Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8023B06.5 |
| Conread position: | 1-456 |
| Cow position: | chr16:25439233-25438768 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 118 |
| Conread position: | 3-477 |
| Cow position: | chr16:1564382-1564859 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 115 |
| Conread position: | 3-477 |
| Cow position: | chr16:11469702-11469231 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 116 |
| Conread position: | 3-477 |
| Cow position: | chr16:27098752-27098278 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 122 |
| Conread position: | 3-477 |
| Cow position: | chr16:27112698-27112224 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 122 |
| Conread position: | 3-477 |
| Cow position: | chr16:34459930-34459470 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 115 |
| Conread position: | 3-477 |
| Cow position: | chr16:41057246-41057699 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 115 |
| Conread position: | 3-477 |
| Cow position: | chr16:47260199-47260656 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 110 |
| Conread position: | 3-584 |
| Cow position: | chr16:37710410-37710983 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 50 |
| Conread position: | 3-588 |
| Cow position: | chr16:55130358-55130959 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 116 |
| Conread position: | 7-420 |
| Cow position: | chr16:52795082-52795485 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 110 |
| Conread position: | 7-480 |
| Cow position: | chr16:7124560-7125013 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 111 |
| Conread position: | 10-417 |
| Cow position: | chr16:48952759-48953172 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 180 |
| Conread position: | 10-435 |
| Cow position: | chr16:4424798-4425228 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 180 |
| Conread position: | 11-215 |
| Cow position: | chr16:27712789-27712993 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 89, 32 |
| Conread position: | 11-236 |
| Cow position: | chr16:29128612-29128385 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-353 |
| Cow position: | chr16:47008664-47008336 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-559 |
| Cow position: | chr16:4732784-4732229 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 65 |
| Conread position: | 11-574 |
| Cow position: | chr16:11793-11245 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 52 |
| Conread position: | 11-576 |
| Cow position: | chr16:5982770-5982220 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 65 |
| Conread position: | 11-576 |
| Cow position: | chr16:28093910-28093359 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 65 |
| Conread position: | 11-576 |
| Cow position: | chr16:31832993-31833565 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 65 |
| Conread position: | 11-576 |
| Cow position: | chr16:33865679-33865139 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 65 |
| Conread position: | 11-576 |
| Cow position: | chr16:35223249-35223799 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-576 |
| Cow position: | chr16:44904368-44903821 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 61 |
| Conread position: | 23-480 |
| Cow position: | chr16:10665555-10665991 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 94 |
| Conread position: | 25-392 |
| Cow position: | chr16:48911296-48910948 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 263 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 18, 51 |
| Conread position: | 77-477 |
| Cow position: | chr16:41571081-41571468 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 35 |
| Conread position: | 122-480 |
| Cow position: | chr16:33685137-33685475 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 53 |
| Conread position: | 122-482 |
| Cow position: | chr16:11586562-11586199 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 171 |
| Conread position: | 130-576 |
| Cow position: | chr16:2599867-2600303 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 44 |
| Conread position: | 130-576 |
| Cow position: | chr16:21939568-21939126 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 44 |
| Conread position: | 130-576 |
| Cow position: | chr16:23510375-23509939 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 43 |
| Conread position: | 130-576 |
| Cow position: | chr16:55581905-55581479 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 332 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 252, 44 |
| Conread position: | 188-384 |
| Cow position: | chr16:1649539-1649357 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 161, 32 |
Show alignments to all cow chromosomes.