Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8023B06.5 |
| Conread position: | 7-167 |
| Cow position: | chr13:50124781-50124622 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 36, 105 |
| Conread position: | 7-474 |
| Cow position: | chr13:54074899-54074455 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 110 |
| Conread position: | 10-417 |
| Cow position: | chr13:39901710-39902128 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 292 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 53, 117 |
| Conread position: | 10-481 |
| Cow position: | chr13:23402651-23402162 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 118 |
| Conread position: | 11-391 |
| Cow position: | chr13:2108525-2108147 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 65 |
| Conread position: | 11-392 |
| Cow position: | chr13:10093916-10094277 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 279 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-392 |
| Cow position: | chr13:28900650-28900272 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 12 |
| Conread position: | 11-480 |
| Cow position: | chr13:59059715-59059256 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 65 |
| Conread position: | 11-480 |
| Cow position: | chr13:59061625-59061166 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 65 |
| Conread position: | 11-507 |
| Cow position: | chr13:22615361-22615858 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 52 |
| Conread position: | 11-566 |
| Cow position: | chr13:60694141-60693586 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-576 |
| Cow position: | chr13:18755720-18756270 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 65 |
| Conread position: | 11-576 |
| Cow position: | chr13:26298110-26298654 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-576 |
| Cow position: | chr13:30833304-30832762 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 65 |
| Conread position: | 11-576 |
| Cow position: | chr13:33297603-33298148 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 65 |
| Conread position: | 11-576 |
| Cow position: | chr13:34505061-34505605 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 407 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 32, 65 |
| Conread position: | 11-576 |
| Cow position: | chr13:54662787-54662233 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 65 |
| Conread position: | 13-576 |
| Cow position: | chr13:43753739-43753191 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 63 |
| Conread position: | 23-160 |
| Cow position: | chr13:1881273-1881140 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 95-576 |
| Cow position: | chr13:47659187-47658723 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 351 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 8, 83 |
| Conread position: | 125-576 |
| Cow position: | chr13:27434648-27434207 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 49 |
| Conread position: | 130-384 |
| Cow position: | chr13:39067297-39067053 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 44 |
| Conread position: | 130-481 |
| Cow position: | chr13:49968323-49967969 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 46 |
| Conread position: | 130-574 |
| Cow position: | chr13:7714310-7713883 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 256, 44 |
| Conread position: | 130-576 |
| Cow position: | chr13:29932-30377 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 256, 44 |
| Conread position: | 174-339 |
| Cow position: | chr13:1881021-1880862 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 49, 99 |
| Conread position: | 188-576 |
| Cow position: | chr13:3057596-3057204 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 277 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 39, 82 |
| Conread position: | 215-477 |
| Cow position: | chr13:28697001-28696730 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 10, 96 |
| Conread position: | 215-477 |
| Cow position: | chr13:60383154-60382888 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 10, 96 |
| Conread position: | 229-477 |
| Cow position: | chr13:53956316-53956067 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 79 |
| Conread position: | 281-576 |
| Cow position: | chr13:38538-38848 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 228 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 105, 5 |
| Conread position: | 292-477 |
| Cow position: | chr13:54257193-54257017 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 57, 15 |
| Conread position: | 338-477 |
| Cow position: | chr13:23407226-23407366 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 82, 26 |
| Conread position: | 482-588 |
| Cow position: | chr13:53956025-53955917 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 90 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 35, 106 |
Show alignments to all cow chromosomes.