Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8023B06.5 |
| Conread position: | 1-584 |
| Cow position: | chr11:8008160-8007565 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 120 |
| Conread position: | 3-167 |
| Cow position: | chr11:4197844-4198004 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 40, 105 |
| Conread position: | 3-477 |
| Cow position: | chr11:34705310-34705775 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 115 |
| Conread position: | 3-477 |
| Cow position: | chr11:35436160-35435689 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 116 |
| Conread position: | 3-477 |
| Cow position: | chr11:37126686-37126214 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 116 |
| Conread position: | 3-485 |
| Cow position: | chr11:65364201-65363730 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 115 |
| Conread position: | 11-361 |
| Cow position: | chr11:7507336-7506998 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 254 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-384 |
| Cow position: | chr11:13926914-13927272 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 31 |
| Conread position: | 11-384 |
| Cow position: | chr11:78670672-78671032 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 168 |
| Conread position: | 11-391 |
| Cow position: | chr11:67142164-67141799 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 31 |
| Conread position: | 11-392 |
| Cow position: | chr11:42217061-42216700 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 272 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 32, 168 |
| Conread position: | 11-480 |
| Cow position: | chr11:17843480-17843043 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 52 |
| Conread position: | 11-546 |
| Cow position: | chr11:50755624-50756143 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-576 |
| Cow position: | chr11:3203208-3203749 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 403 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-576 |
| Cow position: | chr11:4037059-4036488 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 65 |
| Conread position: | 11-576 |
| Cow position: | chr11:9218114-9217568 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 405 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 32, 65 |
| Conread position: | 11-576 |
| Cow position: | chr11:21634936-21635501 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-576 |
| Cow position: | chr11:32090795-32091341 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 52 |
| Conread position: | 11-576 |
| Cow position: | chr11:36427004-36427553 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 47 |
| Conread position: | 11-576 |
| Cow position: | chr11:36429297-36429846 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 47 |
| Conread position: | 11-576 |
| Cow position: | chr11:38165788-38165223 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 65 |
| Conread position: | 11-576 |
| Cow position: | chr11:40568764-40568221 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 52 |
| Conread position: | 11-576 |
| Cow position: | chr11:50702059-50702609 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 74 |
| Conread position: | 11-576 |
| Cow position: | chr11:56662394-56662944 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 65 |
| Conread position: | 11-576 |
| Cow position: | chr11:66145361-66144811 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-576 |
| Cow position: | chr11:69234705-69234158 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 13-415 |
| Cow position: | chr11:74301075-74301463 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 255 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 30, 63 |
| Conread position: | 13-480 |
| Cow position: | chr11:52573010-52572586 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 322 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 30, 63 |
| Conread position: | 13-576 |
| Cow position: | chr11:53655972-53656530 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 63 |
| Conread position: | 14-480 |
| Cow position: | chr11:64990799-64990352 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 59 |
| Conread position: | 23-480 |
| Cow position: | chr11:8011244-8010811 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 68 |
| Conread position: | 23-480 |
| Cow position: | chr11:58544871-58545308 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 96 |
| Conread position: | 31-477 |
| Cow position: | chr11:16137306-16137737 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 82 |
| Conread position: | 116-477 |
| Cow position: | chr11:38085743-38085388 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 259 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 308, 59 |
| Conread position: | 117-456 |
| Cow position: | chr11:77623442-77623103 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 58 |
| Conread position: | 130-480 |
| Cow position: | chr11:3205182-3205507 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 44 |
| Conread position: | 190-477 |
| Cow position: | chr11:4198089-4198377 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 116 |
| Conread position: | 215-478 |
| Cow position: | chr11:57840668-57840397 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 19, 94 |
| Conread position: | 308-477 |
| Cow position: | chr11:67777676-67777500 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 116, 50 |
Show alignments to all cow chromosomes.