Cow genome map
Conread name: | Ss1.1-Pig3-SRG8023B06.5 |
Conread position: | 1-308 |
Cow position: | chr1:98809445-98809754 (view UCSC Genome Browser custom track) |
Alignm length: | 316 |
Alignm identity: | 232 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 42, 122 |
Conread position: | 1-340 |
Cow position: | chr1:77166757-77167091 (view UCSC Genome Browser custom track) |
Alignm length: | 346 |
Alignm identity: | 247 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 42, 119 |
Conread position: | 1-456 |
Cow position: | chr1:77191943-77192404 (view UCSC Genome Browser custom track) |
Alignm length: | 473 |
Alignm identity: | 337 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 42, 29 |
Conread position: | 1-475 |
Cow position: | chr1:89302843-89302350 (view UCSC Genome Browser custom track) |
Alignm length: | 502 |
Alignm identity: | 356 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 11, 128 |
Conread position: | 1-480 |
Cow position: | chr1:68946920-68947392 (view UCSC Genome Browser custom track) |
Alignm length: | 483 |
Alignm identity: | 430 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 42, 27 |
Conread position: | 3-169 |
Cow position: | chr1:22441217-22441384 (view UCSC Genome Browser custom track) |
Alignm length: | 169 |
Alignm identity: | 130 |
Alignm E-value: | 5e-31 |
Alignm gaps (pig, cow): | 40, 115 |
Conread position: | 3-318 |
Cow position: | chr1:67339134-67339445 (view UCSC Genome Browser custom track) |
Alignm length: | 321 |
Alignm identity: | 236 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 40, 110 |
Conread position: | 3-331 |
Cow position: | chr1:82157501-82157824 (view UCSC Genome Browser custom track) |
Alignm length: | 333 |
Alignm identity: | 244 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 40, 110 |
Conread position: | 3-477 |
Cow position: | chr1:13794256-13794721 (view UCSC Genome Browser custom track) |
Alignm length: | 481 |
Alignm identity: | 371 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 40, 105 |
Conread position: | 3-477 |
Cow position: | chr1:28960220-28959755 (view UCSC Genome Browser custom track) |
Alignm length: | 481 |
Alignm identity: | 374 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 40, 105 |
Conread position: | 3-477 |
Cow position: | chr1:59340623-59340164 (view UCSC Genome Browser custom track) |
Alignm length: | 481 |
Alignm identity: | 351 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 40, 116 |
Conread position: | 3-477 |
Cow position: | chr1:67912229-67912700 (view UCSC Genome Browser custom track) |
Alignm length: | 482 |
Alignm identity: | 376 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 40, 116 |
Conread position: | 3-477 |
Cow position: | chr1:98519544-98520016 (view UCSC Genome Browser custom track) |
Alignm length: | 483 |
Alignm identity: | 364 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 40, 116 |
Conread position: | 4-477 |
Cow position: | chr1:77654730-77655192 (view UCSC Genome Browser custom track) |
Alignm length: | 483 |
Alignm identity: | 348 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 16, 110 |
Conread position: | 4-480 |
Cow position: | chr1:68437126-68436653 (view UCSC Genome Browser custom track) |
Alignm length: | 490 |
Alignm identity: | 335 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 39, 14 |
Conread position: | 11-266 |
Cow position: | chr1:101750649-101750392 (view UCSC Genome Browser custom track) |
Alignm length: | 265 |
Alignm identity: | 189 |
Alignm E-value: | 2e-31 |
Alignm gaps (pig, cow): | 32, 65 |
Conread position: | 11-305 |
Cow position: | chr1:26540750-26541032 (view UCSC Genome Browser custom track) |
Alignm length: | 302 |
Alignm identity: | 210 |
Alignm E-value: | 1e-28 |
Alignm gaps (pig, cow): | 32, 65 |
Conread position: | 11-335 |
Cow position: | chr1:40849496-40849176 (view UCSC Genome Browser custom track) |
Alignm length: | 333 |
Alignm identity: | 236 |
Alignm E-value: | 4.99997e-41 |
Alignm gaps (pig, cow): | 81, 32 |
Conread position: | 11-353 |
Cow position: | chr1:91510461-91510134 (view UCSC Genome Browser custom track) |
Alignm length: | 352 |
Alignm identity: | 251 |
Alignm E-value: | 4e-38 |
Alignm gaps (pig, cow): | 32, 62 |
Conread position: | 11-353 |
Cow position: | chr1:101936746-101937074 (view UCSC Genome Browser custom track) |
Alignm length: | 350 |
Alignm identity: | 246 |
Alignm E-value: | 1e-37 |
Alignm gaps (pig, cow): | 32, 65 |
Conread position: | 11-359 |
Cow position: | chr1:36027841-36028175 (view UCSC Genome Browser custom track) |
Alignm length: | 356 |
Alignm identity: | 248 |
Alignm E-value: | 1e-36 |
Alignm gaps (pig, cow): | 32, 65 |
Conread position: | 11-384 |
Cow position: | chr1:19330817-19331175 (view UCSC Genome Browser custom track) |
Alignm length: | 382 |
Alignm identity: | 274 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 81, 31 |
Conread position: | 11-384 |
Cow position: | chr1:76903857-76904217 (view UCSC Genome Browser custom track) |
Alignm length: | 383 |
Alignm identity: | 275 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 62 |
Conread position: | 11-384 |
Cow position: | chr1:79820962-79821318 (view UCSC Genome Browser custom track) |
Alignm length: | 383 |
Alignm identity: | 268 |
Alignm E-value: | 1e-37 |
Alignm gaps (pig, cow): | 32, 62 |
Conread position: | 11-392 |
Cow position: | chr1:66058706-66059073 (view UCSC Genome Browser custom track) |
Alignm length: | 392 |
Alignm identity: | 281 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 33, 65 |
Conread position: | 11-474 |
Cow position: | chr1:21349933-21349484 (view UCSC Genome Browser custom track) |
Alignm length: | 475 |
Alignm identity: | 351 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 39, 32 |
Conread position: | 11-480 |
Cow position: | chr1:73854104-73853645 (view UCSC Genome Browser custom track) |
Alignm length: | 479 |
Alignm identity: | 336 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 65 |
Conread position: | 11-480 |
Cow position: | chr1:76209825-76209372 (view UCSC Genome Browser custom track) |
Alignm length: | 479 |
Alignm identity: | 356 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 81, 32 |
Conread position: | 11-480 |
Cow position: | chr1:82494570-82495006 (view UCSC Genome Browser custom track) |
Alignm length: | 479 |
Alignm identity: | 340 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 62 |
Conread position: | 11-576 |
Cow position: | chr1:27658798-27659352 (view UCSC Genome Browser custom track) |
Alignm length: | 592 |
Alignm identity: | 401 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 62 |
Conread position: | 11-576 |
Cow position: | chr1:31469707-31469163 (view UCSC Genome Browser custom track) |
Alignm length: | 591 |
Alignm identity: | 404 |
Alignm E-value: | 8.40779e-45 |
Alignm gaps (pig, cow): | 32, 41 |
Conread position: | 11-576 |
Cow position: | chr1:39242318-39242862 (view UCSC Genome Browser custom track) |
Alignm length: | 582 |
Alignm identity: | 400 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 62 |
Conread position: | 11-576 |
Cow position: | chr1:40951655-40951084 (view UCSC Genome Browser custom track) |
Alignm length: | 589 |
Alignm identity: | 401 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 75 |
Conread position: | 11-576 |
Cow position: | chr1:58337258-58337834 (view UCSC Genome Browser custom track) |
Alignm length: | 602 |
Alignm identity: | 414 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 62 |
Conread position: | 11-576 |
Cow position: | chr1:66098574-66099134 (view UCSC Genome Browser custom track) |
Alignm length: | 597 |
Alignm identity: | 414 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 33, 65 |
Conread position: | 11-576 |
Cow position: | chr1:71823453-71822903 (view UCSC Genome Browser custom track) |
Alignm length: | 592 |
Alignm identity: | 408 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 62 |
Conread position: | 11-576 |
Cow position: | chr1:78129561-78130115 (view UCSC Genome Browser custom track) |
Alignm length: | 591 |
Alignm identity: | 410 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 65 |
Conread position: | 11-576 |
Cow position: | chr1:87841263-87841808 (view UCSC Genome Browser custom track) |
Alignm length: | 592 |
Alignm identity: | 405 |
Alignm E-value: | 8.40779e-45 |
Alignm gaps (pig, cow): | 32, 62 |
Conread position: | 11-576 |
Cow position: | chr1:91838222-91837651 (view UCSC Genome Browser custom track) |
Alignm length: | 590 |
Alignm identity: | 405 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 62 |
Conread position: | 11-576 |
Cow position: | chr1:94664077-94664626 (view UCSC Genome Browser custom track) |
Alignm length: | 592 |
Alignm identity: | 412 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 62 |
Conread position: | 11-576 |
Cow position: | chr1:95417733-95418283 (view UCSC Genome Browser custom track) |
Alignm length: | 593 |
Alignm identity: | 413 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 62 |
Conread position: | 11-576 |
Cow position: | chr1:96387794-96387244 (view UCSC Genome Browser custom track) |
Alignm length: | 593 |
Alignm identity: | 413 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 62 |
Conread position: | 11-576 |
Cow position: | chr1:100833605-100834155 (view UCSC Genome Browser custom track) |
Alignm length: | 592 |
Alignm identity: | 411 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 65 |
Conread position: | 11-576 |
Cow position: | chr1:102445930-102445380 (view UCSC Genome Browser custom track) |
Alignm length: | 592 |
Alignm identity: | 407 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 65 |
Conread position: | 11-583 |
Cow position: | chr1:55205081-55204525 (view UCSC Genome Browser custom track) |
Alignm length: | 599 |
Alignm identity: | 418 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 62 |
Conread position: | 13-566 |
Cow position: | chr1:31325822-31325262 (view UCSC Genome Browser custom track) |
Alignm length: | 578 |
Alignm identity: | 396 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 30, 63 |
Conread position: | 23-495 |
Cow position: | chr1:69252225-69252670 (view UCSC Genome Browser custom track) |
Alignm length: | 476 |
Alignm identity: | 386 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 21, 84 |
Conread position: | 23-588 |
Cow position: | chr1:29025095-29024524 (view UCSC Genome Browser custom track) |
Alignm length: | 588 |
Alignm identity: | 450 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 95 |
Conread position: | 30-576 |
Cow position: | chr1:58205764-58206294 (view UCSC Genome Browser custom track) |
Alignm length: | 573 |
Alignm identity: | 395 |
Alignm E-value: | 2.8026e-45 |
Alignm gaps (pig, cow): | 13, 33 |
Conread position: | 71-480 |
Cow position: | chr1:77167573-77167980 (view UCSC Genome Browser custom track) |
Alignm length: | 421 |
Alignm identity: | 345 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 155, 46 |
Conread position: | 79-473 |
Cow position: | chr1:94758385-94758012 (view UCSC Genome Browser custom track) |
Alignm length: | 397 |
Alignm identity: | 318 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 147, 38 |
Conread position: | 130-459 |
Cow position: | chr1:39188615-39188299 (view UCSC Genome Browser custom track) |
Alignm length: | 339 |
Alignm identity: | 236 |
Alignm E-value: | 2e-31 |
Alignm gaps (pig, cow): | 92, 46 |
Conread position: | 130-576 |
Cow position: | chr1:16954211-16953777 (view UCSC Genome Browser custom track) |
Alignm length: | 466 |
Alignm identity: | 335 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 97, 21 |
Conread position: | 130-588 |
Cow position: | chr1:67352426-67351973 (view UCSC Genome Browser custom track) |
Alignm length: | 477 |
Alignm identity: | 351 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 97, 44 |
Conread position: | 134-384 |
Cow position: | chr1:99327030-99326791 (view UCSC Genome Browser custom track) |
Alignm length: | 252 |
Alignm identity: | 193 |
Alignm E-value: | 8.40779e-45 |
Alignm gaps (pig, cow): | 93, 36 |
Conread position: | 153-588 |
Cow position: | chr1:91510082-91509660 (view UCSC Genome Browser custom track) |
Alignm length: | 450 |
Alignm identity: | 314 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 74, 21 |
Conread position: | 188-391 |
Cow position: | chr1:51547520-51547331 (view UCSC Genome Browser custom track) |
Alignm length: | 205 |
Alignm identity: | 155 |
Alignm E-value: | 1e-29 |
Alignm gaps (pig, cow): | 198, 30 |
Conread position: | 208-477 |
Cow position: | chr1:15528136-15528414 (view UCSC Genome Browser custom track) |
Alignm length: | 284 |
Alignm identity: | 204 |
Alignm E-value: | 9e-36 |
Alignm gaps (pig, cow): | 17, 98 |
Conread position: | 215-477 |
Cow position: | chr1:2463790-2463519 (view UCSC Genome Browser custom track) |
Alignm length: | 276 |
Alignm identity: | 196 |
Alignm E-value: | 7e-34 |
Alignm gaps (pig, cow): | 10, 91 |
Conread position: | 215-477 |
Cow position: | chr1:29140100-29139828 (view UCSC Genome Browser custom track) |
Alignm length: | 277 |
Alignm identity: | 197 |
Alignm E-value: | 2e-33 |
Alignm gaps (pig, cow): | 10, 96 |
Conread position: | 215-477 |
Cow position: | chr1:57806235-57805966 (view UCSC Genome Browser custom track) |
Alignm length: | 274 |
Alignm identity: | 195 |
Alignm E-value: | 3e-35 |
Alignm gaps (pig, cow): | 19, 94 |
Conread position: | 215-477 |
Cow position: | chr1:81789131-81788863 (view UCSC Genome Browser custom track) |
Alignm length: | 273 |
Alignm identity: | 192 |
Alignm E-value: | 7e-34 |
Alignm gaps (pig, cow): | 209, 89 |
Conread position: | 215-477 |
Cow position: | chr1:97630654-97630382 (view UCSC Genome Browser custom track) |
Alignm length: | 277 |
Alignm identity: | 198 |
Alignm E-value: | 2e-34 |
Alignm gaps (pig, cow): | 10, 96 |
Conread position: | 215-477 |
Cow position: | chr1:100456857-100456587 (view UCSC Genome Browser custom track) |
Alignm length: | 276 |
Alignm identity: | 196 |
Alignm E-value: | 6e-33 |
Alignm gaps (pig, cow): | 10, 53 |
Conread position: | 216-477 |
Cow position: | chr1:8652931-8652667 (view UCSC Genome Browser custom track) |
Alignm length: | 268 |
Alignm identity: | 183 |
Alignm E-value: | 4e-29 |
Alignm gaps (pig, cow): | 9, 95 |
Conread position: | 226-384 |
Cow position: | chr1:61296174-61296021 (view UCSC Genome Browser custom track) |
Alignm length: | 160 |
Alignm identity: | 124 |
Alignm E-value: | 1e-26 |
Alignm gaps (pig, cow): | 123, 54 |
Conread position: | 292-477 |
Cow position: | chr1:77664642-77664818 (view UCSC Genome Browser custom track) |
Alignm length: | 186 |
Alignm identity: | 133 |
Alignm E-value: | 6e-22 |
Alignm gaps (pig, cow): | 15, 0 |
Conread position: | 480-581 |
Cow position: | chr1:68947428-68947532 (view UCSC Genome Browser custom track) |
Alignm length: | 105 |
Alignm identity: | 90 |
Alignm E-value: | 7e-24 |
Alignm gaps (pig, cow): | 34, 0 |
Show alignments to all cow chromosomes.