Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8023B06.5 |
| Conread position: | 1-456 |
| Cow position: | chr10:40437042-40437503 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 118 |
| Conread position: | 1-480 |
| Cow position: | chr10:7349124-7348627 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 131 |
| Conread position: | 3-310 |
| Cow position: | chr10:63918901-63919205 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 116 |
| Conread position: | 3-389 |
| Cow position: | chr10:63981275-63981650 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 115 |
| Conread position: | 3-477 |
| Cow position: | chr10:39909163-39908710 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 92 |
| Conread position: | 3-485 |
| Cow position: | chr10:21701182-21701652 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 115 |
| Conread position: | 4-477 |
| Cow position: | chr10:53400070-53399595 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 115 |
| Conread position: | 8-477 |
| Cow position: | chr10:4826441-4826907 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 110 |
| Conread position: | 10-220 |
| Cow position: | chr10:17763735-17763953 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 33, 178 |
| Conread position: | 10-417 |
| Cow position: | chr10:21482194-21481773 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 180 |
| Conread position: | 10-456 |
| Cow position: | chr10:44860161-44859702 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 179 |
| Conread position: | 11-218 |
| Cow position: | chr10:48761217-48761008 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 32, 39 |
| Conread position: | 11-319 |
| Cow position: | chr10:1793656-1793361 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 223 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-328 |
| Cow position: | chr10:23492144-23491840 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 32, 65 |
| Conread position: | 11-384 |
| Cow position: | chr10:14989808-14989448 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 272 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-384 |
| Cow position: | chr10:40144333-40144693 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-384 |
| Cow position: | chr10:55104733-55105093 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-392 |
| Cow position: | chr10:11651024-11650666 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 275 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 32, 46 |
| Conread position: | 11-480 |
| Cow position: | chr10:45768430-45767979 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-480 |
| Cow position: | chr10:58688895-58688442 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 56 |
| Conread position: | 11-495 |
| Cow position: | chr10:30018593-30019091 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 65 |
| Conread position: | 11-566 |
| Cow position: | chr10:69506626-69507165 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 65 |
| Conread position: | 11-576 |
| Cow position: | chr10:4666192-4665643 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-576 |
| Cow position: | chr10:6208621-6209181 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 40 |
| Conread position: | 11-576 |
| Cow position: | chr10:17587360-17586799 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-576 |
| Cow position: | chr10:19293014-19292449 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-576 |
| Cow position: | chr10:23490756-23490210 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 65 |
| Conread position: | 11-576 |
| Cow position: | chr10:27008288-27007722 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-576 |
| Cow position: | chr10:29108604-29108059 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 52 |
| Conread position: | 11-576 |
| Cow position: | chr10:29203941-29204485 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 32 |
| Conread position: | 11-576 |
| Cow position: | chr10:53114251-53113701 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-576 |
| Cow position: | chr10:53476333-53476900 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-576 |
| Cow position: | chr10:55658271-55657727 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-576 |
| Cow position: | chr10:59222918-59222369 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-576 |
| Cow position: | chr10:68327233-68327783 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-576 |
| Cow position: | chr10:68808089-68808656 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 52 |
| Conread position: | 23-127 |
| Cow position: | chr10:51745596-51745489 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 21, 97 |
| Conread position: | 23-480 |
| Cow position: | chr10:16457689-16457255 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 89 |
| Conread position: | 23-480 |
| Cow position: | chr10:16466675-16466240 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 89 |
| Conread position: | 116-454 |
| Cow position: | chr10:51745235-51744917 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 58 |
| Conread position: | 130-495 |
| Cow position: | chr10:55877023-55876673 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 262 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 92, 46 |
| Conread position: | 130-495 |
| Cow position: | chr10:59215599-59215252 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 261 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 92, 46 |
| Conread position: | 167-576 |
| Cow position: | chr10:27518783-27519186 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 267 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 60, 106 |
| Conread position: | 207-477 |
| Cow position: | chr10:16664430-16664702 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 160 |
| Conread position: | 207-576 |
| Cow position: | chr10:48760740-48760373 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 66 |
| Conread position: | 207-576 |
| Cow position: | chr10:61536831-61536462 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 276 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 20, 66 |
| Conread position: | 215-477 |
| Cow position: | chr10:21697741-21698012 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 10, 96 |
| Conread position: | 215-477 |
| Cow position: | chr10:44005130-44005401 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 10, 96 |
| Conread position: | 215-477 |
| Cow position: | chr10:53040212-53040483 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 10, 96 |
| Conread position: | 215-477 |
| Cow position: | chr10:68184690-68184419 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 197 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 10, 96 |
| Conread position: | 216-477 |
| Cow position: | chr10:37122731-37123001 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 9, 95 |
| Conread position: | 224-477 |
| Cow position: | chr10:68128888-68128633 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 186 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 44, 19 |
| Conread position: | 256-480 |
| Cow position: | chr10:60036669-60036875 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 126, 16 |
| Conread position: | 292-477 |
| Cow position: | chr10:32375850-32375675 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 467-575 |
| Cow position: | chr10:53399567-53399457 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 96 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 50, 13 |
| Conread position: | 482-581 |
| Cow position: | chr10:16664744-16664846 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 86 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 35, 0 |
Show alignments to all cow chromosomes.