Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8023B06.5 |
| Conread position: | 1-235 |
| Cow position: | chr7:63891020-63890787 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 180 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 42, 118 |
| Conread position: | 1-477 |
| Cow position: | chr7:16626175-16626645 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 117 |
| Conread position: | 1-488 |
| Cow position: | chr7:5177750-5177246 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 128 |
| Conread position: | 3-202 |
| Cow position: | chr7:29367014-29366820 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 40, 16 |
| Conread position: | 3-473 |
| Cow position: | chr7:68336324-68335856 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 116 |
| Conread position: | 3-477 |
| Cow position: | chr7:18298582-18298111 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 116 |
| Conread position: | 3-477 |
| Cow position: | chr7:44217741-44217281 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 25 |
| Conread position: | 3-477 |
| Cow position: | chr7:53075373-53075827 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 116 |
| Conread position: | 3-477 |
| Cow position: | chr7:68703348-68703809 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 110 |
| Conread position: | 3-588 |
| Cow position: | chr7:42984833-42985428 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 496 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 117 |
| Conread position: | 7-320 |
| Cow position: | chr7:64051152-64050851 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 104 |
| Conread position: | 7-474 |
| Cow position: | chr7:16792254-16791809 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 84 |
| Conread position: | 7-477 |
| Cow position: | chr7:59663889-59663422 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 112 |
| Conread position: | 10-444 |
| Cow position: | chr7:552079-552526 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 23 |
| Conread position: | 11-263 |
| Cow position: | chr7:59536646-59536900 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 81, 32 |
| Conread position: | 11-270 |
| Cow position: | chr7:8242497-8242246 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-384 |
| Cow position: | chr7:38010721-38011081 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 65 |
| Conread position: | 11-391 |
| Cow position: | chr7:59287328-59286950 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 65 |
| Conread position: | 11-391 |
| Cow position: | chr7:61230877-61230500 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 65 |
| Conread position: | 11-566 |
| Cow position: | chr7:63294652-63295203 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 65 |
| Conread position: | 11-576 |
| Cow position: | chr7:1047253-1046687 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 75 |
| Conread position: | 11-576 |
| Cow position: | chr7:10042655-10042112 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 75 |
| Conread position: | 11-576 |
| Cow position: | chr7:23914576-23914016 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-576 |
| Cow position: | chr7:48424172-48423630 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-576 |
| Cow position: | chr7:58961202-58960653 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-576 |
| Cow position: | chr7:59782802-59782252 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 65 |
| Conread position: | 11-576 |
| Cow position: | chr7:63115166-63115716 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 65 |
| Conread position: | 11-576 |
| Cow position: | chr7:64861275-64860725 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 65 |
| Conread position: | 11-576 |
| Cow position: | chr7:66071732-66072293 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-576 |
| Cow position: | chr7:68487648-68487100 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 31 |
| Conread position: | 11-576 |
| Cow position: | chr7:68973860-68974382 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 399 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 23-480 |
| Cow position: | chr7:8237409-8237831 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 68 |
| Conread position: | 31-584 |
| Cow position: | chr7:50810657-50811208 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 404 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 12, 42 |
| Conread position: | 48-476 |
| Cow position: | chr7:43238979-43239405 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 71 |
| Conread position: | 88-456 |
| Cow position: | chr7:54107522-54107152 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 91 |
| Conread position: | 92-384 |
| Cow position: | chr7:51426885-51427159 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 70, 83 |
| Conread position: | 130-495 |
| Cow position: | chr7:557364-557715 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 258 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 89, 46 |
| Conread position: | 130-576 |
| Cow position: | chr7:20430322-20430744 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 252, 44 |
| Conread position: | 144-384 |
| Cow position: | chr7:38011089-38011315 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 205, 73 |
| Conread position: | 188-576 |
| Cow position: | chr7:62591003-62590610 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 276 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 39, 85 |
| Conread position: | 215-477 |
| Cow position: | chr7:66028430-66028159 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 12, 96 |
| Conread position: | 215-477 |
| Cow position: | chr7:68280362-68280091 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 10, 96 |
| Conread position: | 216-480 |
| Cow position: | chr7:54521230-54521494 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 272-480 |
| Cow position: | chr7:59536932-59537126 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 480-581 |
| Cow position: | chr7:43239447-43239551 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 90 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 480-581 |
| Cow position: | chr7:54521530-54521634 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 480-588 |
| Cow position: | chr7:16626684-16626794 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 34, 108 |
Show alignments to all cow chromosomes.