Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8023B06.5 |
| Conread position: | 1-488 |
| Cow position: | chr4:17363405-17362900 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 128 |
| Conread position: | 3-447 |
| Cow position: | chr4:50648351-50647918 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 116 |
| Conread position: | 3-477 |
| Cow position: | chr4:21360238-21360701 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 115 |
| Conread position: | 3-480 |
| Cow position: | chr4:31982623-31983093 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 107 |
| Conread position: | 3-482 |
| Cow position: | chr4:28647421-28646952 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 29 |
| Conread position: | 10-375 |
| Cow position: | chr4:68562674-68563046 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 269 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 33, 53 |
| Conread position: | 10-417 |
| Cow position: | chr4:22566825-22566412 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 180 |
| Conread position: | 10-417 |
| Cow position: | chr4:47866216-47866628 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 179 |
| Conread position: | 10-456 |
| Cow position: | chr4:44424774-44424313 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 181 |
| Conread position: | 10-495 |
| Cow position: | chr4:31520745-31521236 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 118 |
| Conread position: | 11-339 |
| Cow position: | chr4:55860320-55860635 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-359 |
| Cow position: | chr4:34457300-34457646 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 253 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 32, 65 |
| Conread position: | 11-384 |
| Cow position: | chr4:41332125-41332485 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-384 |
| Cow position: | chr4:62829628-62829268 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 47 |
| Conread position: | 11-391 |
| Cow position: | chr4:62643416-62643048 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 65 |
| Conread position: | 11-423 |
| Cow position: | chr4:68501521-68501938 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 178 |
| Conread position: | 11-480 |
| Cow position: | chr4:36077469-36077906 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-480 |
| Cow position: | chr4:36966800-36966344 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-480 |
| Cow position: | chr4:67553028-67552580 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 75 |
| Conread position: | 11-482 |
| Cow position: | chr4:30213690-30213235 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-576 |
| Cow position: | chr4:11360882-11360339 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-576 |
| Cow position: | chr4:18746786-18746240 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 65 |
| Conread position: | 11-576 |
| Cow position: | chr4:24067245-24066697 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 75 |
| Conread position: | 11-576 |
| Cow position: | chr4:27720116-27720658 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 402 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 32, 65 |
| Conread position: | 11-576 |
| Cow position: | chr4:45491253-45490705 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 41 |
| Conread position: | 11-576 |
| Cow position: | chr4:49227242-49226692 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 75 |
| Conread position: | 11-576 |
| Cow position: | chr4:55205446-55206008 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-576 |
| Cow position: | chr4:69000814-69001361 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 65 |
| Conread position: | 13-392 |
| Cow position: | chr4:68391878-68392240 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 274 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 30, 63 |
| Conread position: | 13-576 |
| Cow position: | chr4:21269639-21270187 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 60 |
| Conread position: | 18-477 |
| Cow position: | chr4:30071304-30070850 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 38 |
| Conread position: | 32-576 |
| Cow position: | chr4:31474074-31473532 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 11 |
| Conread position: | 32-576 |
| Cow position: | chr4:53629342-53629858 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 31 |
| Conread position: | 32-576 |
| Cow position: | chr4:67679982-67680528 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 31 |
| Conread position: | 117-496 |
| Cow position: | chr4:57213657-57214026 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 58 |
| Conread position: | 122-480 |
| Cow position: | chr4:11182242-11182580 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 53 |
| Conread position: | 125-576 |
| Cow position: | chr4:62180550-62180094 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 148 |
| Conread position: | 215-477 |
| Cow position: | chr4:12836008-12835737 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 197 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 10, 99 |
| Conread position: | 215-477 |
| Cow position: | chr4:13258636-13258364 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 10, 96 |
Show alignments to all cow chromosomes.