Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8023B06.5 |
| Conread position: | 3-146 |
| Cow position: | chr6:42954846-42954702 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 40, 116 |
| Conread position: | 3-477 |
| Cow position: | chr6:647986-648448 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 110 |
| Conread position: | 3-477 |
| Cow position: | chr6:28297071-28297524 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 116 |
| Conread position: | 3-477 |
| Cow position: | chr6:44865026-44864561 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 105 |
| Conread position: | 3-477 |
| Cow position: | chr6:47388989-47389467 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 115 |
| Conread position: | 4-477 |
| Cow position: | chr6:3959122-3959598 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 114 |
| Conread position: | 10-576 |
| Cow position: | chr6:22566122-22565571 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 66 |
| Conread position: | 11-244 |
| Cow position: | chr6:1538179-1537944 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 174 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 32, 65 |
| Conread position: | 11-269 |
| Cow position: | chr6:64708301-64708051 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-305 |
| Cow position: | chr6:60493081-60492799 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 211 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 32, 52 |
| Conread position: | 11-384 |
| Cow position: | chr6:8273680-8273320 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-384 |
| Cow position: | chr6:39772671-39773031 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 65 |
| Conread position: | 11-384 |
| Cow position: | chr6:49754907-49755263 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 276 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 32, 47 |
| Conread position: | 11-391 |
| Cow position: | chr6:31293686-31294057 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 65 |
| Conread position: | 11-482 |
| Cow position: | chr6:34228545-34228978 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 331 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 32, 65 |
| Conread position: | 11-519 |
| Cow position: | chr6:66091901-66091406 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 225 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-576 |
| Cow position: | chr6:11515938-11515385 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 75 |
| Conread position: | 11-576 |
| Cow position: | chr6:14262389-14262939 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 404 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 32, 65 |
| Conread position: | 11-576 |
| Cow position: | chr6:25793077-25793619 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-576 |
| Cow position: | chr6:32983087-32982537 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-576 |
| Cow position: | chr6:39780538-39781088 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-576 |
| Cow position: | chr6:47469310-47469881 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 65 |
| Conread position: | 11-576 |
| Cow position: | chr6:53169983-53169436 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 65 |
| Conread position: | 11-576 |
| Cow position: | chr6:59171327-59170764 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 46 |
| Conread position: | 11-576 |
| Cow position: | chr6:60006402-60005858 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 18-262 |
| Cow position: | chr6:54365992-54366231 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 183 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 25, 100 |
| Conread position: | 35-574 |
| Cow position: | chr6:40010842-40010310 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 38 |
| Conread position: | 117-477 |
| Cow position: | chr6:57682781-57682426 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 258 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 117, 58 |
| Conread position: | 122-588 |
| Cow position: | chr6:669284-668815 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 52 |
| Conread position: | 130-566 |
| Cow position: | chr6:45764656-45764239 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 318 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 252, 44 |
| Conread position: | 130-576 |
| Cow position: | chr6:2387754-2388175 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 327 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 14, 45 |
| Conread position: | 130-576 |
| Cow position: | chr6:13347134-13347560 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 328 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 252, 44 |
| Conread position: | 189-576 |
| Cow position: | chr6:29759033-29759414 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 290 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 38, 91 |
| Conread position: | 215-477 |
| Cow position: | chr6:18022747-18022476 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 200 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 10, 96 |
| Conread position: | 215-477 |
| Cow position: | chr6:68444106-68443837 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 19, 94 |
| Conread position: | 215-565 |
| Cow position: | chr6:14738706-14739073 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 255 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 10, 96 |
| Conread position: | 216-477 |
| Cow position: | chr6:41506633-41506901 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 18, 93 |
| Conread position: | 246-480 |
| Cow position: | chr6:39700960-39700727 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 249-480 |
| Cow position: | chr6:21608855-21609068 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 133, 23 |
| Conread position: | 249-480 |
| Cow position: | chr6:21609945-21610158 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 133, 23 |
| Conread position: | 267-477 |
| Cow position: | chr6:46486248-46486463 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 142, 41 |
| Conread position: | 301-480 |
| Cow position: | chr6:42954651-42954472 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 149 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 119, 63 |
| Conread position: | 480-581 |
| Cow position: | chr6:39700691-39700587 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 480-581 |
| Cow position: | chr6:47389507-47389611 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 87 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 37, 0 |
Show alignments to all cow chromosomes.