Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8023B06.5 |
| Conread position: | 1-417 |
| Cow position: | chr3:12981006-12981424 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 118 |
| Conread position: | 1-456 |
| Cow position: | chr3:12982715-12983180 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 118 |
| Conread position: | 1-456 |
| Cow position: | chr3:80464432-80464896 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 118 |
| Conread position: | 3-461 |
| Cow position: | chr3:70473263-70473709 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 110 |
| Conread position: | 3-477 |
| Cow position: | chr3:1040628-1040157 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 110 |
| Conread position: | 3-477 |
| Cow position: | chr3:48576863-48576413 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 38 |
| Conread position: | 3-477 |
| Cow position: | chr3:82642327-82642792 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 115 |
| Conread position: | 7-262 |
| Cow position: | chr3:14073366-14073115 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 112 |
| Conread position: | 7-474 |
| Cow position: | chr3:65182546-65182989 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 110 |
| Conread position: | 7-477 |
| Cow position: | chr3:34376493-34376943 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 111 |
| Conread position: | 7-477 |
| Cow position: | chr3:53506606-53506148 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 106 |
| Conread position: | 7-477 |
| Cow position: | chr3:73422058-73422536 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 118 |
| Conread position: | 10-422 |
| Cow position: | chr3:48529682-48529268 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 180 |
| Conread position: | 10-456 |
| Cow position: | chr3:17749765-17749310 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 109 |
| Conread position: | 10-456 |
| Cow position: | chr3:54348556-54348095 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 180 |
| Conread position: | 10-480 |
| Cow position: | chr3:42416832-42417301 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 119 |
| Conread position: | 11-254 |
| Cow position: | chr3:76468643-76468398 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-384 |
| Cow position: | chr3:62396506-62396146 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-384 |
| Cow position: | chr3:68265534-68265894 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-384 |
| Cow position: | chr3:74401668-74401308 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 57 |
| Conread position: | 11-480 |
| Cow position: | chr3:6891789-6891336 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-566 |
| Cow position: | chr3:9664100-9664641 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-566 |
| Cow position: | chr3:30761480-30762041 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-576 |
| Cow position: | chr3:4557705-4558250 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 85 |
| Conread position: | 11-576 |
| Cow position: | chr3:11219676-11219133 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 65 |
| Conread position: | 11-576 |
| Cow position: | chr3:17815535-17816083 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 52 |
| Conread position: | 11-576 |
| Cow position: | chr3:19231463-19230913 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-576 |
| Cow position: | chr3:19688451-19687901 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 58 |
| Conread position: | 11-576 |
| Cow position: | chr3:35514593-35514045 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 396 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 70, 32 |
| Conread position: | 11-576 |
| Cow position: | chr3:53405559-53405009 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-576 |
| Cow position: | chr3:68692831-68693381 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 52 |
| Conread position: | 11-576 |
| Cow position: | chr3:70715328-70715871 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-576 |
| Cow position: | chr3:71157747-71158303 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-576 |
| Cow position: | chr3:83651185-83650632 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 12-576 |
| Cow position: | chr3:61255428-61255973 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 64 |
| Conread position: | 15-576 |
| Cow position: | chr3:627441-628007 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 61 |
| Conread position: | 20-268 |
| Cow position: | chr3:15378816-15378569 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 188 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 23, 99 |
| Conread position: | 23-485 |
| Cow position: | chr3:80983796-80984238 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 95 |
| Conread position: | 32-576 |
| Cow position: | chr3:48207252-48207781 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 31 |
| Conread position: | 34-480 |
| Cow position: | chr3:41025069-41025512 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 83 |
| Conread position: | 42-576 |
| Cow position: | chr3:82796409-82796947 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 30 |
| Conread position: | 117-456 |
| Cow position: | chr3:48009484-48009832 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 104, 59 |
| Conread position: | 117-495 |
| Cow position: | chr3:28314222-28313855 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 58 |
| Conread position: | 125-576 |
| Cow position: | chr3:22458451-22458024 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 330 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 257, 49 |
| Conread position: | 130-495 |
| Cow position: | chr3:31811254-31811605 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 268 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 89, 46 |
| Conread position: | 130-576 |
| Cow position: | chr3:18628362-18628797 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 44 |
| Conread position: | 133-339 |
| Cow position: | chr3:2328715-2328518 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 93, 41 |
| Conread position: | 215-477 |
| Cow position: | chr3:7479779-7479507 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 10, 96 |
| Conread position: | 215-477 |
| Cow position: | chr3:20362366-20362637 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 199 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 10, 96 |
| Conread position: | 215-477 |
| Cow position: | chr3:28938139-28938410 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 198 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 10, 96 |
Show alignments to all cow chromosomes.