position:
               
219-513
               

               
Cow position:
               
chrX:43780050-43779750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
56, 102
               

               
Conread position:
               
219-626
               

               
Cow position:
               
chrX:29545077-29544671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
111, 48
               

               
Conread position:
               
219-627
               

               
Cow position:
               
chrX:1176180-1175774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
153, 200
               

               
Conread position:
               
219-648
               

               
Cow position:
               
chrX:10252379-10251965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
245, 14
               

               
Conread position:
               
219-655
               

               
Cow position:
               
chrX:36355925-36356347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
149, 31
               

               
Conread position:
               
219-703
               

               
Cow position:
               
chrX:1499472-1499952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
110, 63
               

               
Conread position:
               
221-662
               

               
Cow position:
               
chrX:47484467-47484007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
109, 308
               

               
Conread position:
               
224-368
               

               
Cow position:
               
chrX:45874806-45874947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
107, 56
               

               
Conread position:
               
225-551
               

               
Cow position:
               
chrX:43730406-43730093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
171, 75
               

               
Conread position:
               
226-480
               

               
Cow position:
               
chrX:23785463-23785711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
226-513
               

               
Cow position:
               
chrX:31311835-31312126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 0
               

               
Conread position:
               
226-514
               

               
Cow position:
               
chrX:47362802-47362525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
51, 72
               

               
Conread position:
               
227-367
               

               
Cow position:
               
chrX:24149450-24149588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
228-565
               

               
Cow position:
               
chrX:42235722-42235371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
42, 72
               

               
Conread position:
               
230-401
               

               
Cow position:
               
chrX:31256681-31256852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
131, 54
               

               
Conread position:
               
233-642
               

               
Cow position:
               
chrX:32820846-32821271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
98, 12
               

               
Conread position:
               
234-558
               

               
Cow position:
               
chrX:36067837-36068153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
133, 48
               

               
Conread position:
               
238-601
               

               
Cow position:
               
chrX:24288111-24287742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
63, 102
               

               
Conread position:
               
239-642
               

               
Cow position:
               
chrX:47186498-47186095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
92, 46
               

               
Conread position:
               
241-626
               

               
Cow position:
               
chrX:4279290-4278904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
87, 119
               

               
Conread position:
               
241-660
               

               
Cow position:
               
chrX:18485619-18486049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
89, 180
               

               
Conread position:
               
244-651
               

               
Cow position:
               
chrX:6407376-6407784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
149, 60
               

               
Conread position:
               
245-642
               

               
Cow position:
               
chrX:34792482-34792091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
110, 61
               

               
Conread position:
               
245-655
               

               
Cow position:
               
chrX:4398954-4399358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
155, 131
               

               
Conread position:
               
246-656
               

               
Cow position:
               
chrX:25208017-25207619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
84, 123
               

               
Conread position:
               
247-631
               

               
Cow position:
               
chrX:27227955-27228349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
83, 15
               

               
Conread position:
               
250-620
               

               
Cow position:
               
chrX:41068561-41068929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
124, 25
               

               
Conread position:
               
253-506
               

               
Cow position:
               
chrX:10128841-10129098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
90, 76
               

               
Conread position:
               
255-653
               

               
Cow position:
               
chrX:8917231-8917636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
75, 159
               

               
Conread position:
               
260-591
               

               
Cow position:
               
chrX:31252258-31252589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
90, 153
               

               
Conread position:
               
264-506
               

               
Cow position:
               
chrX:12405544-12405291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
5, 166
               

               
Conread position:
               
264-526
               

               
Cow position:
               
chrX:38066606-38066345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
132, 85
               

               
Conread position:
               
267-563
               

               
Cow position:
               
chrX:21986446-21986140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
10, 192
               

               
Conread position:
               
267-644
               

               
Cow position:
               
chrX:20584169-20584546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 168
               

               
Conread position:
               
268-523
               

               
Cow position:
               
chrX:39415518-39415263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
89, 26
               

               
Conread position:
               
268-659
               

               
Cow position:
               
chrX:5118654-5118252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
101, 118
               

               
Conread position:
               
276-512
               

               
Cow position:
               
chrX:29680404-29680165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
74, 130
               

               
Conread position:
               
276-625
               

               
Cow position:
               
chrX:34313889-34314235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
91, 39
               

               
Conread position:
               
276-662
               

               
Cow position:
               
chrX:29723597-29724006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
54, 126
               

               
Conread position:
               
279-501
               

               
Cow position:
               
chrX:9365815-9365591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
88, 14
               

               
Conread position:
               
281-563
               

               
Cow position:
               
chrX:616401-616116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
86, 133
               

               
Conread position:
               
283-660
               

               
Cow position:
               
chrX:41027020-41027407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
79, 49
               

               
Conread position:
               
285-625
               

               
Cow position:
               
chrX:41870938-41871271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
108, 69
               

               
Conread position:
               
289-657
               

               
Cow position:
               
chrX:34505178-34504809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
107, 284
               

               
Conread position:
               
289-660
               

               
Cow position:
               
chrX:45976789-45977175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
41, 328
               

               
Conread position:
               
290-651
               

               
Cow position:
               
chrX:43115021-43115391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
29, 106
               

               
Conread position:
               
303-627
               

               
Cow position:
               
chrX:26881685-26881346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
64, 307
               

               
Conread position:
               
304-653
               

               
Cow position:
               
chrX:24331662-24332020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
59, 101
               

               
Conread position:
               
306-653
               

               
Cow position:
               
chrX:42927933-42927589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
38, 106
               

               
Conread position:
               
318-643
               

               
Cow position:
               
chrX:34837156-34836839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
59, 41
               

               
Conread position:
               
332-672
               

               
Cow position:
               
chrX:1466073-1466423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
23, 227
               

               
Conread position:
               
351-659
               

               
Cow position:
               
chrX:4153101-4152797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
16, 182
               

               
Conread position:
               
354-663
               

               
Cow position:
               
chrX:20957185-20957488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
14, 51
               

               
Conread position:
               
367-644
               

               
Cow position:
               
chrX:22393035-22392753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
29, 204
               

               
Conread position:
               
402-664
               

               
Cow position:
               
chrX:27668971-27668704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
131, 22
               

               
Conread position:
               
403-655
               

               
Cow position:
               
chrX:39290346-39290597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
130, 140
               
Show alignments to all cow chromosomes.