Cow genome map

Conread name: Ss1.1-Pig3-SRG8023B06.5

Conread position: 1-308
Cow position: chr1:98809445-98809754 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 122

Conread position: 1-340
Cow position: chr1:77166757-77167091 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 119

Conread position: 1-456
Cow position: chr1:77191943-77192404 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 29

Conread position: 1-475
Cow position: chr1:89302843-89302350 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 128

Conread position: 1-480
Cow position: chr1:68946920-68947392 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 27

Conread position: 3-169
Cow position: chr1:22441217-22441384 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 130
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 40, 115

Conread position: 3-318
Cow position: chr1:67339134-67339445 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 110

Conread position: 3-331
Cow position: chr1:82157501-82157824 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 110

Conread position: 3-477
Cow position: chr1:13794256-13794721 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 105

Conread position: 3-477
Cow position: chr1:28960220-28959755 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 105

Conread position: 3-477
Cow position: chr1:59340623-59340164 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 116

Conread position: 3-477
Cow position: chr1:67912229-67912700 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 116

Conread position: 3-477
Cow position: chr1:98519544-98520016 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 116

Conread position: 4-477
Cow position: chr1:77654730-77655192 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 110

Conread position: 4-480
Cow position: chr1:68437126-68436653 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 14

Conread position: 11-266
Cow position: chr1:101750649-101750392 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 189
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 32, 65

Conread position: 11-305
Cow position: chr1:26540750-26541032 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 210
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 32, 65

Conread position: 11-335
Cow position: chr1:40849496-40849176 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 236
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 81, 32

Conread position: 11-353
Cow position: chr1:91510461-91510134 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 251
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 32, 62

Conread position: 11-353
Cow position: chr1:101936746-101937074 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 246
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 32, 65

Conread position: 11-359
Cow position: chr1:36027841-36028175 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 248
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 32, 65

Conread position: 11-384
Cow position: chr1:19330817-19331175 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 31

Conread position: 11-384
Cow position: chr1:76903857-76904217 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 62

Conread position: 11-384
Cow position: chr1:79820962-79821318 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 268
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 32, 62

Conread position: 11-392
Cow position: chr1:66058706-66059073 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 65

Conread position: 11-474
Cow position: chr1:21349933-21349484 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 32

Conread position: 11-480
Cow position: chr1:73854104-73853645 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 65

Conread position: 11-480
Cow position: chr1:76209825-76209372 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 32

Conread position: 11-480
Cow position: chr1:82494570-82495006 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 62

Conread position: 11-576
Cow position: chr1:27658798-27659352 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 62

Conread position: 11-576
Cow position: chr1:31469707-31469163 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 404
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 32, 41

Conread position: 11-576
Cow position: chr1:39242318-39242862 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 62

Conread position: 11-576
Cow position: chr1:40951655-40951084 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 75

Conread position: 11-576
Cow position: chr1:58337258-58337834 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 62

Conread position: 11-576
Cow position: chr1:66098574-66099134 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 65

Conread position: 11-576
Cow position: chr1:71823453-71822903 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 62

Conread position: 11-576
Cow position: chr1:78129561-78130115 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 65

Conread position: 11-576
Cow position: chr1:87841263-87841808 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 405
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 32, 62

Conread position: 11-576
Cow position: chr1:91838222-91837651 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 62

Conread position: 11-576
Cow position: chr1:94664077-94664626 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 62

Conread position: 11-576
Cow position: chr1:95417733-95418283 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 62

Conread position: 11-576
Cow position: chr1:96387794-96387244 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 62

Conread position: 11-576
Cow position: chr1:100833605-100834155 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 65

Conread position: 11-576
Cow position: chr1:102445930-102445380 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 65

Conread position: 11-583
Cow position: chr1:55205081-55204525 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 62

Conread position: 13-566
Cow position: chr1:31325822-31325262 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 63

Conread position: 23-495
Cow position: chr1:69252225-69252670 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 84

Conread position: 23-588
Cow position: chr1:29025095-29024524 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 95

Conread position: 30-576
Cow position: chr1:58205764-58206294 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 395
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 13, 33

Conread position: 71-480
Cow position: chr1:77167573-77167980 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 46

Conread position: 79-473
Cow position: chr1:94758385-94758012 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 38

Conread position: 130-459
Cow position: chr1:39188615-39188299 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 236
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 92, 46

Conread position: 130-576
Cow position: chr1:16954211-16953777 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 21

Conread position: 130-588
Cow position: chr1:67352426-67351973 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 44

Conread position: 134-384
Cow position: chr1:99327030-99326791 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 193
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 93, 36

Conread position: 153-588
Cow position: chr1:91510082-91509660 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 314
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 74, 21

Conread position: 188-391
Cow position: chr1:51547520-51547331 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 155
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 198, 30

Conread position: 208-477
Cow position: chr1:15528136-15528414 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 204
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 17, 98

Conread position: 215-477
Cow position: chr1:2463790-2463519 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 196
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 10, 91

Conread position: 215-477
Cow position: chr1:29140100-29139828 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 197
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 10, 96

Conread position: 215-477
Cow position: chr1:57806235-57805966 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 195
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 19, 94

Conread position: 215-477
Cow position: chr1:81789131-81788863 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 192
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 209, 89

Conread position: 215-477
Cow position: chr1:97630654-97630382 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 198
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 10, 96

Conread position: 215-477
Cow position: chr1:100456857-100456587 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 196
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 10, 53

Conread position: 216-477
Cow position: chr1:8652931-8652667 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 183
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 9, 95

Conread position: 226-384
Cow position: chr1:61296174-61296021 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 124
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 123, 54

Conread position: 292-477
Cow position: chr1:77664642-77664818 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 133
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 15, 0

Conread position: 480-581
Cow position: chr1:68947428-68947532 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 90
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 34, 0

Show alignments to all cow chromosomes.