Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8023B06.5 |
| Conread position: | 1-456 |
| Cow position: | chr18:16037566-16037102 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 118 |
| Conread position: | 3-475 |
| Cow position: | chr18:1407246-1406788 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 95 |
| Conread position: | 3-477 |
| Cow position: | chr18:16067154-16067618 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 110 |
| Conread position: | 3-477 |
| Cow position: | chr18:30382472-30381999 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 116 |
| Conread position: | 3-477 |
| Cow position: | chr18:46043393-46042925 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 116 |
| Conread position: | 3-477 |
| Cow position: | chr18:51741576-51741114 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 110 |
| Conread position: | 7-276 |
| Cow position: | chr18:51889910-51890173 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 36, 106 |
| Conread position: | 7-477 |
| Cow position: | chr18:21179394-21178920 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 112 |
| Conread position: | 10-225 |
| Cow position: | chr18:28301421-28301194 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 33, 182 |
| Conread position: | 10-417 |
| Cow position: | chr18:47729473-47729888 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 282 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 38, 180 |
| Conread position: | 10-417 |
| Cow position: | chr18:55159258-55159672 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 289 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 33, 128 |
| Conread position: | 10-456 |
| Cow position: | chr18:52245700-52246161 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 180 |
| Conread position: | 11-270 |
| Cow position: | chr18:55114677-55114938 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 199 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 81, 32 |
| Conread position: | 11-384 |
| Cow position: | chr18:24011034-24010674 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-392 |
| Cow position: | chr18:35896014-35896390 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-576 |
| Cow position: | chr18:127439-127979 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-576 |
| Cow position: | chr18:7486475-7485926 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-576 |
| Cow position: | chr18:23056795-23056245 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-576 |
| Cow position: | chr18:36254003-36254562 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 47 |
| Conread position: | 11-576 |
| Cow position: | chr18:39868608-39868058 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 52 |
| Conread position: | 11-576 |
| Cow position: | chr18:54109198-54109748 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 65 |
| Conread position: | 11-576 |
| Cow position: | chr18:54705547-54706092 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 408 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 15-283 |
| Cow position: | chr18:38650152-38650418 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 103 |
| Conread position: | 15-480 |
| Cow position: | chr18:38656173-38656617 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 103 |
| Conread position: | 23-480 |
| Cow position: | chr18:48102330-48102762 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 95 |
| Conread position: | 23-480 |
| Cow position: | chr18:50628247-50628682 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 68 |
| Conread position: | 42-224 |
| Cow position: | chr18:38654334-38654157 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 164 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 117-477 |
| Cow position: | chr18:56029113-56028763 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 54 |
| Conread position: | 177-576 |
| Cow position: | chr18:50116763-50116360 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 291 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 50, 96 |
| Conread position: | 215-477 |
| Cow position: | chr18:6445299-6445570 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 198 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 10, 96 |
| Conread position: | 215-477 |
| Cow position: | chr18:40142765-40142495 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 10, 96 |
| Conread position: | 215-477 |
| Cow position: | chr18:51446247-51446518 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 10, 96 |
| Conread position: | 249-392 |
| Cow position: | chr18:38650563-38650426 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 137, 23 |
| Conread position: | 249-477 |
| Cow position: | chr18:21599805-21600025 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 44, 59 |
| Conread position: | 482-588 |
| Cow position: | chr18:1406744-1406636 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 90 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 32, 106 |
Show alignments to all cow chromosomes.