Cow genome map
Conread name: | Ss1.1-Pig3-SRG8023B06.5 |
Conread position: | 1-422 |
Cow position: | chr5:61130820-61130395 (view UCSC Genome Browser custom track) |
Alignm length: | 438 |
Alignm identity: | 310 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 11, 128 |
Conread position: | 1-456 |
Cow position: | chr5:39153811-39153348 (view UCSC Genome Browser custom track) |
Alignm length: | 474 |
Alignm identity: | 336 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 42, 118 |
Conread position: | 1-456 |
Cow position: | chr5:41434962-41435418 (view UCSC Genome Browser custom track) |
Alignm length: | 468 |
Alignm identity: | 334 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 42, 118 |
Conread position: | 1-480 |
Cow position: | chr5:24621907-24622390 (view UCSC Genome Browser custom track) |
Alignm length: | 497 |
Alignm identity: | 407 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 43, 115 |
Conread position: | 3-167 |
Cow position: | chr5:502497-502662 (view UCSC Genome Browser custom track) |
Alignm length: | 167 |
Alignm identity: | 127 |
Alignm E-value: | 3e-29 |
Alignm gaps (pig, cow): | 40, 115 |
Conread position: | 3-476 |
Cow position: | chr5:44969872-44969403 (view UCSC Genome Browser custom track) |
Alignm length: | 481 |
Alignm identity: | 365 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 41, 116 |
Conread position: | 3-477 |
Cow position: | chr5:30285735-30286198 (view UCSC Genome Browser custom track) |
Alignm length: | 484 |
Alignm identity: | 358 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 40, 115 |
Conread position: | 3-477 |
Cow position: | chr5:35292357-35292819 (view UCSC Genome Browser custom track) |
Alignm length: | 481 |
Alignm identity: | 350 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 40, 110 |
Conread position: | 3-477 |
Cow position: | chr5:72462922-72462450 (view UCSC Genome Browser custom track) |
Alignm length: | 483 |
Alignm identity: | 366 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 40, 116 |
Conread position: | 3-477 |
Cow position: | chr5:73100144-73099692 (view UCSC Genome Browser custom track) |
Alignm length: | 480 |
Alignm identity: | 344 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 41, 86 |
Conread position: | 3-480 |
Cow position: | chr5:59068960-59069434 (view UCSC Genome Browser custom track) |
Alignm length: | 485 |
Alignm identity: | 380 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 40, 115 |
Conread position: | 7-477 |
Cow position: | chr5:1651010-1651470 (view UCSC Genome Browser custom track) |
Alignm length: | 480 |
Alignm identity: | 344 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 36, 106 |
Conread position: | 11-270 |
Cow position: | chr5:70122017-70121766 (view UCSC Genome Browser custom track) |
Alignm length: | 268 |
Alignm identity: | 190 |
Alignm E-value: | 8e-27 |
Alignm gaps (pig, cow): | 32, 65 |
Conread position: | 11-305 |
Cow position: | chr5:33952348-33952630 (view UCSC Genome Browser custom track) |
Alignm length: | 303 |
Alignm identity: | 212 |
Alignm E-value: | 8e-28 |
Alignm gaps (pig, cow): | 32, 62 |
Conread position: | 11-305 |
Cow position: | chr5:33954264-33954546 (view UCSC Genome Browser custom track) |
Alignm length: | 303 |
Alignm identity: | 212 |
Alignm E-value: | 8e-28 |
Alignm gaps (pig, cow): | 32, 62 |
Conread position: | 11-346 |
Cow position: | chr5:53738199-53737868 (view UCSC Genome Browser custom track) |
Alignm length: | 345 |
Alignm identity: | 243 |
Alignm E-value: | 9.99995e-41 |
Alignm gaps (pig, cow): | 32, 65 |
Conread position: | 11-383 |
Cow position: | chr5:70588973-70589333 (view UCSC Genome Browser custom track) |
Alignm length: | 383 |
Alignm identity: | 272 |
Alignm E-value: | 5.04467e-44 |
Alignm gaps (pig, cow): | 32, 62 |
Conread position: | 11-480 |
Cow position: | chr5:3236201-3236650 (view UCSC Genome Browser custom track) |
Alignm length: | 478 |
Alignm identity: | 332 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 65 |
Conread position: | 11-480 |
Cow position: | chr5:44833021-44833468 (view UCSC Genome Browser custom track) |
Alignm length: | 479 |
Alignm identity: | 344 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 81, 32 |
Conread position: | 11-480 |
Cow position: | chr5:67450651-67451100 (view UCSC Genome Browser custom track) |
Alignm length: | 480 |
Alignm identity: | 355 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 47 |
Conread position: | 11-480 |
Cow position: | chr5:72685529-72685100 (view UCSC Genome Browser custom track) |
Alignm length: | 477 |
Alignm identity: | 333 |
Alignm E-value: | 2.00386e-43 |
Alignm gaps (pig, cow): | 32, 62 |
Conread position: | 11-480 |
Cow position: | chr5:73108161-73107724 (view UCSC Genome Browser custom track) |
Alignm length: | 478 |
Alignm identity: | 336 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 65 |
Conread position: | 11-571 |
Cow position: | chr5:56811339-56811903 (view UCSC Genome Browser custom track) |
Alignm length: | 584 |
Alignm identity: | 404 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 65 |
Conread position: | 11-571 |
Cow position: | chr5:72538267-72537703 (view UCSC Genome Browser custom track) |
Alignm length: | 584 |
Alignm identity: | 400 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 81, 32 |
Conread position: | 11-576 |
Cow position: | chr5:13232874-13233417 (view UCSC Genome Browser custom track) |
Alignm length: | 580 |
Alignm identity: | 397 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 62 |
Conread position: | 11-576 |
Cow position: | chr5:17279537-17278994 (view UCSC Genome Browser custom track) |
Alignm length: | 590 |
Alignm identity: | 403 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 81, 32 |
Conread position: | 11-576 |
Cow position: | chr5:21152137-21151598 (view UCSC Genome Browser custom track) |
Alignm length: | 583 |
Alignm identity: | 411 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 41 |
Conread position: | 11-576 |
Cow position: | chr5:38941568-38942121 (view UCSC Genome Browser custom track) |
Alignm length: | 584 |
Alignm identity: | 397 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 65 |
Conread position: | 11-576 |
Cow position: | chr5:47878000-47878550 (view UCSC Genome Browser custom track) |
Alignm length: | 592 |
Alignm identity: | 409 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 62 |
Conread position: | 11-576 |
Cow position: | chr5:48981480-48980926 (view UCSC Genome Browser custom track) |
Alignm length: | 583 |
Alignm identity: | 400 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 65 |
Conread position: | 11-576 |
Cow position: | chr5:50496007-50496561 (view UCSC Genome Browser custom track) |
Alignm length: | 584 |
Alignm identity: | 397 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 65 |
Conread position: | 11-576 |
Cow position: | chr5:56531932-56531382 (view UCSC Genome Browser custom track) |
Alignm length: | 592 |
Alignm identity: | 412 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 65 |
Conread position: | 11-576 |
Cow position: | chr5:56825428-56824879 (view UCSC Genome Browser custom track) |
Alignm length: | 593 |
Alignm identity: | 413 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 65 |
Conread position: | 11-576 |
Cow position: | chr5:59100494-59099931 (view UCSC Genome Browser custom track) |
Alignm length: | 593 |
Alignm identity: | 416 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 65 |
Conread position: | 11-576 |
Cow position: | chr5:70096731-70096182 (view UCSC Genome Browser custom track) |
Alignm length: | 593 |
Alignm identity: | 416 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 65 |
Conread position: | 11-576 |
Cow position: | chr5:72265281-72264731 (view UCSC Genome Browser custom track) |
Alignm length: | 592 |
Alignm identity: | 413 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 62 |
Conread position: | 11-588 |
Cow position: | chr5:39950836-39951396 (view UCSC Genome Browser custom track) |
Alignm length: | 604 |
Alignm identity: | 415 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 65 |
Conread position: | 12-391 |
Cow position: | chr5:73700855-73700496 (view UCSC Genome Browser custom track) |
Alignm length: | 389 |
Alignm identity: | 275 |
Alignm E-value: | 1e-39 |
Alignm gaps (pig, cow): | 31, 64 |
Conread position: | 19-477 |
Cow position: | chr5:61499218-61499661 (view UCSC Genome Browser custom track) |
Alignm length: | 464 |
Alignm identity: | 331 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 24, 94 |
Conread position: | 23-478 |
Cow position: | chr5:59125038-59124603 (view UCSC Genome Browser custom track) |
Alignm length: | 459 |
Alignm identity: | 371 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 94 |
Conread position: | 30-576 |
Cow position: | chr5:50230802-50231352 (view UCSC Genome Browser custom track) |
Alignm length: | 570 |
Alignm identity: | 393 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 13, 28 |
Conread position: | 32-488 |
Cow position: | chr5:21545452-21545926 (view UCSC Genome Browser custom track) |
Alignm length: | 483 |
Alignm identity: | 337 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 11, 96 |
Conread position: | 121-576 |
Cow position: | chr5:21510320-21509883 (view UCSC Genome Browser custom track) |
Alignm length: | 477 |
Alignm identity: | 340 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 8, 55 |
Conread position: | 124-481 |
Cow position: | chr5:28011489-28011124 (view UCSC Genome Browser custom track) |
Alignm length: | 373 |
Alignm identity: | 273 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 97, 52 |
Conread position: | 131-576 |
Cow position: | chr5:60173404-60172979 (view UCSC Genome Browser custom track) |
Alignm length: | 464 |
Alignm identity: | 331 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 251, 43 |
Conread position: | 174-576 |
Cow position: | chr5:43101049-43100648 (view UCSC Genome Browser custom track) |
Alignm length: | 422 |
Alignm identity: | 306 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 53, 99 |
Conread position: | 194-477 |
Cow position: | chr5:24184180-24183905 (view UCSC Genome Browser custom track) |
Alignm length: | 290 |
Alignm identity: | 214 |
Alignm E-value: | 9.99967e-42 |
Alignm gaps (pig, cow): | 33, 15 |
Conread position: | 213-477 |
Cow position: | chr5:39293370-39293628 (view UCSC Genome Browser custom track) |
Alignm length: | 268 |
Alignm identity: | 193 |
Alignm E-value: | 3e-38 |
Alignm gaps (pig, cow): | 14, 92 |
Conread position: | 215-477 |
Cow position: | chr5:2870010-2870281 (view UCSC Genome Browser custom track) |
Alignm length: | 277 |
Alignm identity: | 191 |
Alignm E-value: | 2e-26 |
Alignm gaps (pig, cow): | 10, 96 |
Conread position: | 215-477 |
Cow position: | chr5:11642432-11642161 (view UCSC Genome Browser custom track) |
Alignm length: | 277 |
Alignm identity: | 197 |
Alignm E-value: | 1e-32 |
Alignm gaps (pig, cow): | 10, 99 |
Conread position: | 215-477 |
Cow position: | chr5:37793708-37793437 (view UCSC Genome Browser custom track) |
Alignm length: | 276 |
Alignm identity: | 198 |
Alignm E-value: | 7e-36 |
Alignm gaps (pig, cow): | 10, 96 |
Conread position: | 215-477 |
Cow position: | chr5:56546018-56545747 (view UCSC Genome Browser custom track) |
Alignm length: | 276 |
Alignm identity: | 198 |
Alignm E-value: | 7e-36 |
Alignm gaps (pig, cow): | 10, 96 |
Conread position: | 224-477 |
Cow position: | chr5:44619017-44619270 (view UCSC Genome Browser custom track) |
Alignm length: | 261 |
Alignm identity: | 179 |
Alignm E-value: | 2e-24 |
Alignm gaps (pig, cow): | 44, 17 |
Show alignments to all cow chromosomes.