Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8023B06.5 |
| Conread position: | 1-435 |
| Cow position: | chr9:40924680-40924245 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 118 |
| Conread position: | 1-456 |
| Cow position: | chr9:22612440-22611979 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 118 |
| Conread position: | 1-456 |
| Cow position: | chr9:25377935-25378394 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 42 |
| Conread position: | 1-477 |
| Cow position: | chr9:4279868-4279395 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 118 |
| Conread position: | 3-167 |
| Cow position: | chr9:12287234-12287399 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 40, 115 |
| Conread position: | 3-283 |
| Cow position: | chr9:41381315-41381040 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 210 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 40, 116 |
| Conread position: | 3-331 |
| Cow position: | chr9:62783461-62783137 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 110 |
| Conread position: | 3-476 |
| Cow position: | chr9:41014154-41014626 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 116 |
| Conread position: | 3-480 |
| Cow position: | chr9:4954388-4953914 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 116 |
| Conread position: | 3-485 |
| Cow position: | chr9:225740-226216 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 116 |
| Conread position: | 7-202 |
| Cow position: | chr9:49009086-49009281 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 36, 105 |
| Conread position: | 7-477 |
| Cow position: | chr9:25474805-25474342 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 106 |
| Conread position: | 11-480 |
| Cow position: | chr9:32259489-32259926 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 65 |
| Conread position: | 11-576 |
| Cow position: | chr9:2092674-2093224 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-576 |
| Cow position: | chr9:3171280-3170715 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-576 |
| Cow position: | chr9:7124387-7124937 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-576 |
| Cow position: | chr9:7163018-7163564 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 41 |
| Conread position: | 11-576 |
| Cow position: | chr9:26332180-26332724 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 65 |
| Conread position: | 11-576 |
| Cow position: | chr9:26570833-26570283 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 65 |
| Conread position: | 11-576 |
| Cow position: | chr9:43891931-43892481 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 65 |
| Conread position: | 11-576 |
| Cow position: | chr9:44397718-44397164 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 32 |
| Conread position: | 11-576 |
| Cow position: | chr9:48342847-48343397 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-576 |
| Cow position: | chr9:50646500-50647066 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-576 |
| Cow position: | chr9:50656094-50655525 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-576 |
| Cow position: | chr9:55145698-55145148 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 11-576 |
| Cow position: | chr9:62830605-62830059 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 65 |
| Conread position: | 13-454 |
| Cow position: | chr9:30092526-30092984 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 119 |
| Conread position: | 13-477 |
| Cow position: | chr9:136038-135587 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 100 |
| Conread position: | 13-566 |
| Cow position: | chr9:40898037-40897483 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 60 |
| Conread position: | 21-321 |
| Cow position: | chr9:21002876-21002579 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 224 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 22, 52 |
| Conread position: | 23-220 |
| Cow position: | chr9:63085774-63085967 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 95 |
| Conread position: | 23-480 |
| Cow position: | chr9:63140729-63140296 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 95 |
| Conread position: | 47-477 |
| Cow position: | chr9:59616370-59615952 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 71 |
| Conread position: | 106-476 |
| Cow position: | chr9:24909492-24909126 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 11 |
| Conread position: | 122-482 |
| Cow position: | chr9:6091603-6091263 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 53 |
| Conread position: | 122-576 |
| Cow position: | chr9:2801827-2801395 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 331 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 260, 46 |
| Conread position: | 144-576 |
| Cow position: | chr9:55857685-55857261 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 129 |
| Conread position: | 178-391 |
| Cow position: | chr9:32252049-32251838 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 49, 93 |
| Conread position: | 215-477 |
| Cow position: | chr9:24777245-24777516 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 10, 96 |
| Conread position: | 292-485 |
| Cow position: | chr9:62782915-62782723 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 57, 15 |
Show alignments to all cow chromosomes.