Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8023B06.5 |
| Conread position: | 1-275 |
| Cow position: | chr15:32289077-32288802 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 118 |
| Conread position: | 1-456 |
| Cow position: | chr15:38955334-38955799 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 118 |
| Conread position: | 2-473 |
| Cow position: | chr15:4675383-4674912 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 118 |
| Conread position: | 3-167 |
| Cow position: | chr15:41325278-41325439 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 41, 106 |
| Conread position: | 3-388 |
| Cow position: | chr15:28758754-28759135 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 115 |
| Conread position: | 3-477 |
| Cow position: | chr15:3290681-3291150 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 116 |
| Conread position: | 3-477 |
| Cow position: | chr15:33264564-33264100 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 117 |
| Conread position: | 3-477 |
| Cow position: | chr15:35876437-35876910 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 171 |
| Conread position: | 3-477 |
| Cow position: | chr15:38994497-38994967 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 116 |
| Conread position: | 3-477 |
| Cow position: | chr15:52485817-52486284 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 107 |
| Conread position: | 7-485 |
| Cow position: | chr15:26616169-26615702 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 112 |
| Conread position: | 8-477 |
| Cow position: | chr15:27691197-27690739 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 111 |
| Conread position: | 10-456 |
| Cow position: | chr15:29290493-29290033 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 179 |
| Conread position: | 10-481 |
| Cow position: | chr15:32018982-32019471 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 110 |
| Conread position: | 11-374 |
| Cow position: | chr15:17342340-17342699 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 58 |
| Conread position: | 11-486 |
| Cow position: | chr15:48282452-48282891 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-576 |
| Cow position: | chr15:17221467-17220914 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 375 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 32, 65 |
| Conread position: | 11-576 |
| Cow position: | chr15:31278894-31278336 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-576 |
| Cow position: | chr15:42688972-42689542 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 65 |
| Conread position: | 11-576 |
| Cow position: | chr15:50168309-50168870 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 12 |
| Conread position: | 11-576 |
| Cow position: | chr15:53161664-53162199 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-588 |
| Cow position: | chr15:44052318-44052873 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 12-480 |
| Cow position: | chr15:31686439-31685987 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 31 |
| Conread position: | 23-482 |
| Cow position: | chr15:45152321-45151884 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 89 |
| Conread position: | 130-576 |
| Cow position: | chr15:32704097-32703668 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 44 |
| Conread position: | 130-576 |
| Cow position: | chr15:33517544-33517103 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 44 |
| Conread position: | 130-576 |
| Cow position: | chr15:52713181-52713607 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 328 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 112, 44 |
| Conread position: | 188-487 |
| Cow position: | chr15:52067525-52067243 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 85 |
| Conread position: | 197-477 |
| Cow position: | chr15:8434533-8434243 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 202 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 25, 113 |
| Conread position: | 215-477 |
| Cow position: | chr15:2965837-2965567 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 10, 96 |
| Conread position: | 215-477 |
| Cow position: | chr15:13946511-13946780 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 19, 94 |
| Conread position: | 215-477 |
| Cow position: | chr15:47605281-47605553 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 193 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 10, 96 |
| Conread position: | 215-480 |
| Cow position: | chr15:32288840-32288578 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 215-566 |
| Cow position: | chr15:34393318-34393687 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 10, 96 |
| Conread position: | 292-476 |
| Cow position: | chr15:53169765-53169583 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 128, 5 |
| Conread position: | 292-485 |
| Cow position: | chr15:53573480-53573673 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 128, 15 |
| Conread position: | 482-588 |
| Cow position: | chr15:35876952-35877060 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 90 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 35, 106 |
Show alignments to all cow chromosomes.